Wall clock time and date at job start Fri Apr 10 2020 23:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47492 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47386 * 30.00568 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00525 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99908 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 C 1.38268 * 119.98317 * 269.72504 * 16 15 14 18 18 C 1.38198 * 120.03954 * 179.76907 * 17 16 15 19 19 C 1.38349 * 120.00151 * 0.50823 * 18 17 16 20 20 Cl 1.73600 * 120.02150 * 179.72639 * 19 18 17 21 21 C 1.38449 * 119.95620 * 359.74424 * 19 18 17 22 22 Cl 1.73604 * 120.01386 * 180.02562 * 21 19 18 23 23 C 1.38201 * 119.98169 * 90.00059 * 16 15 14 24 24 H 0.96996 * 119.99562 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 26 26 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 27 27 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 29 29 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 30 30 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 31 31 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 32 32 H 1.08992 * 109.47554 * 299.99696 * 15 14 13 33 33 H 1.08996 * 109.47261 * 60.00229 * 15 14 13 34 34 H 1.08004 * 119.97769 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.00126 * 180.25289 * 18 17 16 36 36 H 1.08001 * 119.99749 * 359.95819 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1130 -1.8999 -0.0005 13 6 5.8272 -4.2425 -0.0014 14 6 7.3572 -4.2426 -0.0006 15 6 7.8671 -5.6851 -0.0004 16 6 9.3741 -5.6851 -0.0002 17 6 10.0652 -5.6909 -1.1978 18 6 11.4472 -5.6862 -1.1990 19 6 12.1400 -5.6861 -0.0015 20 17 13.8760 -5.6873 -0.0024 21 6 11.4480 -5.6855 1.1976 22 17 12.3159 -5.6848 2.7012 23 6 10.0646 -5.6850 1.1969 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6802 -0.8911 27 1 3.3695 -3.3126 -0.0010 28 1 5.4638 -4.7566 0.8884 29 1 5.4639 -4.7561 -0.8915 30 1 7.7209 -3.7283 -0.8901 31 1 7.7201 -3.7291 0.8899 32 1 7.5033 -6.1989 0.8893 33 1 7.5042 -6.1988 -0.8906 34 1 9.5247 -5.6951 -2.1328 35 1 11.9864 -5.6866 -2.1348 36 1 9.5241 -5.6842 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340456352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:46 Heat of formation + Delta-G solvation = -52.768646 kcal Electronic energy + Delta-G solvation = -19960.836443 eV Core-core repulsion = 16495.550107 eV Total energy + Delta-G solvation = -3465.286336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02718 -39.01929 -37.07612 -36.86912 -34.99562 -34.23552 -32.38992 -31.46469 -31.19088 -28.41417 -26.72282 -23.41886 -23.26148 -21.82420 -21.07611 -19.80004 -17.74918 -17.21131 -16.56082 -16.15805 -15.78616 -15.48183 -15.25645 -14.49866 -14.39991 -14.26339 -13.90941 -13.85912 -13.10986 -12.89467 -12.64453 -12.39003 -12.23542 -12.17276 -12.05218 -11.65096 -11.57345 -11.33139 -11.30067 -11.15855 -10.98465 -10.79439 -10.75456 -9.99152 -9.51975 -9.34635 -9.23308 -8.94092 -8.79950 -8.17044 -6.23717 -4.26033 0.55823 0.70435 1.48147 1.85216 3.03289 3.21355 3.25872 3.31981 3.40402 3.94494 4.20815 4.31295 4.33439 4.66503 4.71172 4.81652 4.98415 5.04839 5.11505 5.12012 5.27045 5.41563 5.52427 5.55638 5.58469 5.64133 5.78044 5.92640 6.16277 6.21011 6.28266 6.79216 7.05061 7.20668 7.37630 8.11294 8.49894 8.72881 8.92112 9.36578 10.88202 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002030 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.817647 B =13789.732987 C =13927.836433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.707 5.707 11 C 0.497 3.503 12 O -0.560 6.560 13 C -0.141 4.141 14 C -0.098 4.098 15 C -0.084 4.084 16 C -0.057 4.057 17 C -0.100 4.100 18 C -0.096 4.096 19 C -0.039 4.039 20 Cl -0.054 7.054 21 C -0.028 4.028 22 Cl -0.052 7.052 23 C -0.097 4.097 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.397 0.603 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.637 -16.962 -0.256 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.440 6.440 13 C -0.181 4.181 14 C -0.136 4.136 15 C -0.121 4.121 16 C -0.057 4.057 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.067 4.067 20 Cl -0.025 7.025 21 C -0.055 4.055 22 Cl -0.023 7.023 23 C -0.116 4.116 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.239 -16.156 -0.111 29.130 hybrid contribution 0.200 0.582 0.123 0.628 sum 24.439 -15.574 0.012 28.979 Atomic orbital electron populations 1.69881 1.06211 1.27445 1.49409 1.24812 0.94807 0.99217 0.93866 0.86807 0.80569 0.83205 0.79051 1.19852 1.20886 1.18518 1.21100 0.88553 0.95209 1.53337 0.90259 1.19481 0.95229 0.78864 0.96718 1.46218 1.05884 1.10993 1.72454 1.20587 0.83062 0.91036 0.77087 1.90654 1.55565 1.46638 1.51160 1.21673 0.96950 0.95352 1.04161 1.21303 0.93628 0.94456 1.04191 1.20740 0.89283 0.98335 1.03786 1.20012 0.96717 0.96858 0.92156 1.21185 0.93152 0.98894 0.98610 1.21050 0.94349 0.99656 0.96449 1.20777 0.85549 1.06719 0.93627 1.98389 1.08480 1.96796 1.98884 1.20778 0.92631 1.05549 0.86579 1.98396 1.76401 1.96716 1.30754 1.20988 0.90932 1.00124 0.99514 0.92250 0.95776 0.96230 0.76996 0.89157 0.89148 0.90882 0.90913 0.90237 0.90123 0.84221 0.84022 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.54 -14.79 9.83 -34.44 -0.34 -15.13 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16 10 N -0.71 -13.83 5.55 -61.48 -0.34 -14.17 16 11 C 0.50 8.89 7.83 -10.98 -0.09 8.81 16 12 O -0.56 -12.32 15.98 5.56 0.09 -12.23 16 13 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 14 C -0.10 -1.04 4.49 -26.73 -0.12 -1.16 16 15 C -0.08 -0.62 5.35 -27.88 -0.15 -0.77 16 16 C -0.06 -0.47 5.13 -104.62 -0.54 -1.00 16 17 C -0.10 -0.75 9.70 -39.59 -0.38 -1.14 16 18 C -0.10 -0.75 9.83 -39.56 -0.39 -1.14 16 19 C -0.04 -0.36 6.32 -39.46 -0.25 -0.61 16 20 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 21 C -0.03 -0.27 6.32 -39.47 -0.25 -0.51 16 22 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 23 C -0.10 -0.84 9.48 -39.56 -0.38 -1.22 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.40 6.71 8.32 -40.82 -0.34 6.38 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -32.26 341.65 -9.54 -41.79 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.48 Total: 0.45 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.16 Total: -8.26 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.43 Total: -39.72 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.90 Total: -3.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.26 -9.54 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.975 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds