Wall clock time and date at job start Fri Apr 10 2020 23:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99474 * 3 2 1 6 6 H 1.48499 * 109.47339 * 59.99974 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46956 * 179.97438 * 15 14 12 17 17 C 1.38228 * 119.98449 * 269.72106 * 16 15 14 18 18 C 1.38363 * 120.01001 * 179.76619 * 17 16 15 19 19 Cl 1.73600 * 120.00336 * 180.27767 * 18 17 16 20 20 C 1.38330 * 119.98715 * 0.53325 * 18 17 16 21 21 C 1.38331 * 119.97574 * 359.71995 * 20 18 17 22 22 Cl 1.73594 * 120.00555 * 179.97438 * 21 20 18 23 23 C 1.38219 * 119.99199 * 89.99280 * 16 15 14 24 24 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 26 26 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 27 27 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 28 28 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 29 29 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 30 30 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 31 31 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 32 32 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 33 33 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 34 34 H 1.07996 * 119.99177 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.00971 * 179.70430 * 20 18 17 36 36 H 1.08000 * 119.98787 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0023 14 6 1.4330 -7.4031 0.0086 15 6 2.4273 -8.5660 0.0085 16 6 1.6738 -9.8711 0.0160 17 6 1.3382 -10.4682 1.2166 18 6 0.6422 -11.6640 1.2241 19 17 0.2145 -12.4101 2.7321 20 6 0.2918 -12.2675 0.0297 21 6 0.6325 -11.6722 -1.1715 22 17 0.1937 -12.4292 -2.6708 23 6 1.3234 -10.4735 -1.1777 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.5427 -4.9308 0.0011 30 1 0.8101 -7.4582 0.9013 31 1 0.8028 -7.4634 -0.8786 32 1 3.0506 -8.5111 -0.8840 33 1 3.0573 -8.5056 0.8959 34 1 1.6157 -9.9992 2.1490 35 1 -0.2473 -13.2033 0.0351 36 1 1.5894 -10.0084 -2.1155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342659849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:59 Heat of formation + Delta-G solvation = -72.588434 kcal Electronic energy + Delta-G solvation = -19869.725187 eV Core-core repulsion = 16403.579401 eV Total energy + Delta-G solvation = -3466.145786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95203 -40.32170 -37.76176 -37.46763 -36.60732 -34.91333 -34.79415 -31.88781 -31.67412 -30.57026 -27.12158 -25.48235 -23.84896 -22.96243 -22.28298 -21.20348 -18.65211 -18.29343 -17.72998 -17.26029 -16.69610 -16.61379 -16.54941 -16.40910 -15.48928 -15.17078 -15.08499 -14.76332 -14.36173 -13.97951 -13.94075 -13.35510 -13.28589 -13.20334 -12.95705 -12.87376 -12.82390 -12.51571 -12.23202 -12.02964 -11.97672 -11.90762 -11.88116 -11.65434 -11.43748 -10.80668 -10.60919 -9.96840 -9.85741 -9.77152 -8.24433 -6.34638 -0.05944 -0.01117 0.79337 1.25114 1.40806 1.42107 1.54896 1.72459 2.24267 2.38535 2.52158 3.10471 3.48636 3.88503 3.95322 3.96139 4.01577 4.11096 4.23394 4.40011 4.47919 4.51894 4.60414 4.71156 4.86429 4.87739 4.98783 5.04804 5.17461 5.33298 5.38287 5.50304 5.53228 5.59541 5.79963 6.16982 6.68618 6.79319 7.34572 7.34922 8.87530 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.002027 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.220665 B =13811.111754 C =14438.121681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.721 5.721 12 C 0.504 3.496 13 O -0.592 6.592 14 C -0.125 4.125 15 C -0.059 4.059 16 C -0.050 4.050 17 C -0.103 4.103 18 C -0.028 4.028 19 Cl -0.058 7.058 20 C -0.110 4.110 21 C -0.028 4.028 22 Cl -0.058 7.058 23 C -0.103 4.103 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.411 0.589 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -28.101 0.051 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.371 5.371 12 C 0.292 3.708 13 O -0.473 6.473 14 C -0.165 4.165 15 C -0.097 4.097 16 C -0.051 4.051 17 C -0.122 4.122 18 C -0.055 4.055 19 Cl -0.029 7.029 20 C -0.129 4.129 21 C -0.055 4.055 22 Cl -0.029 7.029 23 C -0.122 4.122 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.247 0.753 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.408 -28.115 0.053 28.150 hybrid contribution -0.275 0.928 0.000 0.968 sum -1.683 -27.187 0.053 27.239 Atomic orbital electron populations 1.70059 1.07508 1.27929 1.51135 1.25866 0.95797 1.03088 0.94477 0.85410 0.78978 0.78849 0.77898 1.18986 1.20229 1.20241 1.21514 0.93570 0.92032 1.51324 0.92387 1.19141 0.94260 0.91828 0.96343 1.21181 0.94989 0.82583 0.99655 1.46210 1.11181 1.05705 1.74046 1.21400 0.87970 0.86562 0.74867 1.90668 1.16080 1.88483 1.52053 1.21672 0.98956 0.88873 1.06949 1.20276 0.96201 0.88352 1.04892 1.19695 0.97427 0.96241 0.91755 1.21270 0.97472 0.93805 0.99658 1.20787 1.01702 0.95663 0.87320 1.98398 1.91916 1.81840 1.30781 1.21029 1.01228 1.01495 0.89154 1.20785 1.01710 0.95580 0.87396 1.98398 1.91628 1.81347 1.31555 1.21266 0.97455 0.93725 0.99752 0.92547 0.97314 0.97304 0.93717 0.93708 0.75295 0.86481 0.86472 0.90023 0.90036 0.83150 0.82929 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -30.22 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.07 5.09 29.85 0.15 1.23 16 10 C 0.14 5.83 5.61 86.38 0.48 6.32 16 11 N -0.72 -23.07 5.56 -463.06 -2.57 -25.64 16 12 C 0.50 14.78 7.83 87.65 0.69 15.47 16 13 O -0.59 -22.33 15.98 -3.04 -0.05 -22.38 16 14 C -0.12 -2.21 5.68 29.85 0.17 -2.04 16 15 C -0.06 -1.01 4.63 29.85 0.14 -0.88 16 16 C -0.05 -0.74 5.13 -19.87 -0.10 -0.84 16 17 C -0.10 -1.47 9.48 22.30 0.21 -1.26 16 18 C -0.03 -0.40 6.32 22.32 0.14 -0.26 16 19 Cl -0.06 -0.84 28.96 -2.72 -0.08 -0.92 16 20 C -0.11 -1.53 9.62 22.31 0.21 -1.32 16 21 C -0.03 -0.40 6.32 22.32 0.14 -0.26 16 22 Cl -0.06 -0.83 28.96 -2.72 -0.08 -0.91 16 23 C -0.10 -1.47 9.49 22.29 0.21 -1.26 16 24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.41 11.03 8.47 -92.70 -0.79 10.24 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.51 8.05 -2.39 -0.02 1.50 16 33 H 0.08 1.52 8.04 -2.39 -0.02 1.50 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -65.71 346.99 2.99 -62.71 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.32 Total: 9.67 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 3.14 Total: -14.27 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.29 Total: -79.22 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.16 Total: -1.83 kcal Total: -65.71 2.99 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342659849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds