Wall clock time and date at job start Fri Apr 10 2020 23:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46957 * 2 1 4 4 H 1.08990 * 109.47241 * 54.67326 * 3 2 1 5 5 C 1.50705 * 109.47237 * 174.67498 * 3 2 1 6 6 H 1.07996 * 120.00392 * 116.86539 * 5 3 2 7 7 C 1.37887 * 119.99654 * 296.87096 * 5 3 2 8 8 N 1.31509 * 119.99829 * 351.85721 * 7 5 3 9 9 Si 1.86795 * 119.99806 * 171.86028 * 7 5 3 10 10 H 1.48501 * 109.47090 * 269.99910 * 9 7 5 11 11 H 1.48502 * 109.47536 * 29.99633 * 9 7 5 12 12 H 1.48502 * 109.47435 * 149.99872 * 9 7 5 13 13 N 1.46898 * 109.47022 * 294.67210 * 3 2 1 14 14 C 1.46896 * 110.99959 * 142.30569 * 13 3 2 15 15 C 1.53001 * 109.47035 * 294.71872 * 14 13 3 16 16 C 1.52994 * 109.47598 * 54.71951 * 14 13 3 17 17 C 1.50699 * 109.47140 * 174.72514 * 14 13 3 18 18 C 1.38221 * 119.99145 * 359.71747 * 17 14 13 19 19 C 1.38355 * 120.01633 * 179.77202 * 18 17 14 20 20 Cl 1.73601 * 120.00620 * 180.27998 * 19 18 17 21 21 C 1.38329 * 119.98723 * 0.48517 * 19 18 17 22 22 C 1.38329 * 119.97019 * 359.76894 * 21 19 18 23 23 Cl 1.73607 * 120.00238 * 179.97438 * 22 21 19 24 24 C 1.38222 * 119.98791 * 179.97438 * 17 14 13 25 25 H 1.09006 * 109.46753 * 65.08137 * 1 2 3 26 26 H 1.09001 * 109.46590 * 185.07628 * 1 2 3 27 27 H 1.08995 * 109.47649 * 305.08000 * 1 2 3 28 28 H 1.09008 * 109.47504 * 239.99885 * 2 1 3 29 29 H 1.08997 * 109.47250 * 119.99676 * 2 1 3 30 30 H 0.97002 * 120.00626 * 356.24981 * 8 7 5 31 31 H 1.00906 * 111.00365 * 266.25696 * 13 3 2 32 32 H 1.09008 * 109.46776 * 65.28706 * 15 14 13 33 33 H 1.08995 * 109.47514 * 185.28850 * 15 14 13 34 34 H 1.09004 * 109.47168 * 305.29252 * 15 14 13 35 35 H 1.09005 * 109.46877 * 58.88771 * 16 14 13 36 36 H 1.08999 * 109.47481 * 178.88386 * 16 14 13 37 37 H 1.09000 * 109.47136 * 298.88816 * 16 14 13 38 38 H 1.08003 * 119.98815 * 0.02562 * 18 17 14 39 39 H 1.07997 * 120.01060 * 179.79313 * 21 19 18 40 40 H 1.07999 * 119.99199 * 359.97436 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9831 0.8384 5 6 3.5412 1.4447 0.1319 6 1 4.1527 1.8420 -0.6647 7 6 4.1340 0.9391 1.2695 8 7 3.3935 0.6036 2.3032 9 14 5.9889 0.7308 1.3424 10 1 6.3548 -0.6218 0.8506 11 1 6.6365 1.7595 0.4893 12 1 6.4501 0.8890 2.7450 13 7 1.6581 2.0969 -1.2585 14 6 1.2862 3.4996 -1.0308 15 6 0.0212 3.5589 -0.1722 16 6 2.4270 4.2190 -0.3085 17 6 1.0267 4.1717 -2.3544 18 6 1.1620 3.4577 -3.5302 19 6 0.9193 4.0729 -4.7454 20 17 1.0822 3.1739 -6.2215 21 6 0.5509 5.4057 -4.7842 22 6 0.4207 6.1212 -3.6075 23 17 -0.0409 7.7941 -3.6553 24 6 0.6586 5.5035 -2.3926 25 1 -0.3633 0.4330 -0.9321 26 1 -0.3632 -1.0237 0.0909 27 1 -0.3634 0.5906 0.8409 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4367 0.7622 2.2864 31 1 2.3968 2.0251 -1.9422 32 1 0.2354 3.1575 0.8184 33 1 -0.3082 4.5939 -0.0814 34 1 -0.7648 2.9674 -0.6418 35 1 3.3333 4.1597 -0.9113 36 1 2.1591 5.2647 -0.1572 37 1 2.6014 3.7452 0.6575 38 1 1.4532 2.4181 -3.5000 39 1 0.3646 5.8872 -5.7328 40 1 0.5567 6.0620 -1.4739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:50 Heat of formation + Delta-G solvation = -3.061230 kcal Electronic energy + Delta-G solvation = -22468.324555 eV Core-core repulsion = 19141.026789 eV Total energy + Delta-G solvation = -3327.297766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00718 -37.66006 -36.81811 -36.20482 -34.21213 -31.63875 -30.85477 -30.26794 -28.95143 -26.73885 -25.77375 -23.43216 -22.89065 -22.46874 -20.13877 -18.91064 -17.63289 -16.91049 -15.97180 -15.58554 -14.78551 -14.45756 -14.15701 -14.03445 -13.79934 -13.61506 -13.18774 -12.73152 -12.42205 -12.41981 -12.27123 -12.09208 -11.82465 -11.77383 -11.57980 -11.17435 -11.08285 -11.02549 -10.94576 -10.75431 -10.73424 -10.51907 -10.29441 -10.18623 -9.88026 -9.66374 -8.91769 -8.75224 -8.73549 -8.33803 -7.44457 -6.38291 -4.14431 0.98157 1.06086 1.73697 2.21601 3.39851 3.40387 3.43285 3.56226 4.46453 4.54268 4.82609 4.92579 5.05359 5.23149 5.30137 5.35607 5.43594 5.61066 5.67176 5.96495 6.00411 6.06095 6.11850 6.15207 6.23104 6.34417 6.38350 6.43090 6.49677 6.54520 6.65773 6.80968 6.91530 6.98995 7.15228 7.28825 7.55704 7.86262 7.96370 8.37026 8.51826 8.77939 9.56087 10.94915 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.004030 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.626776 B = 6945.742417 C = 7339.960321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.203 3.797 4 H 0.030 0.970 5 C -0.618 4.618 6 H 0.048 0.952 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 1.060 2.940 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.154 3.846 15 C -0.131 4.131 16 C -0.163 4.163 17 C -0.031 4.031 18 C -0.091 4.091 19 C -0.023 4.023 20 Cl -0.065 7.065 21 C -0.117 4.117 22 C -0.024 4.024 23 Cl -0.068 7.068 24 C -0.104 4.104 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.273 0.727 31 H 0.333 0.667 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 9.520 -11.426 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.048 0.952 5 C -0.657 4.657 6 H 0.067 0.933 7 C -0.177 4.177 8 N -0.542 5.542 9 Si 0.889 3.111 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.212 1.212 13 N -0.305 5.305 14 C 0.062 3.938 15 C -0.189 4.189 16 C -0.222 4.222 17 C -0.032 4.032 18 C -0.110 4.110 19 C -0.050 4.050 20 Cl -0.036 7.036 21 C -0.136 4.136 22 C -0.051 4.051 23 Cl -0.040 7.040 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.332 8.800 -10.572 15.143 hybrid contribution -0.275 1.028 -1.039 1.487 sum -6.607 9.828 -11.611 16.585 Atomic orbital electron populations 1.21722 0.98436 0.98741 1.00700 1.21565 0.92714 0.99589 1.00930 1.19307 0.94119 0.90456 0.86636 0.95199 1.22550 0.91896 1.45718 1.05570 0.93333 1.25606 1.06321 0.93498 0.92274 1.70764 1.08379 1.44483 1.30583 0.83664 0.75100 0.76470 0.75823 1.21455 1.21693 1.21209 1.61075 1.45326 1.10508 1.13576 1.19674 0.95385 0.89647 0.89136 1.21892 0.96388 1.00595 0.99997 1.22517 0.97894 0.98707 1.03066 1.19990 0.95415 0.92323 0.95482 1.21233 0.98466 1.01845 0.89413 1.20744 1.04144 0.92167 0.87981 1.98374 1.96274 1.74729 1.34248 1.20766 1.02259 0.92581 0.97990 1.20613 1.04084 0.85969 0.94438 1.98367 1.90827 1.15904 1.98862 1.20984 0.99836 0.94724 0.96733 0.92923 0.95329 0.94424 0.93913 0.91809 0.91600 0.84889 0.91575 0.93189 0.92092 0.92768 0.94218 0.89731 0.82985 0.84399 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.74 37.16 0.36 -2.22 16 2 C -0.11 -2.38 5.29 -26.73 -0.14 -2.52 16 3 C 0.20 4.43 0.86 -68.86 -0.06 4.37 16 4 H 0.03 0.71 4.56 -51.93 -0.24 0.47 16 5 C -0.62 -15.35 6.89 -34.43 -0.24 -15.59 16 6 H 0.05 1.23 7.54 -52.49 -0.40 0.83 16 7 C 0.03 0.76 5.17 -17.82 -0.09 0.66 16 8 N -0.91 -25.25 12.78 55.43 0.71 -24.54 16 9 Si 1.06 23.99 29.91 -169.99 -5.08 18.91 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -12.40 4.69 -95.42 -0.45 -12.84 16 14 C 0.15 2.49 0.78 -132.76 -0.10 2.39 16 15 C -0.13 -2.03 8.24 37.16 0.31 -1.72 16 16 C -0.16 -2.84 7.37 37.15 0.27 -2.57 16 17 C -0.03 -0.45 4.77 -104.63 -0.50 -0.94 16 18 C -0.09 -1.28 8.89 -39.54 -0.35 -1.63 16 19 C -0.02 -0.30 6.32 -39.50 -0.25 -0.55 16 20 Cl -0.07 -0.77 28.96 -51.86 -1.50 -2.27 16 21 C -0.12 -1.38 9.62 -39.51 -0.38 -1.76 16 22 C -0.02 -0.29 6.32 -39.50 -0.25 -0.54 16 23 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.25 16 24 C -0.10 -1.34 8.42 -39.54 -0.33 -1.68 16 25 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.06 1.56 6.16 -51.93 -0.32 1.24 16 30 H 0.27 7.53 6.18 -40.82 -0.25 7.28 16 31 H 0.33 6.27 6.56 -39.29 -0.26 6.01 16 32 H 0.07 1.13 6.45 -51.92 -0.33 0.79 16 33 H 0.05 0.66 7.21 -51.93 -0.37 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.59 7.35 -51.93 -0.38 0.21 16 37 H 0.08 1.74 6.10 -51.93 -0.32 1.42 16 38 H 0.15 2.23 6.27 -52.48 -0.33 1.90 16 39 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.14 1.64 7.06 -52.49 -0.37 1.27 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -25.35 343.41 -9.72 -35.07 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.31 Total: 7.05 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.75 Total: -24.30 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.26 Total: -37.38 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.08 Total: 18.91 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -3.00 Total: -4.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.35 -9.72 -35.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.009 kcal (2) G-P(sol) polarization free energy of solvation -25.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds