Wall clock time and date at job start Fri Apr 10 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76197 * 102.99953 * 2 1 4 4 C 1.38866 * 120.02340 * 0.02562 * 3 2 1 5 5 C 1.38279 * 119.97765 * 180.02562 * 4 3 2 6 6 F 1.35096 * 119.99432 * 179.97438 * 5 4 3 7 7 C 1.38901 * 120.01807 * 359.96441 * 5 4 3 8 8 O 1.36055 * 119.97350 * 180.02562 * 7 5 4 9 9 C 1.42905 * 116.99714 * 186.23753 * 8 7 5 10 10 C 1.53932 * 113.73186 * 255.83580 * 9 8 7 11 11 N 1.48190 * 86.10356 * 221.95768 * 10 9 8 12 12 C 1.46897 * 111.07094 * 137.52081 * 11 10 9 13 13 C 1.50698 * 109.47074 * 70.56612 * 12 11 10 14 14 H 1.07997 * 120.00247 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99898 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99816 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47005 * 60.00404 * 17 15 13 19 19 H 1.48494 * 109.46904 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47257 * 300.00373 * 17 15 13 21 21 C 1.47962 * 90.79749 * 24.59970 * 11 10 9 22 22 C 1.38637 * 120.05017 * 0.02946 * 7 5 4 23 23 C 1.38305 * 120.01943 * 359.72174 * 22 7 5 24 24 F 1.35103 * 120.00810 * 180.29235 * 23 22 7 25 25 H 1.08998 * 109.47499 * 60.00078 * 1 2 3 26 26 H 1.08994 * 109.47223 * 299.99340 * 1 2 3 27 27 H 1.09003 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.01264 * 359.97000 * 4 3 2 29 29 H 1.08995 * 112.93894 * 27.40396 * 9 8 7 30 30 H 1.08999 * 113.76069 * 336.24062 * 10 9 8 31 31 H 1.09003 * 113.76186 * 107.60261 * 10 9 8 32 32 H 1.09000 * 109.47258 * 190.56774 * 12 11 10 33 33 H 1.09001 * 109.46915 * 310.56798 * 12 11 10 34 34 H 0.96998 * 120.00126 * 179.97438 * 16 15 13 35 35 H 1.08997 * 113.76177 * 221.08146 * 21 11 10 36 36 H 1.09001 * 113.75596 * 89.71810 * 21 11 10 37 37 H 1.07994 * 119.98781 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6643 0.0005 5 6 1.5072 4.0114 0.0000 6 9 0.5198 4.9334 0.0000 7 6 2.8357 4.4169 -0.0003 8 8 3.1418 5.7425 -0.0003 9 6 4.5210 6.0899 -0.1390 10 6 5.1815 6.5414 1.1761 11 7 5.8351 7.5973 0.3675 12 6 5.8198 8.8867 1.0711 13 6 6.7670 8.8313 2.2419 14 1 7.3249 7.9287 2.4429 15 6 6.9222 9.9334 3.0558 16 7 6.2433 11.0327 2.8107 17 14 8.0969 9.8650 4.5066 18 1 9.4707 9.5834 4.0183 19 1 8.0813 11.1684 5.2179 20 1 7.6720 8.7886 5.4373 21 6 4.7507 7.5283 -0.6368 22 6 3.8500 3.4718 -0.0007 23 6 3.5399 2.1240 0.0050 24 9 4.5286 1.2032 0.0106 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.1621 2.3492 0.0005 29 1 5.0952 5.3403 -0.6836 30 1 4.4758 6.9258 1.9125 31 1 5.8764 5.8116 1.5917 32 1 6.1319 9.6769 0.3883 33 1 4.8112 9.0933 1.4292 34 1 6.3522 11.8079 3.3835 35 1 5.1019 7.5858 -1.6670 36 1 3.9188 8.2021 -0.4317 37 1 4.8826 3.7882 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234927677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:13 Heat of formation + Delta-G solvation = -56.979010 kcal Electronic energy + Delta-G solvation = -23266.495080 eV Core-core repulsion = 19387.106290 eV Total energy + Delta-G solvation = -3879.388790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.21662 -49.00972 -40.50124 -38.79963 -36.86491 -32.93205 -31.39721 -30.26634 -29.26259 -29.07777 -25.94646 -25.38685 -23.75500 -23.04163 -21.55933 -19.61069 -19.08157 -18.19691 -17.62740 -16.96860 -16.51065 -16.33177 -15.91517 -15.63861 -15.44179 -14.95504 -14.76792 -14.53775 -14.45291 -14.32983 -14.14502 -13.73091 -13.23727 -13.20234 -12.91114 -12.30625 -12.26601 -12.12007 -11.98643 -11.80990 -11.43559 -10.96674 -10.77485 -10.74674 -10.50271 -10.37283 -9.81794 -9.42746 -9.26498 -9.06525 -8.56340 -7.99338 -7.60087 -6.10841 -4.13611 0.56832 0.61936 1.02786 1.91229 2.86920 2.94705 3.29538 3.33678 3.36534 3.74603 3.90618 4.18545 4.35947 4.53113 4.58147 4.60486 4.61026 4.66153 4.85677 4.98016 5.08407 5.21204 5.25331 5.40674 5.51206 5.58389 5.71538 5.91058 5.96927 6.13571 6.24603 6.29642 6.47854 7.09376 7.17713 7.52289 7.75925 7.98893 8.30421 8.92731 9.51207 11.00309 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.002780 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.733710 B =10068.928976 C =10557.380329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.086 6.086 3 C -0.145 4.145 4 C -0.105 4.105 5 C 0.076 3.924 6 F -0.124 7.124 7 C 0.138 3.862 8 O -0.288 6.288 9 C 0.036 3.964 10 C 0.007 3.993 11 N -0.472 5.472 12 C 0.163 3.837 13 C -0.515 4.515 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.010 3.990 22 C -0.203 4.203 23 C 0.153 3.847 24 F -0.121 7.121 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.151 0.849 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.003 0.997 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -20.870 -7.588 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.155 5.845 3 C -0.258 4.258 4 C -0.129 4.129 5 C 0.054 3.946 6 F -0.102 7.102 7 C 0.088 3.912 8 O -0.199 6.199 9 C -0.020 4.020 10 C -0.122 4.122 11 N -0.197 5.197 12 C 0.037 3.963 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.119 4.119 22 C -0.223 4.223 23 C 0.128 3.872 24 F -0.099 7.099 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.164 -21.597 -7.696 25.501 hybrid contribution -0.839 1.432 1.147 2.017 sum -12.003 -20.165 -6.549 24.364 Atomic orbital electron populations 1.23762 0.94806 1.07492 1.05971 1.85693 1.06136 1.00034 1.92663 1.21362 0.94138 0.98668 1.11675 1.20744 0.99671 0.89886 1.02642 1.16741 0.82729 0.86049 1.09089 1.91538 1.59626 1.64947 1.94126 1.18750 0.91541 0.85004 0.95895 1.86370 1.29634 1.18122 1.85818 1.25205 0.78387 0.98148 1.00226 1.24308 0.96859 0.96392 0.94603 1.68667 1.33674 1.08789 1.08571 1.20229 0.96636 0.85531 0.93868 1.21020 1.24558 0.99222 1.10540 0.91975 1.24991 0.96147 0.95273 0.98035 1.69936 1.41436 1.03064 1.39082 0.86525 0.81372 0.77189 0.82157 1.20067 1.21237 1.20187 1.24172 0.95567 0.92448 0.99687 1.21103 1.01215 0.90618 1.09404 1.16685 0.83186 0.85822 1.01521 1.91551 1.59964 1.65020 1.93356 0.89464 0.89423 0.86999 0.83175 0.87624 0.90112 0.89559 0.94581 0.97967 0.92692 0.89057 0.90485 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.15 101.05 0.92 0.16 16 2 S -0.09 -0.77 22.16 -107.50 -2.38 -3.15 16 3 C -0.15 -1.54 6.11 -39.05 -0.24 -1.78 16 4 C -0.10 -1.05 9.33 -39.33 -0.37 -1.42 16 5 C 0.08 0.94 7.30 -39.32 -0.29 0.65 16 6 F -0.12 -1.68 17.11 2.25 0.04 -1.64 16 7 C 0.14 1.85 6.68 -39.19 -0.26 1.59 16 8 O -0.29 -4.42 10.02 -19.91 -0.20 -4.62 16 9 C 0.04 0.55 3.77 -25.80 -0.10 0.45 16 10 C 0.01 0.13 7.32 -2.63 -0.02 0.12 16 11 N -0.47 -9.86 6.25 -239.75 -1.50 -11.36 16 12 C 0.16 4.18 4.58 -4.98 -0.02 4.16 16 13 C -0.51 -14.34 8.84 -34.44 -0.30 -14.64 16 14 H 0.06 1.71 7.80 -52.49 -0.41 1.30 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.01 0.17 7.81 -2.76 -0.02 0.15 16 22 C -0.20 -2.43 8.98 -39.41 -0.35 -2.79 16 23 C 0.15 1.81 7.27 -39.25 -0.29 1.52 16 24 F -0.12 -1.48 16.75 2.25 0.04 -1.45 16 25 H 0.09 0.37 7.75 -51.93 -0.40 -0.03 16 26 H 0.09 0.39 7.74 -51.93 -0.40 -0.01 16 27 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.15 1.09 5.87 -52.49 -0.31 0.79 16 29 H 0.11 1.36 6.10 -51.93 -0.32 1.04 16 30 H 0.08 1.62 7.79 -51.93 -0.40 1.21 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.00 0.07 7.70 -51.93 -0.40 -0.33 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.37 7.79 -51.93 -0.40 0.97 16 37 H 0.16 1.78 5.96 -52.49 -0.31 1.47 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -30.46 334.42 -8.87 -39.32 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.19 Total: -2.62 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.43 Total: -10.30 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.76 Total: -37.06 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.38 Total: -3.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.46 -8.87 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234927677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.656 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds