Wall clock time and date at job start Fri Apr 10 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47199 * 2 1 4 4 N 1.46494 * 109.47347 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00707 * 275.00069 * 4 3 2 6 6 C 1.50702 * 109.47064 * 275.00197 * 5 4 3 7 7 H 1.07992 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00045 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46837 * 60.00555 * 10 8 6 12 12 H 1.48508 * 109.46719 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47112 * 300.00210 * 10 8 6 14 14 S 1.65608 * 119.99478 * 95.00447 * 4 3 2 15 15 O 1.42098 * 106.40158 * 336.45517 * 14 4 3 16 16 O 1.42101 * 106.39591 * 203.53905 * 14 4 3 17 17 C 1.76201 * 107.21919 * 90.00290 * 14 4 3 18 18 C 1.38216 * 120.01474 * 115.21079 * 17 14 4 19 19 C 1.38220 * 120.02485 * 180.22740 * 18 17 14 20 20 C 1.38270 * 120.05269 * 359.78881 * 19 18 17 21 21 C 1.38176 * 120.02453 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.01526 * 179.97438 * 21 20 19 23 23 C 1.38442 * 120.00963 * 294.99679 * 17 14 4 24 24 F 1.35104 * 120.02527 * 0.02562 * 23 17 14 25 25 H 1.08996 * 109.47478 * 300.00006 * 1 2 3 26 26 H 1.09005 * 109.47316 * 60.00243 * 1 2 3 27 27 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47478 * 239.99994 * 2 1 3 29 29 H 1.09005 * 109.47316 * 119.99757 * 2 1 3 30 30 H 1.09005 * 109.46825 * 59.99857 * 3 2 1 31 31 H 1.08998 * 109.47000 * 300.00417 * 3 2 1 32 32 H 1.09001 * 109.46617 * 35.00183 * 5 4 3 33 33 H 1.08994 * 109.47602 * 154.99999 * 5 4 3 34 34 H 0.97003 * 120.00107 * 180.02562 * 9 8 6 35 35 H 1.07993 * 119.98739 * 359.97438 * 18 17 14 36 36 H 1.08001 * 119.97771 * 179.76753 * 19 18 17 37 37 H 1.08001 * 119.98942 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47195 * 269.98171 * 22 21 20 39 39 H 1.09009 * 109.46899 * 29.98021 * 22 21 20 40 40 H 1.09002 * 109.47524 * 149.97861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2370 1.3322 1.2647 6 6 4.3807 2.6990 1.8830 7 1 3.9676 3.5633 1.3845 8 6 5.0386 2.8458 3.0858 9 7 5.5412 1.7932 3.6932 10 14 5.2173 4.5401 3.8518 11 1 3.8709 5.1123 4.1073 12 1 5.9593 4.4281 5.1333 13 1 5.9641 5.4267 2.9238 14 16 4.3334 1.5675 -1.4279 15 8 3.4521 1.1097 -2.4442 16 8 5.6163 1.0010 -1.1984 17 6 4.5943 3.2835 -1.7312 18 6 5.8779 3.7960 -1.7437 19 6 6.0825 5.1429 -1.9769 20 6 5.0040 5.9783 -2.2023 21 6 3.7202 5.4673 -2.1951 22 6 2.5449 6.3781 -2.4402 23 6 3.5140 4.1180 -1.9614 24 9 2.2592 3.6174 -1.9532 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.6894 0.6809 1.9460 33 1 5.2253 0.9127 1.0769 34 1 6.0038 1.8964 4.5395 35 1 6.7209 3.1446 -1.5671 36 1 7.0855 5.5433 -1.9828 37 1 5.1650 7.0307 -2.3841 38 1 2.1937 6.7815 -1.4906 39 1 2.8494 7.1967 -3.0924 40 1 1.7415 5.8148 -2.9151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200755708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:04 Heat of formation + Delta-G solvation = -122.867517 kcal Electronic energy + Delta-G solvation = -25765.122856 eV Core-core repulsion = 22006.337231 eV Total energy + Delta-G solvation = -3758.785625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.33667 -40.11898 -38.40128 -37.99257 -37.00482 -35.00616 -34.03773 -33.44219 -31.85055 -29.28147 -28.05082 -26.60284 -24.74704 -24.25280 -22.92976 -22.39564 -19.99863 -19.24626 -18.69926 -18.42207 -17.99265 -17.72980 -17.14185 -16.91072 -16.33434 -15.88462 -15.70941 -15.33724 -14.91949 -14.77652 -14.62878 -14.40401 -14.20458 -13.88861 -13.60846 -13.40878 -13.27416 -13.20292 -13.17042 -13.11362 -13.04043 -12.81886 -12.51722 -12.48359 -12.35083 -12.26372 -12.04495 -11.79749 -11.67835 -11.44698 -10.60090 -10.41271 -9.82684 -9.74583 -8.19252 -6.33442 -0.67358 -0.33364 0.04910 1.39743 1.41506 1.49574 1.89021 2.31058 2.40967 2.63732 2.92882 3.11457 3.23784 3.62764 3.82674 3.90287 4.04158 4.13463 4.15232 4.29332 4.35278 4.46328 4.66441 4.73879 4.75234 4.82066 4.87289 4.90423 4.99214 5.11160 5.15867 5.16762 5.21509 5.24865 5.26753 5.42522 5.49011 5.70701 5.75323 5.87261 6.06659 6.76540 7.36276 8.88728 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.008120 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.685179 B = 3447.600652 C = 4812.584681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.982 5.982 5 C 0.260 3.740 6 C -0.546 4.546 7 H 0.061 0.939 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.956 3.044 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.266 1.266 14 S 2.690 3.310 15 O -0.979 6.979 16 O -0.987 6.987 17 C -0.713 4.713 18 C -0.020 4.020 19 C -0.140 4.140 20 C -0.036 4.036 21 C -0.143 4.143 22 C -0.112 4.112 23 C 0.163 3.837 24 F -0.129 7.129 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.144 0.856 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 10.035 -11.225 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C -0.007 4.007 4 N -0.821 5.821 5 C 0.137 3.863 6 C -0.585 4.585 7 H 0.080 0.920 8 C -0.185 4.185 9 N -0.564 5.564 10 Si 0.780 3.220 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.191 1.191 14 S 2.783 3.217 15 O -0.970 6.970 16 O -0.977 6.977 17 C -0.802 4.802 18 C -0.040 4.040 19 C -0.158 4.158 20 C -0.054 4.054 21 C -0.144 4.144 22 C -0.168 4.168 23 C 0.143 3.857 24 F -0.108 7.108 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.191 0.809 37 H 0.203 0.797 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.926 9.256 -11.581 15.623 hybrid contribution 0.158 0.669 0.988 1.204 sum -4.768 9.925 -10.593 15.279 Atomic orbital electron populations 1.21651 0.92844 1.02802 1.02521 1.21976 0.98171 0.96558 1.01725 1.21542 0.77740 0.97934 1.03457 1.57255 1.15118 1.87584 1.22115 1.18825 0.91015 0.96767 0.79740 1.21715 1.36431 0.94062 1.06282 0.92032 1.25768 0.94769 1.00631 0.97329 1.70046 1.37604 1.31216 1.17544 0.85644 0.78697 0.79865 0.77798 1.19198 1.20778 1.19069 1.01623 0.72677 0.74729 0.72705 1.93515 1.66193 1.80146 1.57105 1.93492 1.41822 1.76718 1.85702 1.30845 1.00858 1.26981 1.21511 1.21072 0.93875 0.97979 0.91035 1.21769 1.01986 0.92018 1.00067 1.21761 0.89754 1.02072 0.91782 1.20472 0.99118 0.91473 1.03385 1.20848 0.93869 0.98457 1.03657 1.17177 0.77607 0.92923 0.98021 1.91460 1.38192 1.87777 1.93332 0.91841 0.91906 0.91178 0.92684 0.92304 0.90235 0.89672 0.95327 0.95836 0.92383 0.83868 0.80874 0.79681 0.89888 0.87578 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.14 -4.93 6.26 30.59 0.19 -4.74 16 3 C 0.12 4.51 5.22 86.38 0.45 4.96 16 4 N -0.98 -43.92 2.77 -519.86 -1.44 -45.36 16 5 C 0.26 13.60 5.43 85.63 0.47 14.07 16 6 C -0.55 -29.51 9.38 25.60 0.24 -29.27 16 7 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.01 0.82 5.46 84.65 0.46 1.28 16 9 N -0.92 -53.81 13.29 21.45 0.28 -53.53 16 10 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 14 S 2.69 117.98 5.30 -56.49 -0.30 117.68 16 15 O -0.98 -43.32 16.40 -128.00 -2.10 -45.42 16 16 O -0.99 -48.34 15.52 -128.00 -1.99 -50.33 16 17 C -0.71 -27.25 5.91 22.31 0.13 -27.12 16 18 C -0.02 -0.68 9.55 22.26 0.21 -0.47 16 19 C -0.14 -3.40 10.04 22.27 0.22 -3.17 16 20 C -0.04 -0.75 9.70 22.26 0.22 -0.53 16 21 C -0.14 -3.67 5.89 -19.82 -0.12 -3.79 16 22 C -0.11 -2.01 9.83 71.24 0.70 -1.31 16 23 C 0.16 5.59 7.15 22.38 0.16 5.75 16 24 F -0.13 -4.48 12.96 44.97 0.58 -3.90 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.08 3.00 8.11 -2.38 -0.02 2.99 16 31 H 0.09 3.05 5.07 -2.39 -0.01 3.04 16 32 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 33 H 0.02 1.36 6.91 -2.39 -0.02 1.35 16 34 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.14 4.86 7.33 -2.91 -0.02 4.83 16 36 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.19 8.09 -2.38 -0.02 1.17 16 40 H 0.07 1.28 7.64 -2.39 -0.02 1.26 16 Total: -1.00 -70.74 349.19 2.16 -68.58 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.04 Total: 15.23 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 4.05 Total: -47.25 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -1.15 Total: -98.89 kcal Atomic # 8 Polarization: -91.66 SS G_CDS: -4.09 Total: -95.75 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.58 Total: -3.90 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 117.98 SS G_CDS: -0.30 Total: 117.68 kcal Total: -70.74 2.16 -68.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200755708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.289 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds