Wall clock time and date at job start Fri Apr 10 2020 23:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35618 * 124.93658 * 2 1 4 4 C 1.35448 * 107.13571 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 127.23490 * 179.97438 * 4 3 2 6 6 C 1.41537 * 105.52379 * 0.22343 * 4 3 2 7 7 C 1.47673 * 126.46015 * 179.77581 * 6 4 3 8 8 O 1.21580 * 120.00088 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00503 * 180.02562 * 7 6 4 10 10 C 1.46490 * 120.00609 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47419 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46835 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99886 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47153 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47017 * 120.00389 * 17 15 13 20 20 H 1.48504 * 109.47138 * 240.00423 * 17 15 13 21 21 N 1.28476 * 124.93190 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46647 * 89.99991 * 1 2 3 23 23 H 1.08996 * 109.47502 * 209.99742 * 1 2 3 24 24 H 1.08998 * 109.46935 * 330.00235 * 1 2 3 25 25 H 1.07998 * 126.42974 * 0.03394 * 3 2 1 26 26 H 0.97009 * 119.99099 * 359.97438 * 9 7 6 27 27 H 1.09007 * 109.47149 * 299.99345 * 10 9 7 28 28 H 1.09004 * 109.47279 * 59.99342 * 10 9 7 29 29 H 1.09007 * 109.46514 * 299.99843 * 11 10 9 30 30 H 1.08998 * 109.46999 * 59.99776 * 11 10 9 31 31 H 1.09005 * 109.46754 * 299.99461 * 12 11 10 32 32 H 1.08990 * 109.47590 * 59.99692 * 12 11 10 33 33 H 0.97003 * 119.99392 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5313 0.6977 0.0006 5 35 5.0810 1.7814 0.0002 6 6 3.4750 -0.7165 -0.0044 7 6 4.6269 -1.6406 -0.0104 8 8 5.7600 -1.1997 -0.0120 9 7 4.4223 -2.9727 -0.0153 10 6 5.5650 -3.8894 -0.0207 11 6 5.0602 -5.3337 -0.0249 12 6 6.2536 -6.2911 -0.0299 13 6 5.7564 -7.7136 -0.0334 14 1 4.6953 -7.9148 -0.0325 15 6 6.6561 -8.7584 -0.0387 16 7 7.9482 -8.5134 -0.0402 17 14 6.0398 -10.5218 -0.0422 18 1 4.5547 -10.5271 -0.0391 19 1 6.5343 -11.2165 -1.2580 20 1 6.5403 -11.2236 1.1670 21 7 2.2006 -1.0533 0.0005 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.8966 2.1351 0.0005 26 1 3.5182 -3.3244 -0.0144 27 1 6.1684 -3.7125 -0.9111 28 1 6.1715 -3.7193 0.8689 29 1 4.4569 -5.5103 0.8657 30 1 4.4535 -5.5040 -0.9143 31 1 6.8572 -6.1146 -0.9203 32 1 6.8599 -6.1207 0.8596 33 1 8.5812 -9.2485 -0.0436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339938869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:40 Heat of formation + Delta-G solvation = 10.452504 kcal Electronic energy + Delta-G solvation = -17476.874477 eV Core-core repulsion = 14391.485517 eV Total energy + Delta-G solvation = -3085.388960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.76465 -40.46618 -36.98161 -35.21665 -34.68016 -33.28088 -32.61496 -30.59727 -29.19662 -27.87413 -25.28236 -23.52709 -22.44934 -22.25250 -21.02692 -18.95949 -18.46339 -17.47206 -17.46576 -16.79140 -16.57949 -16.39028 -15.30431 -15.23394 -14.81436 -14.52210 -14.19566 -13.81654 -13.74643 -13.43290 -13.40640 -12.77069 -12.56030 -12.41618 -12.30565 -12.16164 -11.75875 -11.68511 -11.40710 -11.17983 -10.70925 -10.55338 -10.44660 -10.11778 -9.80595 -8.18816 -6.30190 0.35561 0.60597 0.78191 1.42043 1.42379 1.55629 1.57734 2.14379 2.21762 2.43200 3.14899 3.28713 3.66717 3.90064 4.16342 4.21166 4.29657 4.43233 4.44214 4.55233 4.73407 4.79387 4.94102 4.97559 5.16409 5.38210 5.52568 5.65144 5.71272 5.84844 6.23016 6.38954 6.70420 6.87099 7.12179 7.39198 8.93574 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002748 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.535957 B =10186.615761 C =11335.098352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.270 5.270 3 C 0.046 3.954 4 C -0.189 4.189 5 Br 0.000 7.000 6 C -0.015 4.015 7 C 0.586 3.414 8 O -0.551 6.551 9 N -0.704 5.704 10 C 0.131 3.869 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.065 0.935 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.279 1.279 21 N -0.258 5.258 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.136 0.864 25 H 0.238 0.762 26 H 0.414 0.586 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 25.816 0.170 32.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.058 5.058 3 C -0.100 4.100 4 C -0.279 4.279 5 Br 0.083 6.917 6 C -0.176 4.176 7 C 0.371 3.629 8 O -0.427 6.427 9 N -0.355 5.355 10 C 0.008 3.992 11 C -0.140 4.140 12 C -0.013 4.013 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.205 1.205 20 H -0.205 1.205 21 N -0.096 5.096 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.254 0.746 26 H 0.250 0.750 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.119 25.483 0.171 31.858 hybrid contribution 0.235 -0.791 -0.023 0.826 sum -18.884 24.692 0.149 31.085 Atomic orbital electron populations 1.22808 0.68992 1.07925 1.06704 1.46137 1.09682 1.01973 1.48049 1.23435 0.87657 0.95827 1.03118 1.22191 0.94731 0.93148 1.17874 1.96663 1.33671 1.63386 1.97950 1.21621 0.91317 0.92953 1.11723 1.17232 0.86960 0.82041 0.76673 1.90826 1.23470 1.77430 1.51017 1.45848 1.11120 1.04909 1.73634 1.21324 0.87957 0.88744 1.01214 1.21603 0.99074 0.91270 1.02013 1.18939 0.93464 0.93695 0.95234 1.21704 0.93483 0.92266 1.50412 0.91639 1.26028 0.94988 1.04334 0.94776 1.70121 1.02343 1.33313 1.51715 0.85354 0.79013 0.78734 0.77651 1.18249 1.20526 1.20516 1.73566 1.01751 1.15355 1.18896 0.87505 0.87774 0.84620 0.74565 0.74971 0.92607 0.92612 0.91531 0.91532 0.98766 0.98759 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.32 127.77 1.45 1.61 16 2 N -0.27 -3.74 3.72 -368.91 -1.37 -5.11 16 3 C 0.05 0.63 11.48 83.46 0.96 1.59 16 4 C -0.19 -4.46 6.68 22.44 0.15 -4.31 16 5 Br 0.00 -0.01 32.70 -20.37 -0.67 -0.68 16 6 C -0.02 -0.43 7.13 42.45 0.30 -0.13 16 7 C 0.59 20.32 7.82 86.74 0.68 21.00 16 8 O -0.55 -22.45 15.60 -3.97 -0.06 -22.51 16 9 N -0.70 -23.02 5.55 -466.13 -2.59 -25.61 16 10 C 0.13 4.97 5.67 86.38 0.49 5.46 16 11 C -0.10 -4.14 5.27 30.60 0.16 -3.98 16 12 C 0.02 1.30 4.97 29.85 0.15 1.45 16 13 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 14 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 15 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 16 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 17 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 N -0.26 -5.86 11.66 -48.18 -0.56 -6.42 16 22 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 23 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.14 -0.65 8.13 -2.39 -0.02 -0.67 16 25 H 0.24 0.81 8.06 -2.91 -0.02 0.79 16 26 H 0.41 11.65 8.19 -92.70 -0.76 10.89 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -77.67 313.86 2.46 -75.21 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 0.37 Total: 3.81 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.03 Total: -7.61 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.24 Total: -94.65 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.67 Total: -0.68 kcal Total: -77.67 2.46 -75.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339938869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.660 kcal (2) G-P(sol) polarization free energy of solvation -77.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds