Wall clock time and date at job start Fri Apr 10 2020 23:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47396 * 270.00363 * 3 2 1 5 5 H 1.48505 * 109.46927 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99999 * 3 2 1 7 7 C 1.37871 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46699 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99687 * 180.02562 * 11 10 9 13 13 O 1.21285 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99912 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47528 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47528 * 179.97438 * 15 14 12 17 17 C 1.38249 * 119.99590 * 265.25203 * 16 15 14 18 18 C 1.38191 * 120.03041 * 180.29819 * 17 16 15 19 19 C 1.38386 * 120.00945 * 359.72592 * 18 17 16 20 20 Cl 1.73606 * 120.00614 * 180.02562 * 19 18 17 21 21 C 1.38306 * 119.99041 * 0.02562 * 19 18 17 22 22 C 1.38337 * 119.99277 * 84.99886 * 16 15 14 23 23 Cl 1.73599 * 120.00976 * 359.97438 * 22 16 15 24 24 H 0.96998 * 119.99809 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47286 * 59.99894 * 9 7 2 26 26 H 1.08995 * 109.46976 * 299.99511 * 9 7 2 27 27 H 1.08998 * 109.46951 * 60.00036 * 10 9 7 28 28 H 1.08995 * 109.47188 * 299.99728 * 10 9 7 29 29 H 0.96994 * 120.00064 * 0.02562 * 11 10 9 30 30 H 1.09000 * 109.47844 * 59.99975 * 14 12 11 31 31 H 1.09003 * 109.47265 * 299.99408 * 14 12 11 32 32 H 1.08997 * 109.47210 * 59.99324 * 15 14 12 33 33 H 1.09009 * 109.46873 * 300.00146 * 15 14 12 34 34 H 1.08002 * 119.98459 * 0.02562 * 17 16 15 35 35 H 1.07992 * 120.00056 * 179.70138 * 18 17 16 36 36 H 1.08002 * 120.01552 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 6 2.4276 -8.5660 0.0020 16 6 1.6742 -9.8710 0.0026 17 6 1.4148 -10.5187 1.1962 18 6 0.7293 -11.7187 1.1971 19 6 0.2971 -12.2698 0.0036 20 17 -0.5646 -13.7769 0.0049 21 6 0.5518 -11.6198 -1.1904 22 6 1.2376 -10.4181 -1.1906 23 17 1.5570 -9.6012 -2.6886 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.5430 -4.9308 0.0011 30 1 0.8071 -7.4611 -0.8884 31 1 0.8064 -7.4606 0.8916 32 1 3.0543 -8.5082 0.8919 33 1 3.0543 -8.5083 -0.8881 34 1 1.7519 -10.0890 2.1279 35 1 0.5312 -12.2266 2.1293 36 1 0.2143 -12.0494 -2.1220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342632819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:55 Heat of formation + Delta-G solvation = -71.213825 kcal Electronic energy + Delta-G solvation = -20094.538492 eV Core-core repulsion = 16628.452313 eV Total energy + Delta-G solvation = -3466.086179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96747 -40.31763 -37.81212 -37.31645 -36.62558 -34.94008 -34.79907 -31.98495 -31.80765 -30.38148 -27.06600 -25.38834 -23.99719 -22.94538 -22.25043 -21.22771 -18.65487 -18.37339 -17.89852 -17.35386 -16.68403 -16.53721 -16.46501 -16.26757 -15.28322 -15.22380 -15.04214 -14.73022 -14.41231 -14.22132 -14.01483 -13.49131 -13.22055 -13.11089 -12.97458 -12.87910 -12.68939 -12.52043 -12.22807 -12.08050 -11.96705 -11.88543 -11.80545 -11.65887 -11.45902 -10.81626 -10.60571 -9.98863 -9.98120 -9.62490 -8.24343 -6.34707 -0.09375 0.06328 0.83250 1.27808 1.41707 1.41962 1.53500 1.70459 2.24935 2.39693 2.51517 3.10327 3.57662 3.64870 3.91679 3.93434 4.07446 4.21133 4.28309 4.33775 4.50573 4.53250 4.67524 4.70278 4.81287 4.86812 4.96297 5.10495 5.15046 5.32301 5.34809 5.51036 5.56381 5.58923 5.79359 6.16580 6.66778 6.78774 7.32596 7.34623 8.87380 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.002072 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.909723 B =13507.333886 C =13661.932656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.720 5.720 12 C 0.506 3.494 13 O -0.590 6.590 14 C -0.124 4.124 15 C -0.066 4.066 16 C -0.070 4.070 17 C -0.086 4.086 18 C -0.099 4.099 19 C -0.036 4.036 20 Cl -0.060 7.060 21 C -0.106 4.106 22 C -0.034 4.034 23 Cl -0.063 7.063 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.411 0.589 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -28.426 1.142 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.371 5.371 12 C 0.294 3.706 13 O -0.471 6.471 14 C -0.163 4.163 15 C -0.103 4.103 16 C -0.071 4.071 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.063 4.063 20 Cl -0.031 7.031 21 C -0.125 4.125 22 C -0.061 4.061 23 Cl -0.034 7.034 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.247 0.753 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.470 -28.362 1.002 28.418 hybrid contribution -0.225 1.038 -0.441 1.150 sum -1.695 -27.324 0.561 27.382 Atomic orbital electron populations 1.70056 1.07503 1.27985 1.51028 1.25876 0.95819 1.03105 0.94467 0.85452 0.78647 0.78494 0.78497 1.19833 1.20486 1.19049 1.21479 0.93569 0.92005 1.51465 0.92367 1.19135 0.94243 0.91805 0.96335 1.21194 0.95011 0.82513 0.99673 1.46198 1.11153 1.05697 1.74067 1.21301 0.87959 0.86455 0.74899 1.90661 1.15979 1.88449 1.51977 1.21619 0.98979 0.89201 1.06516 1.20318 0.96453 0.88757 1.04802 1.19893 0.98237 0.97009 0.91984 1.21307 0.97082 0.94051 0.97998 1.21443 0.96900 0.95679 0.97726 1.20885 1.00367 0.90180 0.94850 1.98393 1.75225 1.30540 1.98900 1.20990 0.99040 0.93671 0.98805 1.20792 1.02582 0.95120 0.87585 1.98405 1.94219 1.78568 1.32208 0.92546 0.97441 0.97195 0.93533 0.93841 0.75342 0.87767 0.85937 0.89321 0.90928 0.81693 0.82058 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.11 5.09 29.85 0.15 1.27 16 10 C 0.14 5.96 5.61 86.38 0.48 6.44 16 11 N -0.72 -24.01 5.56 -463.05 -2.57 -26.58 16 12 C 0.51 15.73 7.83 87.66 0.69 16.42 16 13 O -0.59 -23.13 15.98 -3.04 -0.05 -23.18 16 14 C -0.12 -2.51 5.68 29.85 0.17 -2.34 16 15 C -0.07 -1.29 4.14 29.85 0.12 -1.17 16 16 C -0.07 -1.13 5.14 -19.84 -0.10 -1.23 16 17 C -0.09 -1.02 9.68 22.26 0.22 -0.81 16 18 C -0.10 -1.10 9.83 22.29 0.22 -0.88 16 19 C -0.04 -0.49 6.32 22.32 0.14 -0.35 16 20 Cl -0.06 -0.78 28.96 -2.72 -0.08 -0.85 16 21 C -0.11 -1.59 9.62 22.32 0.21 -1.38 16 22 C -0.03 -0.58 6.31 22.32 0.14 -0.44 16 23 Cl -0.06 -1.22 27.16 -2.72 -0.07 -1.30 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.41 11.57 8.47 -92.71 -0.79 10.78 16 30 H 0.10 1.95 7.90 -2.39 -0.02 1.93 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.07 1.71 7.08 -2.38 -0.02 1.69 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -66.95 344.01 3.00 -63.96 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.32 Total: 10.19 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 3.14 Total: -13.93 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.29 Total: -80.44 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.15 Total: -2.15 kcal Total: -66.95 3.00 -63.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.259 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds