Wall clock time and date at job start Fri Apr 10 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.47071 * 179.97438 * 14 12 11 16 16 C 1.36270 * 117.00166 * 179.97438 * 15 14 12 17 17 C 1.38685 * 122.59810 * 359.74767 * 16 15 14 18 18 C 1.33411 * 114.89609 * 179.75288 * 17 16 15 19 19 S 1.75864 * 109.67262 * 0.47763 * 18 17 16 20 20 C 1.33703 * 122.59951 * 180.02562 * 16 15 14 21 21 Cl 1.73597 * 125.19979 * 0.02562 * 20 16 15 22 22 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 23 23 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 24 24 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 25 25 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 26 26 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 27 27 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 28 28 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 29 29 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 30 30 H 1.08008 * 122.54950 * 359.96086 * 17 16 15 31 31 H 1.07996 * 125.16560 * 180.19829 * 18 17 16 32 32 H 1.09003 * 117.49648 * 359.97438 * 22 9 7 33 33 H 1.08991 * 117.50066 * 145.01997 * 22 9 7 34 34 H 1.08996 * 117.49909 * 214.98045 * 23 9 7 35 35 H 1.09006 * 117.50020 * 359.97109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 8 3.0646 -4.5958 5.5262 16 6 4.1120 -4.9250 6.3333 17 6 5.4337 -4.7660 5.9444 18 6 6.3356 -5.1324 6.8566 19 16 5.5155 -5.7283 8.2938 20 6 3.9452 -5.4313 7.5595 21 17 2.4130 -5.7477 8.3116 22 6 1.5730 -3.5796 -0.9302 23 6 0.2452 -2.8210 -1.0000 24 1 -0.4850 0.8369 -0.0732 25 1 0.3751 -2.1632 2.0411 26 1 0.3015 -3.8512 1.4812 27 1 3.0164 -3.0733 1.8316 28 1 3.9649 -4.7929 3.6769 29 1 3.9584 -3.1474 4.3556 30 1 5.7116 -4.3721 4.9779 31 1 7.4066 -5.0763 6.7300 32 1 2.3246 -3.3491 -1.6853 33 1 1.5428 -4.6172 -0.5978 34 1 -0.6578 -3.3599 -0.7135 35 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341658191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:52 Heat of formation + Delta-G solvation = -35.683181 kcal Electronic energy + Delta-G solvation = -20857.702294 eV Core-core repulsion = 17395.200546 eV Total energy + Delta-G solvation = -3462.501748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.31340 -40.21516 -38.46616 -37.64456 -36.73758 -35.04184 -33.94805 -31.09960 -29.33407 -27.73153 -26.52954 -24.95471 -22.95383 -21.68477 -21.29937 -20.54694 -19.47599 -18.71303 -18.03414 -17.46246 -17.13286 -16.86159 -16.60970 -15.95647 -15.77664 -15.30994 -14.83499 -14.81397 -14.47346 -14.29928 -14.24537 -13.63753 -13.45684 -13.15203 -12.93374 -12.80477 -12.62431 -12.35228 -12.07794 -12.01560 -12.00317 -11.74686 -11.41395 -10.96599 -10.93671 -10.43526 -10.07126 -9.89485 -9.64398 -9.06892 -8.08185 -6.22929 -0.18901 0.13208 0.70652 1.30487 1.44023 1.47183 1.54138 1.54690 1.58844 1.82681 2.43546 2.84830 3.20189 3.47715 3.65667 3.88513 4.08232 4.14456 4.15087 4.24862 4.55069 4.65246 4.68796 4.72914 4.89609 4.99203 5.03177 5.08697 5.29670 5.52563 5.56739 5.69624 5.79310 6.08824 6.36960 6.68767 6.85983 7.29308 7.47611 8.98697 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002846 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.666198 B = 9834.312274 C =10278.208920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.004 3.996 10 C 0.180 3.820 11 N -0.690 5.690 12 C 0.502 3.498 13 O -0.586 6.586 14 C 0.050 3.950 15 O -0.304 6.304 16 C 0.110 3.890 17 C -0.201 4.201 18 C -0.155 4.155 19 S 0.194 5.806 20 C -0.242 4.242 21 Cl -0.027 7.027 22 C -0.174 4.174 23 C -0.157 4.157 24 H 0.258 0.742 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.416 0.584 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.183 0.817 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.482 -10.947 12.338 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.183 1.183 7 C -0.541 4.541 8 H 0.088 0.912 9 C 0.003 3.997 10 C 0.056 3.944 11 N -0.341 5.341 12 C 0.288 3.712 13 O -0.466 6.466 14 C -0.029 4.029 15 O -0.217 6.217 16 C 0.052 3.948 17 C -0.232 4.232 18 C -0.291 4.291 19 S 0.454 5.546 20 C -0.385 4.385 21 Cl 0.001 6.999 22 C -0.211 4.211 23 C -0.196 4.196 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.253 0.747 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.200 0.800 31 H 0.234 0.766 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.678 -11.587 14.254 24.811 hybrid contribution -0.779 1.815 -1.704 2.608 sum 15.899 -9.772 12.551 22.490 Atomic orbital electron populations 1.70124 1.07398 1.27277 1.49908 1.25739 0.95436 1.02219 0.94436 0.85682 0.79040 0.79661 0.78041 1.20378 1.22257 1.18266 1.20702 0.93181 0.89284 1.50936 0.91195 1.19057 1.00225 0.94103 0.86287 1.20591 0.84917 0.96354 0.92548 1.45644 1.11080 1.62717 1.14664 1.20751 0.91034 0.77426 0.81993 1.90707 1.32963 1.54506 1.68448 1.22643 0.94617 1.02806 0.82785 1.86287 1.30410 1.78485 1.26542 1.18144 0.88450 0.98163 0.90038 1.20401 0.89269 1.08828 1.04704 1.26082 1.05429 1.02308 0.95258 1.84200 0.89913 1.63487 1.16998 1.24601 0.94135 1.20923 0.98821 1.98344 1.26348 1.94504 1.80670 1.23013 0.98714 0.95880 1.03505 1.22393 0.92225 1.01944 1.03003 0.93317 0.95564 0.94413 0.74673 0.85137 0.85929 0.79969 0.76594 0.89379 0.89318 0.91542 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 12.65 21.45 0.27 -50.42 16 2 C 0.02 1.15 5.43 84.65 0.46 1.61 16 3 Si 0.95 40.84 29.54 68.60 2.03 42.86 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.50 -24.48 8.59 25.60 0.22 -24.26 16 8 H 0.07 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 10 C 0.18 7.98 5.50 86.38 0.48 8.46 16 11 N -0.69 -24.31 5.48 -463.05 -2.54 -26.85 16 12 C 0.50 17.81 7.91 87.66 0.69 18.50 16 13 O -0.59 -27.33 16.50 15.99 0.26 -27.07 16 14 C 0.05 1.18 5.33 71.24 0.38 1.56 16 15 O -0.30 -9.13 9.54 -77.60 -0.74 -9.87 16 16 C 0.11 2.62 6.61 21.35 0.14 2.76 16 17 C -0.20 -2.95 9.16 21.28 0.19 -2.75 16 18 C -0.15 -1.62 11.22 66.73 0.75 -0.87 16 19 S 0.19 2.90 23.34 -56.49 -1.32 1.58 16 20 C -0.24 -5.80 7.10 66.79 0.47 -5.32 16 21 Cl -0.03 -0.74 29.12 -2.72 -0.08 -0.82 16 22 C -0.17 -6.60 9.96 30.62 0.30 -6.29 16 23 C -0.16 -7.06 9.14 30.62 0.28 -6.78 16 24 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.68 8.09 -2.38 -0.02 1.66 16 27 H 0.42 12.15 8.33 -92.71 -0.77 11.38 16 28 H 0.13 2.04 7.83 -2.39 -0.02 2.02 16 29 H 0.12 2.16 7.86 -2.39 -0.02 2.15 16 30 H 0.18 1.60 6.91 -2.91 -0.02 1.58 16 31 H 0.22 0.50 8.06 -2.91 -0.02 0.47 16 32 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 Total: -1.00 -70.46 338.84 2.54 -67.93 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.36 Total: 15.94 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.29 Total: -13.29 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.27 Total: -77.27 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.48 Total: -36.94 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.32 Total: 1.58 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.46 2.54 -67.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341658191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.244 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds