Wall clock time and date at job start Fri Apr 10 2020 23:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47234 * 99.66256 * 3 2 1 5 5 C 1.36787 * 120.00333 * 272.69403 * 4 3 2 6 6 H 1.08000 * 120.00443 * 192.72135 * 5 4 3 7 7 C 1.39097 * 119.99974 * 12.71948 * 5 4 3 8 8 N 1.31341 * 119.99878 * 17.73365 * 7 5 4 9 9 Si 1.86799 * 120.00001 * 197.73550 * 7 5 4 10 10 H 1.48504 * 109.46997 * 89.99719 * 9 7 5 11 11 H 1.48494 * 109.46986 * 209.99741 * 9 7 5 12 12 H 1.48501 * 109.47096 * 330.00148 * 9 7 5 13 13 C 1.34782 * 119.99766 * 92.68652 * 4 3 2 14 14 O 1.21654 * 119.99663 * 185.02801 * 13 4 3 15 15 C 1.47301 * 119.99933 * 5.03673 * 13 4 3 16 16 C 1.39029 * 120.69717 * 304.62526 * 15 13 4 17 17 C 1.38747 * 120.47235 * 180.02562 * 16 15 13 18 18 C 1.36242 * 121.89703 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 119.63564 * 180.27951 * 18 17 16 20 20 C 1.40792 * 120.72539 * 0.02562 * 18 17 16 21 21 N 1.33648 * 121.11927 * 180.02562 * 20 18 17 22 22 C 1.31093 * 121.31525 * 179.97438 * 21 20 18 23 23 C 1.39310 * 121.76193 * 0.02562 * 22 21 20 24 24 C 1.36761 * 119.83385 * 359.97438 * 23 22 21 25 25 C 1.40289 * 118.09773 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46857 * 339.66116 * 3 2 1 27 27 H 1.08993 * 109.46807 * 219.66335 * 3 2 1 28 28 H 0.96993 * 120.00230 * 180.02562 * 8 7 5 29 29 H 1.07991 * 119.76166 * 0.02562 * 16 15 13 30 30 H 1.07992 * 119.05056 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.11977 * 179.97438 * 22 21 20 32 32 H 1.07994 * 120.08042 * 180.02562 * 23 22 21 33 33 H 1.07998 * 120.95064 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0963 0.2327 -1.3616 5 6 3.2723 -0.8223 -2.2142 6 1 3.8191 -0.6867 -3.1356 7 6 2.7471 -2.0700 -1.8945 8 7 1.8074 -2.1729 -0.9827 9 14 3.3783 -3.5993 -2.7619 10 1 4.5232 -4.1624 -2.0020 11 1 2.2915 -4.6083 -2.8397 12 1 3.8220 -3.2428 -4.1335 13 6 3.3720 1.4858 -1.7742 14 8 3.6894 1.6893 -2.9308 15 6 3.2891 2.6089 -0.8246 16 6 2.1207 2.8499 -0.1107 17 6 2.0476 3.9094 0.7822 18 6 3.1018 4.7458 0.9946 19 17 2.9482 6.0490 2.1311 20 6 4.3163 4.5617 0.3065 21 7 5.3556 5.3771 0.5092 22 6 6.4882 5.2089 -0.1290 23 6 6.6661 4.1767 -1.0475 24 6 5.6413 3.3072 -1.3007 25 6 4.4321 3.4931 -0.6142 26 1 2.9718 -0.9628 0.3572 27 1 2.9710 0.7919 0.6559 28 1 1.4413 -3.0429 -0.7595 29 1 1.2640 2.2079 -0.2521 30 1 1.1289 4.0753 1.3250 31 1 7.3050 5.8892 0.0618 32 1 7.6111 4.0631 -1.5578 33 1 5.7593 2.5009 -2.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337800509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:32 Heat of formation + Delta-G solvation = 48.497145 kcal Electronic energy + Delta-G solvation = -23142.148637 eV Core-core repulsion = 19580.146022 eV Total energy + Delta-G solvation = -3562.002615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00021 -40.55525 -38.26385 -37.72765 -37.21650 -36.19489 -34.24691 -33.80987 -31.70947 -31.15141 -29.27795 -27.16229 -25.44671 -24.69440 -24.02272 -21.18019 -19.96644 -19.58150 -18.41389 -18.25829 -17.97773 -17.59346 -16.68456 -16.09666 -15.97169 -15.66535 -15.45896 -15.29894 -14.97170 -14.76564 -14.30069 -14.03645 -13.78689 -13.58790 -13.48202 -13.39428 -13.09541 -12.92289 -12.65545 -12.55140 -12.32681 -12.13630 -12.08186 -11.85287 -11.28666 -11.22999 -10.93076 -10.42587 -10.12614 -9.94038 -9.22648 -8.49898 -6.05715 -0.95231 -0.30911 0.65017 1.01742 1.33690 1.46368 1.56600 1.59673 1.86840 1.93610 2.22866 2.32192 2.85621 2.90738 2.98684 3.12599 3.44853 3.60089 3.63480 3.71244 3.86386 3.99857 4.19172 4.32295 4.38964 4.48117 4.63067 4.80913 4.81539 4.94038 5.02465 5.22737 5.33214 5.39058 5.64987 5.86197 6.26297 6.79760 6.95153 7.00234 7.17783 7.72251 8.51270 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.004683 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.175434 B = 5977.427459 C = 7194.573844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.266 3.734 3 C 0.221 3.779 4 N -0.434 5.434 5 C -0.338 4.338 6 H 0.093 0.907 7 C 0.007 3.993 8 N -0.889 5.889 9 Si 0.996 3.004 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.482 3.518 14 O -0.605 6.605 15 C -0.084 4.084 16 C -0.090 4.090 17 C -0.082 4.082 18 C -0.010 4.010 19 Cl -0.037 7.037 20 C 0.120 3.880 21 N -0.483 5.483 22 C 0.140 3.860 23 C -0.152 4.152 24 C -0.064 4.064 25 C -0.078 4.078 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.280 0.720 29 H 0.127 0.873 30 H 0.168 0.832 31 H 0.206 0.794 32 H 0.178 0.822 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 10.227 7.228 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.050 4.050 3 C 0.095 3.905 4 N -0.151 5.151 5 C -0.465 4.465 6 H 0.111 0.889 7 C -0.196 4.196 8 N -0.527 5.527 9 Si 0.820 3.180 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.273 3.727 14 O -0.491 6.491 15 C -0.088 4.088 16 C -0.110 4.110 17 C -0.102 4.102 18 C -0.038 4.038 19 Cl -0.008 7.008 20 C -0.002 4.002 21 N -0.191 5.191 22 C -0.031 4.031 23 C -0.172 4.172 24 C -0.090 4.090 25 C -0.081 4.081 26 H 0.146 0.854 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.185 0.815 31 H 0.223 0.777 32 H 0.196 0.804 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.334 10.908 7.489 15.128 hybrid contribution 0.130 -1.775 -1.253 2.177 sum 7.464 9.133 6.235 13.342 Atomic orbital electron populations 1.80907 1.14143 1.13815 1.09392 1.29178 0.95352 0.88872 0.91644 1.19044 0.81132 1.05473 0.84856 1.43711 1.54875 1.05211 1.11293 1.19789 1.34617 0.87191 1.04913 0.88894 1.26023 0.94156 1.01655 0.97716 1.69700 1.23145 1.26637 1.33210 0.84866 0.78101 0.76516 0.78552 1.18275 1.21016 1.19872 1.18123 0.84670 0.82490 0.87443 1.90642 1.54789 1.83906 1.19793 1.21119 0.94838 0.96087 0.96766 1.21388 0.96731 0.97864 0.95000 1.20748 0.99016 0.92735 0.97748 1.20558 0.93649 0.93672 0.95946 1.98358 1.97654 1.46862 1.57908 1.18429 0.93737 0.92572 0.95462 1.68156 1.00226 1.25856 1.24871 1.23741 0.94590 0.95270 0.89513 1.22394 1.00768 0.94867 0.99137 1.21626 0.91718 0.99278 0.96363 1.19552 0.94605 0.95612 0.98345 0.85430 0.86526 0.90938 0.85531 0.81481 0.77726 0.80434 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.00 18.51 20.01 0.37 -22.63 16 2 C 0.27 11.42 10.53 89.44 0.94 12.36 16 3 C 0.22 8.64 4.76 84.58 0.40 9.04 16 4 N -0.43 -19.84 2.58 -649.30 -1.68 -21.52 16 5 C -0.34 -16.88 9.40 84.13 0.79 -16.09 16 6 H 0.09 4.95 7.33 -2.91 -0.02 4.93 16 7 C 0.01 0.34 5.04 84.97 0.43 0.76 16 8 N -0.89 -42.28 8.66 21.69 0.19 -42.09 16 9 Si 1.00 38.30 29.59 68.60 2.03 40.33 16 10 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.48 21.87 6.47 86.63 0.56 22.43 16 14 O -0.60 -31.54 15.63 -4.20 -0.07 -31.60 16 15 C -0.08 -3.11 4.84 -18.68 -0.09 -3.20 16 16 C -0.09 -2.97 7.76 22.58 0.18 -2.80 16 17 C -0.08 -2.24 9.62 21.93 0.21 -2.03 16 18 C -0.01 -0.29 6.32 22.43 0.14 -0.15 16 19 Cl -0.04 -0.90 28.46 -2.72 -0.08 -0.98 16 20 C 0.12 3.63 6.60 40.30 0.27 3.90 16 21 N -0.48 -12.81 9.79 -188.64 -1.85 -14.66 16 22 C 0.14 2.74 11.14 85.06 0.95 3.69 16 23 C -0.15 -3.13 10.04 22.18 0.22 -2.91 16 24 C -0.06 -1.91 9.40 22.42 0.21 -1.70 16 25 C -0.08 -2.59 5.90 -19.95 -0.12 -2.71 16 26 H 0.13 5.01 6.57 -2.39 -0.02 4.99 16 27 H 0.12 3.74 5.91 -2.39 -0.01 3.72 16 28 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 29 H 0.13 4.50 5.34 -2.92 -0.02 4.49 16 30 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 31 H 0.21 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.13 4.45 6.73 -2.91 -0.02 4.43 16 Total: -1.00 -64.18 306.74 5.21 -58.98 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.19 Total: 13.56 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 5.09 Total: 20.61 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -2.96 Total: -100.89 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.07 Total: -31.60 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -64.18 5.21 -58.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337800509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.475 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds