Wall clock time and date at job start Fri Apr 10 2020 23:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47396 * 270.00363 * 3 2 1 5 5 H 1.48505 * 109.46927 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99999 * 3 2 1 7 7 C 1.37871 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46699 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99687 * 180.02562 * 11 10 9 13 13 O 1.21285 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99912 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47528 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47528 * 179.97438 * 15 14 12 17 17 C 1.38249 * 119.99590 * 265.25203 * 16 15 14 18 18 C 1.38191 * 120.03041 * 180.29819 * 17 16 15 19 19 C 1.38386 * 120.00945 * 359.72592 * 18 17 16 20 20 Cl 1.73606 * 120.00614 * 180.02562 * 19 18 17 21 21 C 1.38306 * 119.99041 * 0.02562 * 19 18 17 22 22 C 1.38337 * 119.99277 * 84.99886 * 16 15 14 23 23 Cl 1.73599 * 120.00976 * 359.97438 * 22 16 15 24 24 H 0.96998 * 119.99809 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47286 * 59.99894 * 9 7 2 26 26 H 1.08995 * 109.46976 * 299.99511 * 9 7 2 27 27 H 1.08998 * 109.46951 * 60.00036 * 10 9 7 28 28 H 1.08995 * 109.47188 * 299.99728 * 10 9 7 29 29 H 0.96994 * 120.00064 * 0.02562 * 11 10 9 30 30 H 1.09000 * 109.47844 * 59.99975 * 14 12 11 31 31 H 1.09003 * 109.47265 * 299.99408 * 14 12 11 32 32 H 1.08997 * 109.47210 * 59.99324 * 15 14 12 33 33 H 1.09009 * 109.46873 * 300.00146 * 15 14 12 34 34 H 1.08002 * 119.98459 * 0.02562 * 17 16 15 35 35 H 1.07992 * 120.00056 * 179.70138 * 18 17 16 36 36 H 1.08002 * 120.01552 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 6 2.4276 -8.5660 0.0020 16 6 1.6742 -9.8710 0.0026 17 6 1.4148 -10.5187 1.1962 18 6 0.7293 -11.7187 1.1971 19 6 0.2971 -12.2698 0.0036 20 17 -0.5646 -13.7769 0.0049 21 6 0.5518 -11.6198 -1.1904 22 6 1.2376 -10.4181 -1.1906 23 17 1.5570 -9.6012 -2.6886 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.5430 -4.9308 0.0011 30 1 0.8071 -7.4611 -0.8884 31 1 0.8064 -7.4606 0.8916 32 1 3.0543 -8.5082 0.8919 33 1 3.0543 -8.5083 -0.8881 34 1 1.7519 -10.0890 2.1279 35 1 0.5312 -12.2266 2.1293 36 1 0.2143 -12.0494 -2.1220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342632819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:57 Heat of formation + Delta-G solvation = -53.846921 kcal Electronic energy + Delta-G solvation = -20093.785406 eV Core-core repulsion = 16628.452313 eV Total energy + Delta-G solvation = -3465.333093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.14191 -39.15891 -37.17785 -36.64958 -34.98880 -34.05871 -32.84989 -31.36292 -30.37881 -29.16226 -25.53938 -24.06422 -23.40353 -21.66761 -20.91681 -19.94574 -17.78242 -16.91040 -16.62162 -16.32972 -15.65265 -15.31750 -15.16788 -14.56807 -14.44095 -14.28539 -14.04759 -13.83278 -13.17941 -12.80093 -12.72417 -12.39306 -12.23557 -12.19072 -11.95749 -11.41295 -11.38369 -11.21893 -11.14438 -11.05221 -11.01318 -10.65245 -10.34122 -9.82777 -9.49963 -9.38552 -9.22671 -8.94495 -8.55495 -8.36527 -6.10660 -4.13539 0.53390 0.65320 1.45565 1.91840 2.97884 2.99413 3.28527 3.34656 3.38551 3.67117 4.23782 4.36368 4.43665 4.48877 4.71344 4.82828 4.97588 5.04070 5.21898 5.25152 5.26379 5.52777 5.54181 5.58241 5.70334 5.95884 6.04381 6.16022 6.33234 6.33757 6.72631 6.91029 7.50245 7.60230 7.87468 8.00291 8.26390 8.63953 8.92514 9.51378 11.00905 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.002072 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.909723 B =13507.333886 C =13661.932656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.506 3.494 13 O -0.552 6.552 14 C -0.136 4.136 15 C -0.071 4.071 16 C -0.063 4.063 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.031 4.031 20 Cl -0.063 7.063 21 C -0.101 4.101 22 C -0.025 4.025 23 Cl -0.049 7.049 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.398 0.602 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -27.533 0.276 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.291 3.709 13 O -0.430 6.430 14 C -0.176 4.176 15 C -0.109 4.109 16 C -0.064 4.064 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.058 4.058 20 Cl -0.034 7.034 21 C -0.120 4.120 22 C -0.052 4.052 23 Cl -0.020 7.020 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.211 -27.441 0.138 27.468 hybrid contribution -0.275 0.848 -0.187 0.911 sum -1.486 -26.593 -0.049 26.635 Atomic orbital electron populations 1.69955 1.06083 1.26881 1.50382 1.25003 0.94906 0.99433 0.94999 0.86510 0.79835 0.82987 0.78209 1.20554 1.21163 1.19727 1.21054 0.93243 0.90403 1.51329 0.92258 1.19325 0.94206 0.91159 0.97829 1.21719 0.96046 0.81602 1.00750 1.46350 1.10558 1.06630 1.73712 1.20478 0.88235 0.85535 0.76622 1.90677 1.14016 1.87873 1.50479 1.21626 0.99121 0.92243 1.04643 1.20435 0.96663 0.88127 1.05626 1.20001 0.97641 0.97402 0.91356 1.21073 0.97798 0.94213 0.97870 1.21172 0.97896 0.95957 0.97169 1.20745 1.00398 0.90057 0.94619 1.98389 1.75310 1.30761 1.98903 1.20896 0.99103 0.93891 0.98129 1.20720 1.01783 0.94645 0.88023 1.98410 1.94060 1.78256 1.31255 0.92839 0.95963 0.95942 0.92588 0.92597 0.76870 0.88889 0.88849 0.89344 0.89100 0.83796 0.84234 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.52 16 11 N -0.72 -12.20 5.56 -60.29 -0.33 -12.54 16 12 C 0.51 8.05 7.83 -10.99 -0.09 7.97 16 13 O -0.55 -10.82 15.98 5.55 0.09 -10.73 16 14 C -0.14 -1.50 5.68 -27.89 -0.16 -1.66 16 15 C -0.07 -0.74 4.14 -27.89 -0.12 -0.86 16 16 C -0.06 -0.56 5.14 -104.58 -0.54 -1.10 16 17 C -0.09 -0.67 9.68 -39.59 -0.38 -1.05 16 18 C -0.10 -0.72 9.83 -39.54 -0.39 -1.11 16 19 C -0.03 -0.25 6.32 -39.50 -0.25 -0.49 16 20 Cl -0.06 -0.46 28.96 -51.86 -1.50 -1.96 16 21 C -0.10 -0.83 9.62 -39.51 -0.38 -1.21 16 22 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 23 Cl -0.05 -0.48 27.16 -51.86 -1.41 -1.89 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.77 8.47 -40.82 -0.35 5.43 16 30 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.92 8.01 -51.93 -0.42 0.51 16 33 H 0.09 1.08 7.08 -51.92 -0.37 0.71 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -31.23 344.01 -9.84 -41.08 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.46 Total: 0.37 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.12 Total: -10.50 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.40 Total: -37.83 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.91 Total: -3.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.23 -9.84 -41.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.772 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds