Wall clock time and date at job start Fri Apr 10 2020 23:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48503 * 109.47262 * 270.00027 * 3 2 1 5 5 H 1.48493 * 109.47197 * 30.00413 * 3 2 1 6 6 H 1.48505 * 109.47037 * 150.00298 * 3 2 1 7 7 C 1.37874 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47277 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99653 * 270.00117 * 11 10 9 13 13 C 1.50695 * 109.46865 * 269.99572 * 12 11 10 14 14 C 1.38242 * 119.98854 * 269.72454 * 13 12 11 15 15 C 1.38217 * 120.01312 * 179.72423 * 14 13 12 16 16 C 1.38353 * 119.98475 * 0.55919 * 15 14 13 17 17 Cl 1.73594 * 120.01235 * 179.70183 * 16 15 14 18 18 C 1.38351 * 119.97575 * 359.71558 * 16 15 14 19 19 C 1.38218 * 119.98605 * 0.02562 * 18 16 15 20 20 C 1.39666 * 120.00126 * 89.99821 * 11 10 9 21 21 C 1.38912 * 120.07669 * 359.72242 * 20 11 10 22 22 C 1.38103 * 119.93079 * 180.27360 * 21 20 11 23 23 C 1.38290 * 120.06941 * 0.02562 * 22 21 20 24 24 C 1.38284 * 120.15391 * 359.97438 * 23 22 21 25 25 C 1.38105 * 120.07205 * 0.02562 * 24 23 22 26 26 H 0.97003 * 120.00248 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47468 * 60.00184 * 9 7 2 28 28 H 1.08997 * 109.46901 * 299.99550 * 9 7 2 29 29 H 1.09000 * 109.47199 * 59.99703 * 10 9 7 30 30 H 1.08997 * 109.47015 * 299.99594 * 10 9 7 31 31 H 1.09001 * 109.47057 * 30.00153 * 12 11 10 32 32 H 1.09000 * 109.46706 * 149.99584 * 12 11 10 33 33 H 1.08003 * 119.99043 * 0.02562 * 14 13 12 34 34 H 1.07997 * 120.00434 * 180.26980 * 15 14 13 35 35 H 1.07995 * 120.00840 * 179.97438 * 18 16 15 36 36 H 1.07992 * 119.99371 * 179.97438 * 19 18 16 37 37 H 1.08007 * 120.03675 * 0.26037 * 21 20 11 38 38 H 1.07993 * 119.96648 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.92189 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.96759 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.04076 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9309 -0.0024 12 6 1.1471 -5.5661 1.2661 13 6 2.2521 -6.4943 1.6998 14 6 2.2370 -7.8189 1.3044 15 6 3.2533 -8.6693 1.6973 16 6 4.2798 -8.1975 2.4960 17 17 5.5524 -9.2669 2.9962 18 6 4.2914 -6.8732 2.8961 19 6 3.2773 -6.0224 2.4982 20 6 1.1630 -5.5348 -1.2123 21 6 1.5039 -4.9309 -2.4159 22 6 1.1516 -5.5278 -3.6104 23 6 0.4598 -6.7252 -3.6091 24 6 0.1189 -7.3292 -2.4127 25 6 0.4681 -6.7376 -1.2147 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8726 -3.6047 0.8877 30 1 2.8711 -3.6040 -0.8923 31 1 0.9969 -4.7995 2.0263 32 1 0.2258 -6.1339 1.1357 33 1 1.4335 -8.1881 0.6843 34 1 3.2437 -9.7030 1.3846 35 1 5.0921 -6.5044 3.5200 36 1 3.2860 -4.9887 2.8108 37 1 2.0436 -3.9953 -2.4176 38 1 1.4166 -5.0590 -4.5465 39 1 0.1852 -7.1897 -4.5446 40 1 -0.4217 -8.2640 -2.4152 41 1 0.2012 -7.2095 -0.2807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609540048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:04 Heat of formation + Delta-G solvation = 30.959257 kcal Electronic energy + Delta-G solvation = -23054.617958 eV Core-core repulsion = 19731.228281 eV Total energy + Delta-G solvation = -3323.389677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94210 -39.86736 -37.71566 -37.16855 -35.24358 -33.19470 -32.19561 -31.81401 -31.39820 -29.68045 -27.47039 -25.75858 -23.99880 -23.44493 -23.08944 -22.28918 -21.01669 -18.76608 -18.46270 -17.94138 -16.74288 -16.61108 -16.55629 -16.31239 -16.08471 -15.33547 -15.15205 -14.71879 -14.61137 -14.44031 -14.31345 -14.15419 -13.92694 -13.80216 -13.38003 -12.98329 -12.85855 -12.72535 -12.52820 -12.41311 -12.28561 -12.12355 -11.91783 -11.82130 -11.79247 -11.49459 -11.25730 -10.60396 -10.54907 -10.00031 -9.70181 -9.61025 -8.24258 -8.04115 -6.32776 0.09632 0.33370 0.66039 0.85684 1.13730 1.40197 1.40791 1.51729 2.23172 2.42479 2.80771 3.12343 3.13060 3.72314 3.82511 3.94568 4.06356 4.10023 4.21075 4.34403 4.36158 4.47827 4.59127 4.62824 4.69477 4.72537 4.76435 4.88344 4.94496 4.98456 5.02997 5.22236 5.24013 5.25579 5.43439 5.50771 5.55333 5.62454 5.72345 5.80117 5.81982 5.86066 6.11291 6.18605 6.50085 6.74512 6.85512 7.37069 8.90713 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.003940 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.220219 B = 7104.908264 C = 9179.208224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.024 3.976 10 C 0.145 3.855 11 N -0.620 5.620 12 C 0.160 3.840 13 C -0.099 4.099 14 C -0.094 4.094 15 C -0.113 4.113 16 C -0.043 4.043 17 Cl -0.072 7.072 18 C -0.116 4.116 19 C -0.102 4.102 20 C 0.209 3.791 21 C -0.221 4.221 22 C -0.083 4.083 23 C -0.192 4.192 24 C -0.074 4.074 25 C -0.210 4.210 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.009 1.009 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -19.735 2.069 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.328 5.328 12 C 0.037 3.963 13 C -0.101 4.101 14 C -0.113 4.113 15 C -0.132 4.132 16 C -0.070 4.070 17 Cl -0.043 7.043 18 C -0.135 4.135 19 C -0.121 4.121 20 C 0.107 3.893 21 C -0.243 4.243 22 C -0.102 4.102 23 C -0.211 4.211 24 C -0.093 4.093 25 C -0.232 4.232 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.062 -19.618 2.297 20.391 hybrid contribution 0.365 1.409 0.061 1.457 sum 5.428 -18.209 2.358 19.147 Atomic orbital electron populations 1.70110 1.07863 1.27698 1.51460 1.25913 0.95627 1.03202 0.94637 0.85494 0.78812 0.78625 0.78409 1.20035 1.20899 1.18458 1.21558 0.93567 0.91979 1.50801 0.91870 1.19246 0.94579 0.92836 0.94721 1.21349 0.93627 0.81749 1.01056 1.46771 1.61000 1.22453 1.02580 1.20359 0.95331 0.95108 0.85532 1.20523 0.97448 0.94977 0.97163 1.21293 0.98915 0.92388 0.98697 1.21252 0.93007 1.01457 0.97435 1.21071 0.92528 0.91865 1.01555 1.98360 1.50729 1.65000 1.90260 1.21191 0.99688 0.91692 1.00885 1.21200 0.93450 1.00086 0.97378 1.18132 0.93066 0.92383 0.85756 1.20876 1.08594 1.02243 0.92614 1.21101 0.96605 0.95591 0.96902 1.21140 1.03949 0.97029 0.99026 1.21202 0.97096 0.99587 0.91399 1.20910 1.06062 0.96499 0.99759 0.92853 0.99650 0.99065 0.91264 0.92311 0.90330 0.88627 0.83591 0.83213 0.83871 0.85032 0.88028 0.85470 0.84419 0.83384 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.26 5.30 29.85 0.16 1.42 16 10 C 0.14 5.86 5.09 86.38 0.44 6.30 16 11 N -0.62 -21.32 2.59 -701.62 -1.82 -23.13 16 12 C 0.16 4.45 5.36 85.63 0.46 4.91 16 13 C -0.10 -2.43 5.46 -19.86 -0.11 -2.54 16 14 C -0.09 -1.99 9.34 22.27 0.21 -1.79 16 15 C -0.11 -2.24 9.83 22.29 0.22 -2.02 16 16 C -0.04 -0.92 6.32 22.32 0.14 -0.78 16 17 Cl -0.07 -1.40 28.96 -2.72 -0.08 -1.48 16 18 C -0.12 -2.54 9.83 22.29 0.22 -2.32 16 19 C -0.10 -2.47 9.70 22.27 0.22 -2.25 16 20 C 0.21 7.06 6.55 38.22 0.25 7.31 16 21 C -0.22 -7.91 9.21 22.40 0.21 -7.71 16 22 C -0.08 -2.50 10.04 22.25 0.22 -2.28 16 23 C -0.19 -4.81 10.04 22.29 0.22 -4.59 16 24 C -0.07 -1.76 10.04 22.25 0.22 -1.53 16 25 C -0.21 -5.67 8.50 22.40 0.19 -5.48 16 26 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 30 H 0.06 2.42 6.20 -2.39 -0.01 2.40 16 31 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 32 H 0.10 2.33 6.14 -2.39 -0.01 2.32 16 33 H 0.15 2.60 5.84 -2.91 -0.02 2.59 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.10 4.06 6.15 -2.91 -0.02 4.04 16 38 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.14 3.02 4.35 -2.91 -0.01 3.01 16 Total: -1.00 -64.90 356.32 5.41 -59.49 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.03 Total: 17.92 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 3.96 Total: -42.37 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.53 Total: -79.25 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -64.90 5.41 -59.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.448 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds