Wall clock time and date at job start Fri Apr 10 2020 23:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76206 * 102.99478 * 2 1 4 4 C 1.38867 * 120.02413 * 0.02562 * 3 2 1 5 5 C 1.38281 * 119.97577 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.99139 * 179.97438 * 5 4 3 7 7 C 1.38907 * 120.01936 * 0.02562 * 5 4 3 8 8 O 1.36054 * 119.97264 * 179.97438 * 7 5 4 9 9 C 1.42900 * 116.99524 * 174.91065 * 8 7 5 10 10 H 1.09004 * 110.78207 * 321.85529 * 9 8 7 11 11 C 1.55157 * 110.71863 * 198.61546 * 9 8 7 12 12 C 1.55132 * 101.48340 * 205.96894 * 11 9 8 13 13 N 1.47428 * 104.72483 * 37.29682 * 12 11 9 14 14 C 1.36934 * 125.64784 * 155.81580 * 13 12 11 15 15 H 1.07998 * 119.99812 * 179.68917 * 14 13 12 16 16 C 1.38811 * 120.00063 * 359.69353 * 14 13 12 17 17 N 1.31617 * 120.00003 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46499 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47159 * 299.99471 * 18 16 14 21 21 H 1.48504 * 109.47116 * 59.99947 * 18 16 14 22 22 C 1.47025 * 108.69960 * 335.54991 * 13 12 11 23 23 C 1.38641 * 120.04720 * 0.22779 * 7 5 4 24 24 C 1.38302 * 120.02216 * 359.49209 * 23 7 5 25 25 F 1.35095 * 120.00911 * 180.22710 * 24 23 7 26 26 H 1.08996 * 109.47101 * 60.00480 * 1 2 3 27 27 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47364 * 299.99839 * 1 2 3 29 29 H 1.07995 * 120.01323 * 359.95188 * 4 3 2 30 30 H 1.08998 * 111.00295 * 324.20645 * 11 9 8 31 31 H 1.09000 * 111.00643 * 88.02128 * 11 9 8 32 32 H 1.08995 * 110.49945 * 278.44613 * 12 11 9 33 33 H 1.09008 * 110.34066 * 156.05630 * 12 11 9 34 34 H 0.96996 * 119.99592 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.87822 * 120.70570 * 22 13 12 36 36 H 1.09000 * 109.88090 * 241.71549 * 22 13 12 37 37 H 1.07998 * 119.98698 * 179.72602 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1949 2.6643 0.0005 5 6 1.5070 4.0115 0.0011 6 9 0.5195 4.9334 0.0011 7 6 2.8356 4.4170 0.0005 8 8 3.1415 5.7427 0.0005 9 6 4.5232 6.0895 0.1129 10 1 5.0356 5.4185 0.8025 11 6 4.6838 7.5658 0.5624 12 6 6.0784 7.9160 -0.0199 13 7 6.1301 7.2152 -1.3159 14 6 6.9146 7.5658 -2.3820 15 1 6.8837 6.9822 -3.2902 16 6 7.7496 8.6713 -2.2955 17 7 7.7869 9.3828 -1.1888 18 14 8.8203 9.1491 -3.7497 19 1 9.6128 10.3569 -3.4052 20 1 9.7399 8.0298 -4.0763 21 1 7.9591 9.4410 -4.9238 22 6 5.2046 6.0737 -1.2717 23 6 3.8499 3.4720 -0.0053 24 6 3.5399 2.1241 0.0000 25 9 4.5285 1.2034 -0.0011 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1620 2.3492 0.0002 30 1 3.9062 8.1935 0.1273 31 1 4.6844 7.6454 1.6495 32 1 6.8685 7.5550 0.6385 33 1 6.1683 8.9924 -0.1669 34 1 8.3702 10.1555 -1.1285 35 1 4.4538 6.1747 -2.0555 36 1 5.7567 5.1434 -1.4052 37 1 4.8825 3.7884 -0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234927217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:09 Heat of formation + Delta-G solvation = -65.505544 kcal Electronic energy + Delta-G solvation = -23733.116680 eV Core-core repulsion = 19853.358152 eV Total energy + Delta-G solvation = -3879.758528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.11959 -48.93286 -40.20167 -37.96090 -36.23734 -32.43962 -31.30553 -30.07868 -29.30248 -29.10701 -27.50654 -24.80666 -23.46091 -22.94375 -20.46764 -20.38434 -18.85196 -18.06466 -17.65249 -16.92326 -16.83697 -16.26695 -15.85330 -15.52004 -15.06676 -14.90479 -14.64392 -14.53051 -14.25676 -14.08965 -13.79137 -13.64881 -13.19269 -13.08769 -12.59415 -12.30656 -12.13515 -11.88747 -11.76635 -11.54687 -11.07195 -10.83623 -10.71766 -10.62473 -10.49847 -10.18396 -9.93564 -9.69585 -9.33540 -8.98440 -8.74367 -7.52054 -6.96588 -5.74463 -3.17492 0.66537 0.71835 1.09854 1.98121 3.01307 3.04057 3.37361 3.41464 3.42825 3.84557 4.00047 4.30448 4.41922 4.64914 4.65758 4.67787 4.94831 5.04496 5.13156 5.19342 5.26122 5.40608 5.43865 5.52566 5.58914 5.68510 5.77273 6.09613 6.22310 6.31663 6.38735 6.46124 6.55000 7.31118 7.35548 7.52125 7.73096 8.24300 9.11548 9.71631 10.33724 11.29787 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003114 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.159825 B = 8990.329294 C = 9639.564416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.088 6.088 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.074 3.926 6 F -0.125 7.125 7 C 0.140 3.860 8 O -0.287 6.287 9 C 0.064 3.936 10 H 0.081 0.919 11 C -0.133 4.133 12 C 0.152 3.848 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.918 3.082 19 H -0.289 1.289 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.116 3.884 23 C -0.202 4.202 24 C 0.154 3.846 25 F -0.121 7.121 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.018 0.982 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 -15.886 5.483 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.153 5.847 3 C -0.260 4.260 4 C -0.130 4.130 5 C 0.052 3.948 6 F -0.103 7.103 7 C 0.090 3.910 8 O -0.199 6.199 9 C 0.008 3.992 10 H 0.099 0.901 11 C -0.172 4.172 12 C 0.027 3.973 13 N -0.327 5.327 14 C -0.355 4.355 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.010 4.010 23 C -0.223 4.223 24 C 0.128 3.872 25 F -0.099 7.099 26 H 0.105 0.895 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.134 0.866 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.905 -16.588 5.407 22.310 hybrid contribution -0.054 1.181 -0.723 1.386 sum -13.959 -15.407 4.684 21.311 Atomic orbital electron populations 1.23753 0.94899 1.07415 1.05926 1.85680 1.06033 1.00184 1.92786 1.21335 0.94116 0.98564 1.11967 1.20716 0.99584 0.89873 1.02788 1.16710 0.82651 0.86017 1.09401 1.91527 1.59632 1.64995 1.94183 1.18771 0.91520 0.85098 0.95635 1.86315 1.29460 1.17894 1.86205 1.23885 0.77621 0.98941 0.98757 0.90074 1.23262 1.02052 0.91693 1.00191 1.22091 0.88405 1.01963 0.84833 1.44359 1.46991 1.28433 1.12930 1.19037 1.15605 1.08904 0.91920 0.90342 1.24802 0.99964 0.97900 0.97740 1.69723 1.41827 1.20095 1.25480 0.86100 0.79987 0.77732 0.81370 1.21454 1.21087 1.21027 1.21754 0.93266 0.92352 0.93636 1.21203 1.01354 0.90648 1.09082 1.16699 0.83172 0.85833 1.01450 1.91546 1.60000 1.65009 1.93348 0.89467 0.87058 0.89500 0.83236 0.90517 0.91230 0.96356 0.86597 0.93449 0.94501 0.95435 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.15 101.05 0.92 0.07 16 2 S -0.09 -0.85 22.16 -107.50 -2.38 -3.23 16 3 C -0.15 -1.71 6.11 -39.04 -0.24 -1.95 16 4 C -0.11 -1.15 9.33 -39.33 -0.37 -1.51 16 5 C 0.07 0.99 7.30 -39.32 -0.29 0.70 16 6 F -0.12 -1.78 17.11 2.25 0.04 -1.74 16 7 C 0.14 2.08 6.63 -39.19 -0.26 1.82 16 8 O -0.29 -4.87 9.74 -19.91 -0.19 -5.06 16 9 C 0.06 1.12 2.76 -24.90 -0.07 1.05 16 10 H 0.08 1.28 6.59 -51.93 -0.34 0.94 16 11 C -0.13 -2.49 6.82 -24.46 -0.17 -2.66 16 12 C 0.15 3.56 5.91 -2.41 -0.01 3.55 16 13 N -0.60 -15.17 3.39 -169.92 -0.58 -15.74 16 14 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -26.31 10.08 55.49 0.56 -25.75 16 18 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.12 2.42 6.51 -3.06 -0.02 2.40 16 23 C -0.20 -2.80 8.75 -39.41 -0.34 -3.15 16 24 C 0.15 2.03 7.27 -39.25 -0.29 1.75 16 25 F -0.12 -1.66 16.75 2.25 0.04 -1.62 16 26 H 0.09 0.44 7.75 -51.93 -0.40 0.04 16 27 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.09 0.42 7.74 -51.93 -0.40 0.02 16 29 H 0.15 1.19 5.87 -52.49 -0.31 0.89 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.12 3.06 5.86 -51.92 -0.30 2.75 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 37 H 0.16 2.23 5.31 -52.49 -0.28 1.95 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -29.74 325.72 -8.09 -37.83 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.08 Total: -1.70 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.38 Total: -4.66 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.02 Total: -41.49 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.19 Total: -5.06 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.38 Total: -3.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.74 -8.09 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234927217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.680 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds