Wall clock time and date at job start Fri Apr 10 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47594 * 300.00720 * 3 2 1 6 6 H 1.48501 * 109.47138 * 60.01018 * 3 2 1 7 7 C 1.37874 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47381 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.46758 * 110.99830 * 50.14587 * 12 11 10 14 14 C 1.53428 * 108.57360 * 175.08504 * 13 12 11 15 15 O 1.43137 * 107.90842 * 296.70954 * 14 13 12 16 16 C 1.36174 * 116.69307 * 45.27010 * 15 14 13 17 17 C 1.38779 * 118.72260 * 165.42880 * 16 15 14 18 18 C 1.38255 * 120.21504 * 179.87437 * 17 16 15 19 19 Cl 1.73604 * 120.00649 * 179.82156 * 18 17 16 20 20 C 1.38463 * 119.99155 * 359.69533 * 18 17 16 21 21 Cl 1.73591 * 119.96481 * 180.21086 * 20 18 17 22 22 C 1.38159 * 120.06958 * 0.23404 * 20 18 17 23 23 C 1.38953 * 121.37542 * 345.15738 * 16 15 14 24 24 H 0.96992 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46999 * 60.01016 * 9 7 2 26 26 H 1.08996 * 109.47444 * 300.00108 * 9 7 2 27 27 H 1.08997 * 109.47096 * 60.00102 * 10 9 7 28 28 H 1.09002 * 109.47010 * 300.00377 * 10 9 7 29 29 H 1.08997 * 109.47142 * 59.99861 * 11 10 9 30 30 H 1.09002 * 109.47137 * 300.00031 * 11 10 9 31 31 H 1.08996 * 109.61890 * 294.80669 * 13 12 11 32 32 H 1.08994 * 109.62132 * 55.35553 * 13 12 11 33 33 H 1.09000 * 109.77660 * 56.32182 * 14 13 12 34 34 H 1.09004 * 109.77123 * 177.11600 * 14 13 12 35 35 H 1.08001 * 119.89304 * 359.56327 * 17 16 15 36 36 H 1.08001 * 119.87519 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1037 -0.0006 13 6 3.4433 -5.9329 1.0520 14 6 4.3328 -7.1826 1.0840 15 8 3.5105 -8.2991 1.4393 16 6 2.3097 -8.4007 0.8052 17 6 1.6173 -9.6013 0.8766 18 6 0.3942 -9.7376 0.2465 19 17 -0.4651 -11.2434 0.3354 20 6 -0.1464 -8.6722 -0.4533 21 17 -1.6847 -8.8425 -1.2396 22 6 0.5373 -7.4739 -0.5269 23 6 1.7708 -7.3311 0.1007 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 4.0527 -5.0554 0.8361 32 1 2.9492 -5.8104 2.0158 33 1 4.7733 -7.3471 0.1007 34 1 5.1215 -7.0549 1.8256 35 1 2.0375 -10.4334 1.4219 36 1 0.1129 -6.6451 -1.0739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339722457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:35 Heat of formation + Delta-G solvation = -43.038521 kcal Electronic energy + Delta-G solvation = -21261.613302 eV Core-core repulsion = 17796.748896 eV Total energy + Delta-G solvation = -3464.864406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.29691 -39.14751 -38.49427 -37.54868 -37.14380 -35.65822 -33.44172 -31.82022 -31.58248 -29.69562 -27.48044 -25.61221 -25.02504 -23.39801 -22.01692 -21.22698 -19.42527 -18.63361 -18.19737 -17.96173 -16.77541 -16.54134 -16.33141 -16.26974 -15.53178 -15.50306 -15.18892 -14.91431 -14.68492 -14.33366 -14.03837 -13.71238 -13.42654 -13.18080 -12.99823 -12.92803 -12.67757 -12.46642 -12.24789 -12.23076 -11.96225 -11.84826 -11.73777 -11.50906 -11.39313 -11.16924 -10.76480 -10.55998 -9.69297 -8.75867 -8.20440 -6.31149 -0.18081 -0.05917 0.76849 1.08212 1.40558 1.41528 1.53916 1.97965 2.34438 2.40586 2.61871 3.13755 3.29733 3.53750 3.76520 3.87822 3.98293 4.08259 4.17699 4.27872 4.42418 4.48405 4.55160 4.58514 4.64358 4.72723 4.79912 4.88541 5.00900 5.06421 5.17254 5.50171 5.64457 5.74043 5.81241 5.84300 6.16411 6.23559 6.86237 7.38542 8.91569 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.003108 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.741578 B = 9005.634367 C =10342.666536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.067 3.933 12 N -0.486 5.486 13 C 0.004 3.996 14 C 0.059 3.941 15 O -0.314 6.314 16 C 0.098 3.902 17 C -0.101 4.101 18 C -0.033 4.033 19 Cl -0.040 7.040 20 C -0.038 4.038 21 Cl -0.049 7.049 22 C -0.117 4.117 23 C 0.061 3.939 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -21.454 1.877 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.058 4.058 12 N -0.201 5.201 13 C -0.122 4.122 14 C -0.015 4.015 15 O -0.228 6.228 16 C 0.050 3.950 17 C -0.121 4.121 18 C -0.062 4.062 19 Cl -0.011 7.011 20 C -0.067 4.067 21 Cl -0.020 7.020 22 C -0.138 4.138 23 C -0.039 4.039 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.374 -21.521 1.525 22.234 hybrid contribution -0.718 1.234 0.243 1.448 sum 4.657 -20.287 1.768 20.890 Atomic orbital electron populations 1.70100 1.07807 1.27675 1.51799 1.25964 0.95718 1.03347 0.94843 0.85427 0.79245 0.78928 0.77629 1.18325 1.20644 1.20571 1.21694 0.93637 0.92138 1.50246 0.91869 1.18956 0.94382 0.92908 0.94994 1.21533 0.98290 0.91724 1.01705 1.22314 0.93362 0.88641 1.01467 1.58853 1.15438 1.00292 1.45487 1.23067 0.94860 1.01628 0.92609 1.23526 0.92070 0.81500 1.04415 1.86224 1.26253 1.48722 1.61558 1.18536 0.88189 0.93109 0.95206 1.20301 0.93087 0.96726 1.01993 1.20259 0.94817 0.88346 1.02736 1.98378 1.76019 1.29469 1.97214 1.20433 0.90456 0.94478 1.01307 1.98380 1.26994 1.97765 1.78840 1.20806 0.93643 0.97291 1.02094 1.19049 0.93684 0.91896 0.99287 0.92839 0.98822 0.99016 0.91746 0.92005 0.90015 0.94159 0.86257 0.92463 0.89783 0.83016 0.81276 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.52 4.58 30.59 0.14 -3.38 16 11 C 0.07 2.12 4.36 86.30 0.38 2.50 16 12 N -0.49 -13.12 4.76 -694.31 -3.30 -16.42 16 13 C 0.00 0.09 4.84 86.47 0.42 0.51 16 14 C 0.06 1.00 7.26 72.13 0.52 1.52 16 15 O -0.31 -6.73 10.40 -95.53 -0.99 -7.73 16 16 C 0.10 2.33 6.47 22.57 0.15 2.48 16 17 C -0.10 -2.14 9.72 22.40 0.22 -1.93 16 18 C -0.03 -0.74 6.32 22.33 0.14 -0.59 16 19 Cl -0.04 -0.80 27.96 -2.72 -0.08 -0.87 16 20 C -0.04 -0.95 6.32 22.30 0.14 -0.81 16 21 Cl -0.05 -1.15 27.95 -2.72 -0.08 -1.23 16 22 C -0.12 -3.06 8.84 22.47 0.20 -2.86 16 23 C 0.06 1.60 5.81 38.23 0.22 1.82 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.06 2.23 6.43 -2.39 -0.02 2.22 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.61 6.44 -2.39 -0.02 2.59 16 30 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 31 H 0.12 2.49 6.54 -2.39 -0.02 2.47 16 32 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.15 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.15 3.92 6.13 -2.91 -0.02 3.90 16 Total: -1.00 -62.44 325.87 2.34 -60.11 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.10 Total: 4.63 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.37 Total: -28.12 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -3.02 Total: -71.94 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.99 Total: -7.73 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.15 Total: -2.10 kcal Total: -62.44 2.34 -60.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339722457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -62.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds