Wall clock time and date at job start Fri Apr 10 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 C 1.53002 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99811 * 91.25151 * 5 4 3 7 7 H 1.08005 * 120.00507 * 39.27065 * 6 5 4 8 8 C 1.38819 * 119.99804 * 219.55319 * 6 5 4 9 9 N 1.31612 * 120.00129 * 16.55657 * 8 6 5 10 10 Si 1.86797 * 119.99766 * 196.56099 * 8 6 5 11 11 H 1.48499 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47230 * 119.99840 * 10 8 6 13 13 H 1.48497 * 109.47234 * 239.99779 * 10 8 6 14 14 C 1.46493 * 120.00083 * 271.24485 * 5 4 3 15 15 C 1.50701 * 109.47263 * 276.23282 * 14 5 4 16 16 C 1.38245 * 119.99330 * 98.55316 * 15 14 5 17 17 C 1.38200 * 120.02821 * 179.72788 * 16 15 14 18 18 C 1.50695 * 119.99534 * 180.27657 * 17 16 15 19 19 C 1.38384 * 120.00885 * 0.54085 * 17 16 15 20 20 Cl 1.73597 * 120.00349 * 179.75022 * 19 17 16 21 21 C 1.38309 * 119.98856 * 359.73494 * 19 17 16 22 22 C 1.38342 * 119.99344 * 278.82432 * 15 14 5 23 23 Cl 1.73599 * 120.00678 * 0.02562 * 22 15 14 24 24 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47095 * 300.00687 * 1 2 3 26 26 H 1.09001 * 109.46731 * 59.99990 * 1 2 3 27 27 H 1.08996 * 109.47019 * 239.99569 * 2 1 3 28 28 H 1.09006 * 109.46837 * 119.99518 * 2 1 3 29 29 H 1.08996 * 109.47557 * 59.99899 * 3 2 1 30 30 H 1.09001 * 109.47357 * 299.99627 * 3 2 1 31 31 H 1.08996 * 109.47019 * 59.99569 * 4 3 2 32 32 H 1.08998 * 109.47122 * 299.99372 * 4 3 2 33 33 H 0.96996 * 120.00563 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47294 * 36.23373 * 14 5 4 35 35 H 1.08999 * 109.46995 * 156.23398 * 14 5 4 36 36 H 1.07998 * 119.98358 * 0.02562 * 16 15 14 37 37 H 1.09006 * 109.47046 * 270.26919 * 18 17 16 38 38 H 1.08998 * 109.47113 * 30.26975 * 18 17 16 39 39 H 1.09005 * 109.47057 * 150.27388 * 18 17 16 40 40 H 1.07999 * 120.01582 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3115 3.4609 1.1841 7 1 4.7679 2.9212 2.0007 8 6 3.9760 4.7991 1.3381 9 7 3.1378 5.3684 0.4982 10 14 4.7144 5.7919 2.7375 11 1 5.6198 4.9261 3.5349 12 1 5.4836 6.9343 2.1820 13 1 3.6265 6.3046 3.6086 14 6 4.2760 3.5231 -1.2699 15 6 5.6358 3.1669 -1.8131 16 6 5.7574 2.1945 -2.7882 17 6 7.0034 1.8712 -3.2909 18 6 7.1345 0.8155 -4.3583 19 6 8.1314 2.5129 -2.8104 20 17 9.6972 2.1020 -3.4373 21 6 8.0110 3.4818 -1.8308 22 6 6.7627 3.8090 -1.3319 23 17 6.6106 5.0246 -0.1019 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 0.9287 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 2.9030 6.3033 0.6060 34 1 3.5095 3.2251 -1.9853 35 1 4.2209 4.5992 -1.1056 36 1 4.8777 1.6907 -3.1607 37 1 7.2671 -0.1600 -3.8902 38 1 6.2333 0.8048 -4.9714 39 1 7.9980 1.0379 -4.9853 40 1 8.8910 3.9831 -1.4557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237697896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:50 Heat of formation + Delta-G solvation = 7.345610 kcal Electronic energy + Delta-G solvation = -22301.450091 eV Core-core repulsion = 18974.603599 eV Total energy + Delta-G solvation = -3326.846491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.25023 -36.65101 -36.00865 -35.57290 -34.06162 -32.33120 -31.52369 -30.65509 -27.91140 -26.55130 -25.60663 -23.87548 -22.08922 -21.38229 -20.47579 -19.54917 -16.98113 -16.45421 -15.81274 -14.87503 -14.83426 -14.44212 -14.17060 -13.73607 -13.58407 -13.45779 -13.28034 -13.01272 -12.50955 -12.36865 -12.16958 -12.00027 -11.72918 -11.56787 -11.44674 -11.20770 -10.90223 -10.73369 -10.59462 -10.56330 -10.47876 -10.38980 -10.25950 -10.02017 -9.94057 -9.69022 -9.64547 -8.46339 -8.40470 -7.91452 -6.60412 -5.84127 -3.37513 1.48366 1.54850 2.25323 2.93129 3.34500 3.43015 3.47322 3.88979 4.46004 4.99293 5.04166 5.30463 5.32711 5.43146 5.45535 5.57024 5.65868 5.67982 5.74486 5.82640 5.86650 6.04348 6.07891 6.14424 6.20621 6.35196 6.39180 6.40801 6.43698 6.49225 6.62901 6.66617 6.75671 7.04489 7.08694 7.10670 7.27920 7.57623 7.81405 8.50597 9.14764 9.76051 10.34072 11.19153 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.005938 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.643784 B = 4714.374961 C = 6908.485471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.569 5.569 6 C -0.247 4.247 7 H 0.058 0.942 8 C 0.033 3.967 9 N -0.882 5.882 10 Si 0.869 3.131 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.287 1.287 14 C 0.172 3.828 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.081 4.081 18 C -0.113 4.113 19 C -0.046 4.046 20 Cl -0.082 7.082 21 C -0.109 4.109 22 C -0.016 4.016 23 Cl -0.036 7.036 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.255 0.745 34 H 0.036 0.964 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -7.097 -7.711 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.287 5.287 6 C -0.376 4.376 7 H 0.076 0.924 8 C -0.167 4.167 9 N -0.524 5.524 10 Si 0.698 3.302 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.213 1.213 14 C 0.046 3.954 15 C -0.065 4.065 16 C -0.124 4.124 17 C -0.082 4.082 18 C -0.170 4.170 19 C -0.074 4.074 20 Cl -0.053 7.053 21 C -0.128 4.128 22 C -0.044 4.044 23 Cl -0.006 7.006 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.830 -6.851 -7.610 11.322 hybrid contribution 0.588 0.694 0.843 1.240 sum 5.418 -6.158 -6.767 10.633 Atomic orbital electron populations 1.21758 0.96810 1.00364 1.01673 1.21528 0.95078 0.98664 1.00829 1.22125 0.98934 0.93883 1.02210 1.20932 0.91485 0.87064 0.98209 1.43660 1.73286 1.10275 1.01447 1.18959 1.33556 0.93695 0.91431 0.92434 1.25031 0.96042 0.98751 0.96915 1.69877 1.32413 1.12190 1.37968 0.86685 0.79457 0.80861 0.83208 1.19690 1.21087 1.21349 1.20119 0.86187 1.02463 0.86607 1.21420 0.99421 0.93117 0.92548 1.20842 0.95967 0.98010 0.97606 1.19708 0.91855 0.98129 0.98558 1.20799 1.02821 0.96837 0.96529 1.20375 0.85474 1.01159 1.00351 1.98314 1.27296 1.93224 1.86513 1.20804 0.97047 0.97968 0.97005 1.20714 0.93251 0.95562 0.94843 1.98413 1.97789 1.52946 1.51478 0.93763 0.92945 0.93116 0.93026 0.92751 0.91756 0.93028 0.95076 0.93935 0.93503 0.94612 0.86588 0.85271 0.91085 0.91361 0.91256 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.13 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.96 5.68 -4.04 -0.02 2.94 16 5 N -0.57 -13.05 2.40 -174.61 -0.42 -13.47 16 6 C -0.25 -6.28 8.08 -15.06 -0.12 -6.40 16 7 H 0.06 1.53 7.88 -52.48 -0.41 1.11 16 8 C 0.03 0.86 3.52 -17.43 -0.06 0.80 16 9 N -0.88 -23.70 11.40 55.49 0.63 -23.07 16 10 Si 0.87 20.95 27.98 -169.99 -4.76 16.19 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.17 3.77 4.88 -5.20 -0.03 3.75 16 15 C -0.06 -1.17 5.45 -104.58 -0.57 -1.74 16 16 C -0.10 -1.72 9.32 -39.59 -0.37 -2.09 16 17 C -0.08 -1.22 5.88 -104.58 -0.62 -1.83 16 18 C -0.11 -1.31 9.61 36.00 0.35 -0.96 16 19 C -0.05 -0.72 6.31 -39.50 -0.25 -0.97 16 20 Cl -0.08 -1.09 27.30 -51.86 -1.42 -2.51 16 21 C -0.11 -1.84 9.62 -39.51 -0.38 -2.22 16 22 C -0.02 -0.31 6.31 -39.50 -0.25 -0.56 16 23 Cl -0.04 -0.75 22.72 -51.86 -1.18 -1.93 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.04 0.75 7.99 -51.93 -0.42 0.34 16 35 H 0.12 2.87 4.74 -51.93 -0.25 2.62 16 36 H 0.13 1.89 8.05 -52.49 -0.42 1.46 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 40 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -26.05 350.45 -10.16 -36.22 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.05 Total: -1.24 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.26 Total: -15.47 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.21 Total: -36.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.76 Total: 16.19 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -2.59 Total: -4.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.05 -10.16 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237697896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.564 kcal (2) G-P(sol) polarization free energy of solvation -26.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds