Wall clock time and date at job start Fri Apr 10 2020 23:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00097 * 2 1 4 4 C 1.39091 * 119.92892 * 89.99608 * 3 2 1 5 5 F 1.35095 * 119.96331 * 0.02562 * 4 3 2 6 6 C 1.37989 * 120.06607 * 180.02562 * 4 3 2 7 7 C 1.39670 * 119.93304 * 359.97323 * 6 4 3 8 8 C 1.47910 * 120.07008 * 180.02562 * 7 6 4 9 9 C 1.40036 * 119.50485 * 359.97438 * 8 7 6 10 10 C 1.35969 * 121.18843 * 179.97438 * 9 8 7 11 11 C 1.41067 * 120.11608 * 0.02562 * 10 9 8 12 12 C 1.40399 * 120.48655 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99863 * 154.62833 * 12 11 10 14 14 C 1.40272 * 120.00130 * 334.62409 * 12 11 10 15 15 N 1.30656 * 119.99795 * 334.61124 * 14 12 11 16 16 Si 1.86803 * 120.00117 * 154.60380 * 14 12 11 17 17 H 1.48504 * 109.47110 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47140 * 300.00363 * 16 14 12 19 19 H 1.48498 * 109.46886 * 60.00261 * 16 14 12 20 20 C 1.46665 * 119.02787 * 0.26873 * 11 10 9 21 21 C 1.43195 * 120.56122 * 179.73149 * 20 11 10 22 22 N 9.61901 * 114.96230 * 336.77605 * 2 1 3 23 23 C 1.39049 * 118.87214 * 359.42364 * 20 11 10 24 24 C 1.39670 * 119.86026 * 0.27915 * 7 6 4 25 25 C 1.37998 * 119.92895 * 359.47022 * 24 7 6 26 26 F 1.35098 * 119.96713 * 180.25600 * 25 24 7 27 27 H 1.09002 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47385 * 300.00267 * 1 2 3 29 29 H 1.09006 * 109.46845 * 60.00139 * 1 2 3 30 30 H 1.08005 * 120.03211 * 180.02562 * 6 4 3 31 31 H 1.07995 * 119.40783 * 0.02726 * 9 8 7 32 32 H 1.08005 * 119.94043 * 179.97438 * 10 9 8 33 33 H 0.96995 * 119.99839 * 354.17806 * 15 14 12 34 34 H 1.08001 * 120.10536 * 180.26356 * 23 20 11 35 35 H 1.08003 * 120.04140 * 179.72686 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3610 1.8292 1.2054 5 9 2.0537 1.2252 2.3741 6 6 2.9870 3.0590 1.2087 7 6 3.3048 3.6825 0.0000 8 6 3.9763 5.0003 0.0000 9 6 4.2889 5.6151 1.2188 10 6 4.9064 6.8259 1.2587 11 6 5.2444 7.4879 0.0598 12 6 5.8826 8.7381 0.0920 13 1 6.4939 9.0539 -0.7405 14 6 5.7263 9.5769 1.2053 15 7 4.6629 9.4730 1.9573 16 14 7.0385 10.8424 1.6129 17 1 6.6384 11.5965 2.8281 18 1 8.3303 10.1535 1.8614 19 1 7.1900 11.7828 0.4737 20 6 4.9146 6.8536 -1.2208 21 6 5.2376 7.4991 -2.4576 22 7 5.4884 8.0138 -3.4387 23 6 4.2889 5.6119 -1.2136 24 6 2.9824 3.0613 -1.2087 25 6 2.3611 1.8292 -1.2054 26 9 2.0535 1.2253 -2.3741 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.2317 3.5384 2.1451 31 1 4.0357 5.1183 2.1436 32 1 5.1377 7.2819 2.2101 33 1 3.9430 8.8763 1.6994 34 1 4.0408 5.1248 -2.1451 35 1 3.2229 3.5429 -2.1451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243224455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:18 Heat of formation + Delta-G solvation = -70.041351 kcal Electronic energy + Delta-G solvation = -24306.169095 eV Core-core repulsion = 20290.769928 eV Total energy + Delta-G solvation = -4015.399167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.89891 -48.86232 -39.52723 -38.47207 -37.13035 -35.42152 -34.58932 -31.34256 -30.85511 -29.81624 -28.90426 -27.09059 -25.47541 -23.56806 -22.77917 -21.96404 -20.86259 -18.81464 -18.26255 -17.84766 -17.33201 -16.43727 -16.33893 -15.66556 -15.61038 -15.21266 -14.92088 -14.68363 -14.54964 -14.51151 -14.23378 -13.96043 -13.19505 -13.16792 -12.81679 -12.54879 -12.44799 -12.24289 -12.11417 -11.97931 -11.79598 -11.55354 -11.52305 -11.07268 -10.95615 -10.70602 -10.25609 -10.14448 -10.03333 -9.63384 -8.95615 -8.69335 -8.26456 -7.93686 -7.61700 -5.10330 0.78857 1.12299 1.89616 2.28671 2.86107 2.89842 3.07436 3.35133 3.56684 3.62584 3.65083 3.91057 4.03298 4.14706 4.51015 4.84876 4.88713 5.01503 5.13078 5.17546 5.21919 5.22570 5.40420 5.52319 5.66099 5.81612 5.90850 6.04570 6.12650 6.20760 6.35362 6.52080 6.66167 6.72386 6.99684 7.09774 7.15709 7.31401 7.39470 7.45279 7.58288 7.98378 8.09162 8.52502 9.31516 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.003274 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.929498 B = 8549.215064 C = 9718.759364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.127 3.873 5 F -0.131 7.131 6 C -0.183 4.183 7 C 0.083 3.917 8 C -0.228 4.228 9 C -0.031 4.031 10 C -0.215 4.215 11 C 0.125 3.875 12 C -0.442 4.442 13 H 0.091 0.909 14 C 0.033 3.967 15 N -0.742 5.742 16 Si 1.067 2.933 17 H -0.266 1.266 18 H -0.266 1.266 19 H -0.269 1.269 20 C -0.183 4.183 21 C 0.294 3.706 22 N -0.495 5.495 23 C 0.021 3.979 24 C -0.187 4.187 25 C 0.128 3.872 26 F -0.131 7.131 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.145 0.855 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.310 0.690 34 H 0.108 0.892 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -8.755 2.651 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C -0.071 4.071 4 C 0.107 3.893 5 F -0.109 7.109 6 C -0.202 4.202 7 C 0.082 3.918 8 C -0.230 4.230 9 C -0.050 4.050 10 C -0.234 4.234 11 C 0.119 3.881 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.196 4.196 15 N -0.361 5.361 16 Si 0.887 3.113 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.193 1.193 20 C -0.189 4.189 21 C -0.016 4.016 22 N -0.174 5.174 23 C 0.000 4.000 24 C -0.205 4.205 25 C 0.108 3.892 26 F -0.109 7.109 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.868 -7.028 2.277 8.339 hybrid contribution -0.938 -1.563 -0.737 1.966 sum -4.805 -8.591 1.540 9.963 Atomic orbital electron populations 1.23081 0.79529 1.03190 1.00694 1.86129 1.19804 1.23553 1.94122 1.18372 1.07739 0.90543 0.90491 1.17571 0.99747 0.91755 0.80185 1.91484 1.90976 1.83030 1.45436 1.21141 1.04613 0.94336 1.00132 1.18461 0.90440 0.92598 0.90304 1.17507 1.16322 0.95863 0.93293 1.20450 0.94566 0.94265 0.95673 1.20788 1.08383 0.96844 0.97368 1.18536 0.88034 0.92077 0.89444 1.21085 1.21316 0.99900 1.04369 0.89062 1.27538 1.00269 1.00324 0.91426 1.70421 1.03985 1.27433 1.34291 0.83577 0.74387 0.75087 0.78211 1.18981 1.19070 1.19339 1.16659 1.17222 0.98580 0.86391 1.25665 0.91693 0.92049 0.92185 1.81066 1.13341 1.10540 1.12448 1.20713 0.91438 0.91612 0.96242 1.21153 1.04878 0.94396 1.00121 1.17568 0.99739 0.91711 0.80207 1.91485 1.90961 1.83039 1.45455 0.88741 0.93491 0.93520 0.83695 0.87806 0.86457 0.87552 0.87376 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.13 101.05 1.12 1.45 16 2 O -0.32 -4.76 10.13 -19.44 -0.20 -4.95 16 3 C -0.03 -0.40 5.74 -38.95 -0.22 -0.62 16 4 C 0.13 1.91 7.30 -39.36 -0.29 1.62 16 5 F -0.13 -1.95 17.10 2.25 0.04 -1.91 16 6 C -0.18 -2.70 9.38 -39.14 -0.37 -3.07 16 7 C 0.08 1.30 5.88 -104.87 -0.62 0.68 16 8 C -0.23 -3.98 5.88 -104.81 -0.62 -4.60 16 9 C -0.03 -0.54 9.30 -39.72 -0.37 -0.91 16 10 C -0.21 -4.25 7.88 -39.32 -0.31 -4.56 16 11 C 0.13 2.68 5.46 -104.61 -0.57 2.10 16 12 C -0.44 -9.66 8.48 -38.00 -0.32 -9.98 16 13 H 0.09 2.04 7.45 -52.48 -0.39 1.65 16 14 C 0.03 0.67 4.95 -17.29 -0.09 0.59 16 15 N -0.74 -15.81 12.30 55.56 0.68 -15.13 16 16 Si 1.07 17.69 30.01 -169.99 -5.10 12.59 16 17 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 18 H -0.27 -4.25 7.11 56.52 0.40 -3.85 16 19 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 20 C -0.18 -3.76 5.93 -104.27 -0.62 -4.38 16 21 C 0.29 6.34 14.30 -22.47 -0.32 6.02 16 22 N -0.50 -11.12 18.54 41.84 0.78 -10.34 16 23 C 0.02 0.38 9.12 -38.83 -0.35 0.03 16 24 C -0.19 -2.79 9.38 -39.14 -0.37 -3.16 16 25 C 0.13 1.94 7.30 -39.36 -0.29 1.65 16 26 F -0.13 -1.99 17.10 2.25 0.04 -1.95 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 1.93 6.12 -52.48 -0.32 1.61 16 31 H 0.10 1.58 6.08 -52.49 -0.32 1.26 16 32 H 0.12 2.34 6.48 -52.48 -0.34 2.00 16 33 H 0.31 6.67 6.68 -40.82 -0.27 6.40 16 34 H 0.11 1.73 6.12 -52.49 -0.32 1.41 16 35 H 0.14 1.97 6.14 -52.48 -0.32 1.65 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -23.45 323.43 -5.83 -29.29 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.35 Total: 4.67 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -4.59 Total: -17.14 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 1.46 Total: -25.47 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.10 Total: 12.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -23.45 -5.83 -29.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243224455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.756 kcal (2) G-P(sol) polarization free energy of solvation -23.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds