Wall clock time and date at job start Fri Apr 10 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47594 * 300.00720 * 3 2 1 6 6 H 1.48501 * 109.47138 * 60.01018 * 3 2 1 7 7 C 1.37874 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47381 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.46758 * 110.99830 * 50.14587 * 12 11 10 14 14 C 1.53428 * 108.57360 * 175.08504 * 13 12 11 15 15 O 1.43137 * 107.90842 * 296.70954 * 14 13 12 16 16 C 1.36174 * 116.69307 * 45.27010 * 15 14 13 17 17 C 1.38779 * 118.72260 * 165.42880 * 16 15 14 18 18 C 1.38255 * 120.21504 * 179.87437 * 17 16 15 19 19 Cl 1.73604 * 120.00649 * 179.82156 * 18 17 16 20 20 C 1.38463 * 119.99155 * 359.69533 * 18 17 16 21 21 Cl 1.73591 * 119.96481 * 180.21086 * 20 18 17 22 22 C 1.38159 * 120.06958 * 0.23404 * 20 18 17 23 23 C 1.38953 * 121.37542 * 345.15738 * 16 15 14 24 24 H 0.96992 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46999 * 60.01016 * 9 7 2 26 26 H 1.08996 * 109.47444 * 300.00108 * 9 7 2 27 27 H 1.08997 * 109.47096 * 60.00102 * 10 9 7 28 28 H 1.09002 * 109.47010 * 300.00377 * 10 9 7 29 29 H 1.08997 * 109.47142 * 59.99861 * 11 10 9 30 30 H 1.09002 * 109.47137 * 300.00031 * 11 10 9 31 31 H 1.08996 * 109.61890 * 294.80669 * 13 12 11 32 32 H 1.08994 * 109.62132 * 55.35553 * 13 12 11 33 33 H 1.09000 * 109.77660 * 56.32182 * 14 13 12 34 34 H 1.09004 * 109.77123 * 177.11600 * 14 13 12 35 35 H 1.08001 * 119.89304 * 359.56327 * 17 16 15 36 36 H 1.08001 * 119.87519 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1037 -0.0006 13 6 3.4433 -5.9329 1.0520 14 6 4.3328 -7.1826 1.0840 15 8 3.5105 -8.2991 1.4393 16 6 2.3097 -8.4007 0.8052 17 6 1.6173 -9.6013 0.8766 18 6 0.3942 -9.7376 0.2465 19 17 -0.4651 -11.2434 0.3354 20 6 -0.1464 -8.6722 -0.4533 21 17 -1.6847 -8.8425 -1.2396 22 6 0.5373 -7.4739 -0.5269 23 6 1.7708 -7.3311 0.1007 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 4.0527 -5.0554 0.8361 32 1 2.9492 -5.8104 2.0158 33 1 4.7733 -7.3471 0.1007 34 1 5.1215 -7.0549 1.8256 35 1 2.0375 -10.4334 1.4219 36 1 0.1129 -6.6451 -1.0739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339722457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:36 Heat of formation + Delta-G solvation = -27.134412 kcal Electronic energy + Delta-G solvation = -21260.923648 eV Core-core repulsion = 17796.748896 eV Total energy + Delta-G solvation = -3464.174752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33064 -38.21561 -37.40164 -36.61034 -36.18083 -33.81962 -31.68440 -30.91233 -30.60389 -28.29673 -25.99300 -24.65486 -23.61627 -22.06694 -20.74169 -20.01212 -18.44969 -17.43129 -17.00972 -16.36142 -15.77451 -15.34431 -15.08300 -14.64038 -14.54936 -14.34193 -14.20947 -13.93190 -13.47644 -12.96801 -12.54298 -12.49111 -12.11218 -12.00462 -11.74811 -11.57768 -11.32423 -11.02224 -10.99683 -10.96827 -10.76626 -10.62815 -10.58706 -9.93112 -9.71053 -9.52791 -9.17320 -8.73039 -8.43384 -7.74014 -6.08024 -4.11104 0.80032 0.90728 1.70715 2.03262 2.93304 3.25802 3.25841 3.33797 3.36928 3.63798 4.24514 4.39252 4.43294 4.70593 4.83936 4.91030 4.99750 5.26057 5.28379 5.38177 5.43000 5.48911 5.54234 5.57845 5.70657 5.75207 5.92797 6.03316 6.38770 6.47703 6.73782 6.87080 6.96354 7.12456 7.55621 7.67381 7.90210 8.31669 8.95634 9.53708 11.03298 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.003108 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.741578 B = 9005.634367 C =10342.666536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.112 4.112 11 C 0.054 3.946 12 N -0.484 5.484 13 C 0.010 3.990 14 C 0.057 3.943 15 O -0.310 6.310 16 C 0.100 3.900 17 C -0.106 4.106 18 C -0.033 4.033 19 Cl -0.051 7.051 20 C -0.030 4.030 21 Cl -0.050 7.050 22 C -0.109 4.109 23 C 0.076 3.924 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.149 0.851 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -20.669 1.410 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.198 5.198 13 C -0.116 4.116 14 C -0.018 4.018 15 O -0.224 6.224 16 C 0.051 3.949 17 C -0.126 4.126 18 C -0.062 4.062 19 Cl -0.022 7.022 20 C -0.059 4.059 21 Cl -0.021 7.021 22 C -0.131 4.131 23 C -0.024 4.024 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.574 -20.712 1.056 21.045 hybrid contribution -0.131 1.066 0.377 1.138 sum 3.443 -19.646 1.434 19.997 Atomic orbital electron populations 1.69967 1.06065 1.26639 1.50611 1.25025 0.94855 0.99332 0.95213 0.86534 0.80076 0.83737 0.77648 1.19731 1.20952 1.20990 1.21218 0.93024 0.90881 1.50877 0.92605 1.19063 0.93885 0.91105 0.97430 1.21825 0.99598 0.92434 1.01164 1.22635 0.93449 0.89003 1.01888 1.58880 1.15711 1.00860 1.44303 1.22936 0.95057 1.00091 0.93553 1.23302 0.92345 0.83372 1.02821 1.86224 1.26538 1.47968 1.61656 1.18410 0.87727 0.93106 0.95611 1.20074 0.93525 0.96489 1.02475 1.20148 0.94656 0.88112 1.03254 1.98372 1.76225 1.30346 1.97301 1.20363 0.90285 0.94307 1.00900 1.98382 1.27121 1.97783 1.78829 1.20787 0.93348 0.97060 1.01899 1.18984 0.93267 0.91811 0.98381 0.92952 0.96330 0.96578 0.92890 0.92127 0.89727 0.93365 0.86743 0.91845 0.90365 0.86364 0.83332 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.08 4.58 -26.73 -0.12 -2.21 16 11 C 0.05 0.85 4.36 -3.83 -0.02 0.83 16 12 N -0.48 -6.70 4.76 -170.81 -0.81 -7.51 16 13 C 0.01 0.12 4.84 -3.68 -0.02 0.10 16 14 C 0.06 0.55 7.26 37.38 0.27 0.82 16 15 O -0.31 -3.70 10.40 -20.29 -0.21 -3.91 16 16 C 0.10 1.27 6.47 -39.12 -0.25 1.01 16 17 C -0.11 -1.22 9.72 -39.37 -0.38 -1.60 16 18 C -0.03 -0.39 6.32 -39.49 -0.25 -0.64 16 19 Cl -0.05 -0.55 27.96 -51.86 -1.45 -2.00 16 20 C -0.03 -0.38 6.32 -39.53 -0.25 -0.63 16 21 Cl -0.05 -0.60 27.95 -51.86 -1.45 -2.05 16 22 C -0.11 -1.44 8.84 -39.28 -0.35 -1.79 16 23 C 0.08 1.03 5.81 -83.57 -0.49 0.54 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.31 6.44 -51.93 -0.33 0.98 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 31 H 0.11 1.30 6.54 -51.93 -0.34 0.96 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.15 1.97 6.13 -52.49 -0.32 1.65 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -29.22 325.87 -9.95 -39.17 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.25 Total: -3.08 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.40 Total: -16.11 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: -0.08 Total: -32.98 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.21 Total: -3.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.90 Total: -4.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.22 -9.95 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339722457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.036 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds