Wall clock time and date at job start Fri Apr 10 2020 23:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99996 * 2 1 4 4 O 1.20828 * 119.99761 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00252 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47233 * 180.02562 * 5 3 2 7 7 C 1.36885 * 119.99656 * 264.18049 * 6 5 3 8 8 H 1.08004 * 119.99660 * 203.48640 * 7 6 5 9 9 C 1.39037 * 120.00339 * 23.48657 * 7 6 5 10 10 N 1.31367 * 119.99870 * 7.23132 * 9 7 6 11 11 Si 1.86799 * 120.00175 * 187.23148 * 9 7 6 12 12 H 1.48504 * 109.47184 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47129 * 120.00031 * 11 9 7 14 14 H 1.48497 * 109.47051 * 240.00023 * 11 9 7 15 15 C 1.34772 * 120.00364 * 84.18080 * 6 5 3 16 16 O 1.21603 * 119.99752 * 5.46344 * 15 6 5 17 17 C 1.47654 * 120.00339 * 185.47095 * 15 6 5 18 18 C 1.39674 * 120.15208 * 43.53060 * 17 15 6 19 19 C 1.38108 * 119.83303 * 179.79683 * 18 17 15 20 20 F 1.35096 * 119.93001 * 180.21156 * 19 18 17 21 21 C 1.38636 * 120.13700 * 0.46295 * 19 18 17 22 22 C 1.38263 * 120.30207 * 359.78775 * 21 19 18 23 23 C 1.38128 * 120.16710 * 359.97438 * 22 21 19 24 24 Cl 1.73600 * 120.07324 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.47094 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47050 * 299.99196 * 1 2 3 27 27 H 1.08994 * 109.47648 * 59.99912 * 1 2 3 28 28 H 1.09006 * 109.46658 * 59.99874 * 5 3 2 29 29 H 1.09006 * 109.46956 * 300.00689 * 5 3 2 30 30 H 0.97001 * 119.99855 * 179.97438 * 10 9 7 31 31 H 1.07999 * 120.08136 * 0.02562 * 18 17 15 32 32 H 1.07995 * 119.85249 * 179.76588 * 21 19 18 33 33 H 1.08001 * 119.91471 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6797 0.0011 7 6 4.2914 3.3022 -1.1780 8 1 4.9380 4.1673 -1.1783 9 6 3.7737 2.8209 -2.3753 10 7 2.8775 1.8604 -2.3644 11 14 4.3524 3.5398 -3.9993 12 1 5.3578 4.6016 -3.7404 13 1 4.9650 2.4681 -4.8248 14 1 3.1942 4.1217 -4.7239 15 6 4.0588 3.3593 1.1624 16 8 3.8807 2.7819 2.2177 17 6 4.3594 4.8049 1.1534 18 6 3.7340 5.6458 0.2300 19 6 4.0169 6.9976 0.2302 20 9 3.4099 7.8134 -0.6593 21 6 4.9263 7.5183 1.1378 22 6 5.5526 6.6902 2.0509 23 6 5.2753 5.3371 2.0650 24 17 6.0636 4.2995 3.2121 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 2.5160 1.5249 -3.1996 31 1 3.0282 5.2405 -0.4799 32 1 5.1470 8.5754 1.1314 33 1 6.2604 7.1024 2.7548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340561282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:48 Heat of formation + Delta-G solvation = -141.735153 kcal Electronic energy + Delta-G solvation = -24596.826323 eV Core-core repulsion = 20563.512641 eV Total energy + Delta-G solvation = -4033.313683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.94065 -41.53145 -40.65882 -39.14821 -37.38761 -37.24046 -36.55974 -33.58544 -32.64354 -31.22401 -30.12389 -27.90549 -26.89091 -24.74714 -23.70884 -22.19429 -21.29190 -19.85065 -18.53322 -18.32537 -17.75000 -17.61812 -17.39288 -17.18059 -16.90309 -16.62632 -16.19317 -16.09204 -15.28308 -15.04575 -14.62357 -14.42929 -14.31529 -14.15413 -13.85595 -13.49152 -13.36839 -13.11613 -12.90666 -12.72435 -12.54781 -12.54079 -12.18410 -12.06793 -11.90900 -11.58013 -11.50679 -10.99054 -10.64488 -10.09607 -9.91537 -9.58558 -8.43273 -6.05485 -0.26556 0.02687 1.13798 1.37307 1.44321 1.56087 1.66083 1.78799 2.12482 2.27816 2.47279 2.74009 3.03698 3.24130 3.70345 3.83957 4.06847 4.18007 4.25717 4.34793 4.40562 4.46453 4.57866 4.69879 4.77243 4.86392 4.95477 4.99370 5.14700 5.33563 5.57337 5.68756 5.69234 6.26712 6.98379 7.19490 7.34855 7.74984 8.62513 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.006665 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.200474 B = 4200.307748 C = 5457.758740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.492 3.508 4 O -0.541 6.541 5 C 0.155 3.845 6 N -0.427 5.427 7 C -0.341 4.341 8 H 0.107 0.893 9 C 0.004 3.996 10 N -0.895 5.895 11 Si 0.988 3.012 12 H -0.258 1.258 13 H -0.270 1.270 14 H -0.286 1.286 15 C 0.497 3.503 16 O -0.603 6.603 17 C -0.082 4.082 18 C -0.103 4.103 19 C 0.083 3.917 20 F -0.139 7.139 21 C -0.110 4.110 22 C -0.080 4.080 23 C -0.025 4.025 24 Cl -0.053 7.053 25 H 0.134 0.866 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.275 0.725 31 H 0.129 0.871 32 H 0.188 0.812 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 5.691 2.950 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.335 3.665 4 O -0.430 6.430 5 C 0.030 3.970 6 N -0.144 5.144 7 C -0.468 4.468 8 H 0.124 0.876 9 C -0.198 4.198 10 N -0.534 5.534 11 Si 0.812 3.188 12 H -0.181 1.181 13 H -0.195 1.195 14 H -0.212 1.212 15 C 0.287 3.713 16 O -0.490 6.490 17 C -0.086 4.086 18 C -0.123 4.123 19 C 0.063 3.937 20 F -0.117 7.117 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.053 4.053 24 Cl -0.024 7.024 25 H 0.152 0.848 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.206 0.794 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.762 5.476 3.365 7.447 hybrid contribution -0.657 -0.070 -1.209 1.378 sum 3.105 5.405 2.156 6.596 Atomic orbital electron populations 1.23287 0.76186 1.04852 1.01155 1.86418 1.24071 1.33698 1.85011 1.23920 0.92459 0.80776 0.69359 1.90477 1.67361 1.37692 1.47428 1.20532 0.87231 0.85188 1.04041 1.43368 1.56259 1.08552 1.06260 1.19945 1.28935 1.14921 0.82991 0.87552 1.26057 0.94431 0.96638 1.02669 1.69712 1.26861 1.27868 1.28939 0.84922 0.78089 0.78654 0.77175 1.18113 1.19505 1.21219 1.18301 0.82303 0.86836 0.83882 1.90643 1.56946 1.69953 1.31474 1.19551 0.98428 0.93989 0.96603 1.21307 1.00639 0.92183 0.98165 1.17728 0.97091 0.87117 0.91738 1.91492 1.81969 1.71718 1.66542 1.21533 0.94988 1.02921 0.93422 1.21186 1.00284 0.88827 0.99506 1.21228 0.97186 0.93032 0.93888 1.98365 1.78256 1.67790 1.57943 0.84802 0.93178 0.93593 0.85409 0.89315 0.91511 0.85264 0.79438 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.03 10.57 -51.40 -0.54 -16.57 16 3 C 0.49 24.48 6.00 71.24 0.43 24.90 16 4 O -0.54 -30.27 15.69 21.96 0.34 -29.92 16 5 C 0.16 7.50 5.18 85.64 0.44 7.95 16 6 N -0.43 -21.50 2.17 -643.08 -1.39 -22.89 16 7 C -0.34 -16.70 7.33 84.10 0.62 -16.09 16 8 H 0.11 5.03 6.19 -2.91 -0.02 5.01 16 9 C 0.00 0.21 5.16 84.95 0.44 0.64 16 10 N -0.90 -45.08 8.70 21.68 0.19 -44.89 16 11 Si 0.99 38.76 29.56 68.60 2.03 40.78 16 12 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 13 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 14 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 15 C 0.50 24.67 6.64 86.73 0.58 25.24 16 16 O -0.60 -32.00 15.17 -4.04 -0.06 -32.06 16 17 C -0.08 -3.47 5.02 -20.08 -0.10 -3.57 16 18 C -0.10 -4.14 7.78 22.59 0.18 -3.96 16 19 C 0.08 2.64 7.29 22.33 0.16 2.80 16 20 F -0.14 -4.41 17.26 44.97 0.78 -3.63 16 21 C -0.11 -2.57 10.02 22.37 0.22 -2.35 16 22 C -0.08 -1.96 9.81 22.25 0.22 -1.74 16 23 C -0.03 -0.87 6.34 22.61 0.14 -0.73 16 24 Cl -0.05 -1.82 26.97 -2.72 -0.07 -1.89 16 25 H 0.13 3.17 8.14 -2.38 -0.02 3.15 16 26 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 27 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 28 H 0.13 6.12 6.44 -2.38 -0.02 6.10 16 29 H 0.09 4.07 7.53 -2.38 -0.02 4.05 16 30 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 31 H 0.13 5.99 6.90 -2.91 -0.02 5.97 16 32 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -66.07 310.42 6.96 -59.10 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.17 Total: 16.37 kcal Atomic # 6 Polarization: 31.08 SS G_CDS: 4.52 Total: 35.60 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -1.20 Total: -67.78 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: -0.26 Total: -78.55 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -66.07 6.96 -59.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340561282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.632 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds