Wall clock time and date at job start Fri Apr 10 2020 23:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48503 * 109.47262 * 270.00027 * 3 2 1 5 5 H 1.48493 * 109.47197 * 30.00413 * 3 2 1 6 6 H 1.48505 * 109.47037 * 150.00298 * 3 2 1 7 7 C 1.37874 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47277 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99653 * 270.00117 * 11 10 9 13 13 C 1.50695 * 109.46865 * 269.99572 * 12 11 10 14 14 C 1.38242 * 119.98854 * 269.72454 * 13 12 11 15 15 C 1.38217 * 120.01312 * 179.72423 * 14 13 12 16 16 C 1.38353 * 119.98475 * 0.55919 * 15 14 13 17 17 Cl 1.73594 * 120.01235 * 179.70183 * 16 15 14 18 18 C 1.38351 * 119.97575 * 359.71558 * 16 15 14 19 19 C 1.38218 * 119.98605 * 0.02562 * 18 16 15 20 20 C 1.39666 * 120.00126 * 89.99821 * 11 10 9 21 21 C 1.38912 * 120.07669 * 359.72242 * 20 11 10 22 22 C 1.38103 * 119.93079 * 180.27360 * 21 20 11 23 23 C 1.38290 * 120.06941 * 0.02562 * 22 21 20 24 24 C 1.38284 * 120.15391 * 359.97438 * 23 22 21 25 25 C 1.38105 * 120.07205 * 0.02562 * 24 23 22 26 26 H 0.97003 * 120.00248 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47468 * 60.00184 * 9 7 2 28 28 H 1.08997 * 109.46901 * 299.99550 * 9 7 2 29 29 H 1.09000 * 109.47199 * 59.99703 * 10 9 7 30 30 H 1.08997 * 109.47015 * 299.99594 * 10 9 7 31 31 H 1.09001 * 109.47057 * 30.00153 * 12 11 10 32 32 H 1.09000 * 109.46706 * 149.99584 * 12 11 10 33 33 H 1.08003 * 119.99043 * 0.02562 * 14 13 12 34 34 H 1.07997 * 120.00434 * 180.26980 * 15 14 13 35 35 H 1.07995 * 120.00840 * 179.97438 * 18 16 15 36 36 H 1.07992 * 119.99371 * 179.97438 * 19 18 16 37 37 H 1.08007 * 120.03675 * 0.26037 * 21 20 11 38 38 H 1.07993 * 119.96648 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.92189 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.96759 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.04076 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9309 -0.0024 12 6 1.1471 -5.5661 1.2661 13 6 2.2521 -6.4943 1.6998 14 6 2.2370 -7.8189 1.3044 15 6 3.2533 -8.6693 1.6973 16 6 4.2798 -8.1975 2.4960 17 17 5.5524 -9.2669 2.9962 18 6 4.2914 -6.8732 2.8961 19 6 3.2773 -6.0224 2.4982 20 6 1.1630 -5.5348 -1.2123 21 6 1.5039 -4.9309 -2.4159 22 6 1.1516 -5.5278 -3.6104 23 6 0.4598 -6.7252 -3.6091 24 6 0.1189 -7.3292 -2.4127 25 6 0.4681 -6.7376 -1.2147 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8726 -3.6047 0.8877 30 1 2.8711 -3.6040 -0.8923 31 1 0.9969 -4.7995 2.0263 32 1 0.2258 -6.1339 1.1357 33 1 1.4335 -8.1881 0.6843 34 1 3.2437 -9.7030 1.3846 35 1 5.0921 -6.5044 3.5200 36 1 3.2860 -4.9887 2.8108 37 1 2.0436 -3.9953 -2.4176 38 1 1.4166 -5.0590 -4.5465 39 1 0.1852 -7.1897 -4.5446 40 1 -0.4217 -8.2640 -2.4152 41 1 0.2012 -7.2095 -0.2807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609540048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:05 Heat of formation + Delta-G solvation = 42.767769 kcal Electronic energy + Delta-G solvation = -23054.105903 eV Core-core repulsion = 19731.228281 eV Total energy + Delta-G solvation = -3322.877622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87609 -38.81996 -36.73826 -35.98997 -33.32778 -31.90401 -31.24030 -30.54764 -30.04439 -28.38920 -25.99659 -24.22994 -22.99797 -22.23876 -21.74887 -21.06528 -19.71619 -17.54795 -16.97017 -16.48521 -15.67850 -15.55440 -15.18682 -14.95681 -14.54318 -14.11425 -14.04590 -13.64654 -13.59013 -13.29361 -13.15596 -12.72028 -12.40028 -12.27722 -12.02576 -11.76508 -11.54117 -11.38270 -11.31825 -11.02693 -10.98834 -10.87162 -10.78710 -10.42996 -10.07536 -9.92262 -9.25556 -9.19713 -9.10703 -8.69051 -8.54212 -8.41646 -6.79876 -6.06837 -4.11301 1.01945 1.21895 1.82448 2.00015 2.03029 3.27368 3.33415 3.35213 3.38904 3.86320 4.28762 4.40972 4.64118 4.77746 4.84439 5.10111 5.18029 5.25721 5.29028 5.32998 5.45148 5.55382 5.58799 5.78695 5.82586 5.87481 5.89741 6.00648 6.12451 6.13322 6.18118 6.36945 6.43278 6.51137 6.71598 6.71809 6.77604 6.85031 7.01413 7.25591 7.54227 7.61347 7.74221 7.96370 8.03481 8.31857 8.96080 9.53595 11.03800 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.003940 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.220219 B = 7104.908264 C = 9179.208224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.011 3.989 10 C 0.124 3.876 11 N -0.614 5.614 12 C 0.159 3.841 13 C -0.091 4.091 14 C -0.095 4.095 15 C -0.113 4.113 16 C -0.037 4.037 17 Cl -0.080 7.080 18 C -0.112 4.112 19 C -0.091 4.091 20 C 0.232 3.768 21 C -0.189 4.189 22 C -0.073 4.073 23 C -0.193 4.193 24 C -0.078 4.078 25 C -0.212 4.212 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 -17.839 2.276 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.027 4.027 10 C 0.003 3.997 11 N -0.321 5.321 12 C 0.035 3.965 13 C -0.093 4.093 14 C -0.113 4.113 15 C -0.132 4.132 16 C -0.064 4.064 17 Cl -0.052 7.052 18 C -0.131 4.131 19 C -0.110 4.110 20 C 0.128 3.872 21 C -0.211 4.211 22 C -0.092 4.092 23 C -0.213 4.213 24 C -0.097 4.097 25 C -0.234 4.234 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.486 -17.689 2.504 18.420 hybrid contribution 0.576 0.912 0.040 1.079 sum 5.062 -16.777 2.544 17.708 Atomic orbital electron populations 1.69969 1.06080 1.26714 1.50191 1.24984 0.94797 0.99227 0.95090 0.86604 0.79829 0.83446 0.78190 1.20598 1.21205 1.19839 1.21101 0.92959 0.90800 1.51508 0.92624 1.19448 0.94450 0.90994 0.97855 1.21851 0.94964 0.81901 1.00967 1.46890 1.60660 1.23225 1.01346 1.20288 0.94095 0.95072 0.87028 1.20651 0.97680 0.94613 0.96378 1.21156 0.98385 0.92947 0.98832 1.21010 0.93580 1.00559 0.98037 1.20919 0.92148 0.91725 1.01566 1.98357 1.51093 1.65365 1.90342 1.21044 0.99622 0.91577 1.00828 1.21134 0.93025 0.99886 0.96942 1.17871 0.91919 0.91178 0.86201 1.20867 1.06891 1.02361 0.91002 1.20861 0.96423 0.94769 0.97180 1.20757 1.05289 0.97899 0.97403 1.20742 0.98057 0.98646 0.92210 1.20631 1.07125 0.97546 0.98142 0.92912 0.96050 0.96525 0.92170 0.91804 0.89284 0.90056 0.84970 0.85217 0.85087 0.84780 0.85405 0.86712 0.87247 0.87000 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.01 0.26 5.30 -27.88 -0.15 0.11 16 10 C 0.12 2.40 5.09 -4.04 -0.02 2.38 16 11 N -0.61 -10.30 2.59 -173.12 -0.45 -10.75 16 12 C 0.16 2.21 5.36 -5.19 -0.03 2.18 16 13 C -0.09 -1.15 5.46 -104.62 -0.57 -1.72 16 14 C -0.09 -1.09 9.34 -39.59 -0.37 -1.46 16 15 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 16 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 17 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 18 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 19 C -0.09 -1.12 9.70 -39.59 -0.38 -1.50 16 20 C 0.23 3.89 6.55 -83.79 -0.55 3.34 16 21 C -0.19 -3.27 9.21 -39.38 -0.36 -3.63 16 22 C -0.07 -1.12 10.04 -39.61 -0.40 -1.51 16 23 C -0.19 -2.67 10.04 -39.55 -0.40 -3.07 16 24 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 25 C -0.21 -3.06 8.50 -39.38 -0.33 -3.40 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.06 1.24 6.20 -51.93 -0.32 0.92 16 31 H 0.09 1.26 8.02 -51.93 -0.42 0.84 16 32 H 0.08 1.02 6.14 -51.93 -0.32 0.71 16 33 H 0.13 1.37 5.84 -52.48 -0.31 1.06 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.36 6.15 -52.48 -0.32 2.03 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.44 4.35 -52.49 -0.23 1.21 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -29.41 356.32 -11.52 -40.93 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.26 Total: 2.72 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -5.40 Total: -26.54 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.29 Total: -36.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.41 -11.52 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.701 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds