Wall clock time and date at job start Fri Apr 10 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.47071 * 179.97438 * 14 12 11 16 16 C 1.36270 * 117.00166 * 179.97438 * 15 14 12 17 17 C 1.38685 * 122.59810 * 359.74767 * 16 15 14 18 18 C 1.33411 * 114.89609 * 179.75288 * 17 16 15 19 19 S 1.75864 * 109.67262 * 0.47763 * 18 17 16 20 20 C 1.33703 * 122.59951 * 180.02562 * 16 15 14 21 21 Cl 1.73597 * 125.19979 * 0.02562 * 20 16 15 22 22 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 23 23 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 24 24 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 25 25 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 26 26 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 27 27 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 28 28 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 29 29 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 30 30 H 1.08008 * 122.54950 * 359.96086 * 17 16 15 31 31 H 1.07996 * 125.16560 * 180.19829 * 18 17 16 32 32 H 1.09003 * 117.49648 * 359.97438 * 22 9 7 33 33 H 1.08991 * 117.50066 * 145.01997 * 22 9 7 34 34 H 1.08996 * 117.49909 * 214.98045 * 23 9 7 35 35 H 1.09006 * 117.50020 * 359.97109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 8 3.0646 -4.5958 5.5262 16 6 4.1120 -4.9250 6.3333 17 6 5.4337 -4.7660 5.9444 18 6 6.3356 -5.1324 6.8566 19 16 5.5155 -5.7283 8.2938 20 6 3.9452 -5.4313 7.5595 21 17 2.4130 -5.7477 8.3116 22 6 1.5730 -3.5796 -0.9302 23 6 0.2452 -2.8210 -1.0000 24 1 -0.4850 0.8369 -0.0732 25 1 0.3751 -2.1632 2.0411 26 1 0.3015 -3.8512 1.4812 27 1 3.0164 -3.0733 1.8316 28 1 3.9649 -4.7929 3.6769 29 1 3.9584 -3.1474 4.3556 30 1 5.7116 -4.3721 4.9779 31 1 7.4066 -5.0763 6.7300 32 1 2.3246 -3.3491 -1.6853 33 1 1.5428 -4.6172 -0.5978 34 1 -0.6578 -3.3599 -0.7135 35 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341658191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:53 Heat of formation + Delta-G solvation = -16.948744 kcal Electronic energy + Delta-G solvation = -20856.889908 eV Core-core repulsion = 17395.200546 eV Total energy + Delta-G solvation = -3461.689362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25197 -38.86108 -36.85478 -36.62758 -35.84947 -33.42957 -32.01886 -30.14828 -28.19655 -25.96631 -24.89117 -24.22768 -21.25298 -20.37383 -19.76084 -19.30172 -18.69592 -17.47176 -16.55948 -16.39785 -15.80566 -15.53794 -14.79405 -14.52087 -14.48197 -14.18244 -13.85055 -13.68570 -13.36477 -13.00878 -12.70346 -12.20939 -11.93016 -11.71271 -11.63527 -11.39637 -11.12027 -11.04695 -10.98722 -10.84155 -10.58223 -10.28815 -9.67915 -9.38661 -9.11225 -8.92802 -8.55824 -8.37275 -8.26769 -8.17960 -6.12759 -4.23425 0.52356 0.87384 1.40522 2.14863 2.29737 2.94001 2.99688 3.21527 3.30207 3.30585 4.02506 4.30184 4.39892 4.80063 4.88348 5.05333 5.08830 5.15430 5.27408 5.34295 5.48856 5.80382 5.96403 6.27812 6.40954 6.48862 6.64907 6.78053 6.96226 7.07352 7.17223 7.32628 7.47877 7.75245 8.11690 8.27213 8.69350 8.78338 9.44280 10.94260 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002846 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.666198 B = 9834.312274 C =10278.208920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.165 3.835 11 N -0.698 5.698 12 C 0.506 3.494 13 O -0.531 6.531 14 C 0.040 3.960 15 O -0.266 6.266 16 C 0.124 3.876 17 C -0.186 4.186 18 C -0.180 4.180 19 S 0.166 5.834 20 C -0.205 4.205 21 Cl -0.001 7.001 22 C -0.211 4.211 23 C -0.141 4.141 24 H 0.262 0.738 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.402 0.598 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.481 -10.405 12.425 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.042 3.958 11 N -0.349 5.349 12 C 0.289 3.711 13 O -0.408 6.408 14 C -0.039 4.039 15 O -0.179 6.179 16 C 0.066 3.934 17 C -0.218 4.218 18 C -0.316 4.316 19 S 0.426 5.574 20 C -0.349 4.349 21 Cl 0.027 6.973 22 C -0.248 4.248 23 C -0.179 4.179 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.236 0.764 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.174 0.826 31 H 0.195 0.805 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.612 -11.035 14.350 22.062 hybrid contribution 0.411 1.697 -1.760 2.479 sum 13.022 -9.338 12.590 20.379 Atomic orbital electron populations 1.69985 1.05903 1.26981 1.48011 1.24997 0.94827 0.99014 0.94242 0.86619 0.79895 0.83533 0.78124 1.20668 1.21143 1.19804 1.20337 0.92613 0.88542 1.52543 0.92168 1.19036 0.99568 0.93364 0.85780 1.21057 0.83636 0.98147 0.92921 1.45836 1.11749 1.62898 1.14436 1.19830 0.89761 0.79090 0.82432 1.90730 1.30296 1.52393 1.67345 1.22627 0.97714 1.00214 0.83341 1.86361 1.28159 1.77818 1.25525 1.17721 0.87575 0.97776 0.90298 1.20221 0.90917 1.07655 1.03014 1.25556 1.03840 1.05247 0.96947 1.84274 0.92319 1.64105 1.16737 1.24120 0.93529 1.19328 0.97906 1.98364 1.24379 1.94265 1.80292 1.23026 1.00771 0.95558 1.05457 1.22471 0.90816 1.01288 1.03360 0.92785 0.91219 0.93929 0.76380 0.89179 0.88984 0.82584 0.80533 0.90347 0.91690 0.91765 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 12.65 55.43 0.70 -23.03 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.50 -12.45 8.59 -34.44 -0.30 -12.74 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 10 C 0.16 3.61 5.50 -4.04 -0.02 3.59 16 11 N -0.70 -12.69 5.48 -60.29 -0.33 -13.02 16 12 C 0.51 9.14 7.91 -10.98 -0.09 9.06 16 13 O -0.53 -12.06 16.50 -14.36 -0.24 -12.29 16 14 C 0.04 0.53 5.33 36.01 0.19 0.72 16 15 O -0.27 -4.13 9.54 -40.51 -0.39 -4.52 16 16 C 0.12 1.59 6.61 -41.01 -0.27 1.31 16 17 C -0.19 -1.72 9.16 -41.10 -0.38 -2.10 16 18 C -0.18 -1.34 11.22 29.05 0.33 -1.01 16 19 S 0.17 1.44 23.34 -107.50 -2.51 -1.07 16 20 C -0.21 -2.55 7.10 29.14 0.21 -2.34 16 21 Cl 0.00 -0.02 29.12 -51.86 -1.51 -1.53 16 22 C -0.21 -4.23 9.96 -26.69 -0.27 -4.49 16 23 C -0.14 -3.16 9.14 -26.70 -0.24 -3.40 16 24 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 25 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 26 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 27 H 0.40 6.38 8.33 -40.82 -0.34 6.04 16 28 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 29 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 30 H 0.16 1.10 6.91 -52.48 -0.36 0.73 16 31 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -30.82 338.84 -9.37 -40.19 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.02 Total: 4.48 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.37 Total: -36.05 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.62 Total: -16.81 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.51 Total: -1.53 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.82 -9.37 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341658191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.245 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds