Wall clock time and date at job start Fri Apr 10 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47492 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47386 * 30.00568 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00525 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99908 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 C 1.38268 * 119.98317 * 269.72504 * 16 15 14 18 18 C 1.38198 * 120.03954 * 179.76907 * 17 16 15 19 19 C 1.38349 * 120.00151 * 0.50823 * 18 17 16 20 20 Cl 1.73600 * 120.02150 * 179.72639 * 19 18 17 21 21 C 1.38449 * 119.95620 * 359.74424 * 19 18 17 22 22 Cl 1.73604 * 120.01386 * 180.02562 * 21 19 18 23 23 C 1.38201 * 119.98169 * 90.00059 * 16 15 14 24 24 H 0.96996 * 119.99562 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 26 26 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 27 27 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 29 29 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 30 30 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 31 31 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 32 32 H 1.08992 * 109.47554 * 299.99696 * 15 14 13 33 33 H 1.08996 * 109.47261 * 60.00229 * 15 14 13 34 34 H 1.08004 * 119.97769 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.00126 * 180.25289 * 18 17 16 36 36 H 1.08001 * 119.99749 * 359.95819 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1130 -1.8999 -0.0005 13 6 5.8272 -4.2425 -0.0014 14 6 7.3572 -4.2426 -0.0006 15 6 7.8671 -5.6851 -0.0004 16 6 9.3741 -5.6851 -0.0002 17 6 10.0652 -5.6909 -1.1978 18 6 11.4472 -5.6862 -1.1990 19 6 12.1400 -5.6861 -0.0015 20 17 13.8760 -5.6873 -0.0024 21 6 11.4480 -5.6855 1.1976 22 17 12.3159 -5.6848 2.7012 23 6 10.0646 -5.6850 1.1969 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6802 -0.8911 27 1 3.3695 -3.3126 -0.0010 28 1 5.4638 -4.7566 0.8884 29 1 5.4639 -4.7561 -0.8915 30 1 7.7209 -3.7283 -0.8901 31 1 7.7201 -3.7291 0.8899 32 1 7.5033 -6.1989 0.8893 33 1 7.5042 -6.1988 -0.8906 34 1 9.5247 -5.6951 -2.1328 35 1 11.9864 -5.6866 -2.1348 36 1 9.5241 -5.6842 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340456352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:44 Heat of formation + Delta-G solvation = -72.009117 kcal Electronic energy + Delta-G solvation = -19961.670772 eV Core-core repulsion = 16495.550107 eV Total energy + Delta-G solvation = -3466.120665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.74711 -40.38052 -37.75661 -37.54962 -36.25414 -35.57750 -34.38853 -32.26039 -31.86759 -30.08137 -27.76409 -24.59442 -23.98310 -23.23190 -21.87305 -21.25873 -19.13859 -18.31371 -17.58973 -17.23564 -16.98010 -16.60101 -16.58835 -15.92120 -15.26821 -15.16270 -14.95558 -14.81789 -14.57593 -14.24293 -14.04305 -13.70225 -13.07017 -13.04203 -12.93160 -12.85392 -12.71938 -12.47105 -12.29861 -12.01158 -11.95214 -11.94065 -11.82470 -11.64780 -11.52893 -10.92059 -10.75036 -9.96142 -9.88735 -9.59431 -8.40287 -6.46871 -0.07770 0.09903 0.81008 1.19926 1.31883 1.34588 1.46809 1.81515 2.27565 2.39335 2.60355 2.95119 3.61086 3.69540 3.93657 4.06756 4.12953 4.21687 4.29216 4.36254 4.60967 4.66434 4.77467 4.80863 4.87528 4.96192 4.99826 5.03401 5.09800 5.19007 5.27385 5.45073 5.52449 5.58318 5.66342 6.09642 6.54861 6.90505 7.16499 7.48746 8.74320 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002030 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.817647 B =13789.732987 C =13927.836433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.605 6.605 13 C -0.127 4.127 14 C -0.094 4.094 15 C -0.074 4.074 16 C -0.063 4.063 17 C -0.099 4.099 18 C -0.099 4.099 19 C -0.053 4.053 20 Cl -0.059 7.059 21 C -0.044 4.044 22 Cl -0.060 7.060 23 C -0.105 4.105 24 H 0.272 0.728 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.410 0.590 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.185 -18.112 -0.957 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.106 3.894 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.487 6.487 13 C -0.167 4.167 14 C -0.132 4.132 15 C -0.111 4.111 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.080 4.080 20 Cl -0.030 7.030 21 C -0.072 4.072 22 Cl -0.031 7.031 23 C -0.123 4.123 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.246 0.754 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 24.789 -17.346 -0.813 30.266 hybrid contribution 0.024 0.887 0.327 0.945 sum 24.813 -16.459 -0.486 29.780 Atomic orbital electron populations 1.69980 1.07628 1.28573 1.50758 1.25612 0.95556 1.02670 0.93696 0.85864 0.79185 0.79451 0.79419 1.18995 1.19851 1.18677 1.21317 0.90015 0.94582 1.52434 0.92078 1.19057 0.93319 0.81661 0.95380 1.46106 1.07233 1.09417 1.73126 1.21762 0.81705 0.93466 0.74969 1.90635 1.56402 1.48864 1.52794 1.21724 0.97224 0.90688 1.07050 1.21235 0.93022 0.96452 1.02466 1.20682 0.88466 0.96106 1.05797 1.20188 0.97318 0.96766 0.92122 1.21511 0.93108 0.97683 0.99399 1.21327 0.94775 0.98999 0.96661 1.20984 0.85498 1.07381 0.94168 1.98382 1.08884 1.96858 1.98906 1.20944 0.93116 1.06632 0.86470 1.98386 1.76627 1.96826 1.31253 1.21176 0.90737 1.00071 1.00342 0.91873 0.97349 0.97329 0.75419 0.86265 0.85899 0.92431 0.93075 0.88629 0.87759 0.81926 0.82247 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.96 21.45 0.30 -54.88 16 2 C 0.02 1.40 5.47 84.66 0.46 1.87 16 3 Si 0.94 44.01 27.47 68.60 1.88 45.89 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 7 C -0.55 -29.77 9.83 25.60 0.25 -29.52 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.23 11.15 4.50 85.63 0.39 11.54 16 10 N -0.71 -26.92 5.55 -466.80 -2.59 -29.51 16 11 C 0.49 16.84 7.83 87.66 0.69 17.52 16 12 O -0.60 -26.32 15.98 -3.02 -0.05 -26.37 16 13 C -0.13 -2.47 5.70 29.85 0.17 -2.30 16 14 C -0.09 -1.75 4.49 30.59 0.14 -1.61 16 15 C -0.07 -0.81 5.35 29.85 0.16 -0.65 16 16 C -0.06 -0.88 5.13 -19.87 -0.10 -0.98 16 17 C -0.10 -1.22 9.70 22.27 0.22 -1.01 16 18 C -0.10 -1.36 9.83 22.29 0.22 -1.14 16 19 C -0.05 -0.92 6.32 22.35 0.14 -0.78 16 20 Cl -0.06 -1.03 27.96 -2.72 -0.08 -1.11 16 21 C -0.04 -0.81 6.32 22.34 0.14 -0.67 16 22 Cl -0.06 -1.12 27.96 -2.72 -0.08 -1.20 16 23 C -0.10 -1.68 9.48 22.29 0.21 -1.47 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 26 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16 27 H 0.41 13.22 8.32 -92.71 -0.77 12.45 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 32 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -70.74 341.65 2.75 -67.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.28 Total: 8.39 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 3.08 Total: -9.20 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.29 Total: -84.39 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.15 Total: -2.31 kcal Total: -70.74 2.75 -67.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.023 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds