Wall clock time and date at job start Fri Apr 10 2020 23:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30013 * 127.33510 * 2 1 4 4 O 1.20660 * 112.30208 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15147 * 359.71459 * 4 3 2 6 6 C 1.50704 * 126.82636 * 180.31144 * 5 4 3 7 7 F 1.39894 * 109.46996 * 120.16931 * 6 5 4 8 8 F 1.39898 * 109.47148 * 240.17088 * 6 5 4 9 9 C 1.37356 * 106.34498 * 0.45125 * 5 4 3 10 10 C 1.47399 * 128.56657 * 179.85286 * 9 5 4 11 11 O 1.21606 * 119.99968 * 269.67990 * 10 9 5 12 12 N 1.34782 * 119.99637 * 89.68021 * 10 9 5 13 13 C 1.46958 * 120.59542 * 359.72248 * 12 10 9 14 14 C 1.53809 * 108.39950 * 124.76041 * 13 12 10 15 15 N 1.46964 * 108.58052 * 49.63451 * 14 13 12 16 16 C 1.36932 * 120.59231 * 124.62799 * 15 14 13 17 17 H 1.07999 * 119.99983 * 207.36187 * 16 15 14 18 18 C 1.38814 * 120.00476 * 27.36152 * 16 15 14 19 19 N 1.31612 * 120.00313 * 215.24547 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 35.24458 * 18 16 15 21 21 H 1.48497 * 109.47162 * 95.37087 * 20 18 16 22 22 H 1.48504 * 109.47022 * 215.37842 * 20 18 16 23 23 H 1.48504 * 109.46828 * 335.37456 * 20 18 16 24 24 C 1.46966 * 118.81040 * 304.64719 * 15 14 13 25 25 C 1.46964 * 120.59153 * 180.02562 * 12 10 9 26 26 H 1.09000 * 109.47351 * 270.04775 * 1 2 3 27 27 H 1.09002 * 109.46856 * 30.04816 * 1 2 3 28 28 H 1.09004 * 109.47135 * 150.04161 * 1 2 3 29 29 H 1.08994 * 109.47113 * 0.16817 * 6 5 4 30 30 H 1.09004 * 109.60777 * 244.54277 * 13 12 10 31 31 H 1.09004 * 109.60872 * 5.05040 * 13 12 10 32 32 H 1.09008 * 109.73963 * 289.84404 * 14 13 12 33 33 H 1.08998 * 109.53063 * 169.30217 * 14 13 12 34 34 H 0.97003 * 120.00421 * 179.97438 * 19 18 16 35 35 H 1.08992 * 109.61154 * 295.47958 * 24 15 14 36 36 H 1.09002 * 109.74578 * 175.05644 * 24 15 14 37 37 H 1.09010 * 109.61113 * 354.94907 * 25 12 10 38 38 H 1.09001 * 109.61136 * 115.28486 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9711 -1.3247 0.0160 7 9 5.0566 -2.1251 1.1602 8 9 5.0701 -2.1290 -1.1243 9 6 2.3991 -1.1696 0.0007 10 6 2.0400 -2.5992 0.0010 11 8 1.8923 -3.1892 -1.0521 12 7 1.8754 -3.2524 1.1684 13 6 2.0567 -2.5537 2.4485 14 6 0.7761 -2.7283 3.2824 15 7 0.4181 -4.1536 3.2979 16 6 0.2517 -4.8175 4.4840 17 1 0.4276 -5.8817 4.5364 18 6 -0.1430 -4.1226 5.6190 19 7 0.3225 -4.4717 6.7995 20 14 -1.3349 -2.6919 5.4708 21 1 -2.7173 -3.1710 5.7248 22 1 -0.9817 -1.6483 6.4666 23 1 -1.2530 -2.1191 4.1032 24 6 0.2423 -4.8536 2.0178 25 6 1.5179 -4.6778 1.1839 26 1 -0.3634 0.0009 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3633 -0.8904 -0.5132 29 1 5.7834 -0.5979 0.0195 30 1 2.9052 -2.9821 2.9820 31 1 2.2339 -1.4940 2.2649 32 1 -0.0349 -2.1522 2.8368 33 1 0.9552 -2.3850 4.3013 34 1 0.0470 -3.9859 7.5926 35 1 -0.6067 -4.4290 1.4822 36 1 0.0670 -5.9141 2.1990 37 1 1.3392 -5.0213 0.1649 38 1 2.3302 -5.2540 1.6269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610430028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:07 Heat of formation + Delta-G solvation = -25.879884 kcal Electronic energy + Delta-G solvation = -27911.330429 eV Core-core repulsion = 23622.830079 eV Total energy + Delta-G solvation = -4288.500351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.42270 -47.42747 -45.26942 -39.84316 -37.15785 -34.95093 -34.06061 -33.22276 -31.64244 -30.77485 -29.10499 -27.77843 -26.96131 -24.84221 -23.32802 -23.23654 -21.39006 -20.70920 -19.36907 -18.43683 -18.19935 -17.73306 -17.41663 -17.26781 -16.39196 -16.20056 -15.52346 -15.06242 -14.63081 -14.37583 -14.26387 -13.90078 -13.82965 -13.75241 -13.62290 -13.54269 -13.44034 -12.95691 -12.92054 -12.60123 -12.24214 -12.05117 -11.85008 -11.55937 -11.16758 -10.91974 -10.56382 -10.50759 -10.32240 -10.23817 -10.17824 -9.81219 -9.54743 -8.86776 -8.36035 -7.10517 -6.15494 -3.38190 0.70084 1.57525 1.96764 2.36199 3.02464 3.28614 3.41092 3.45819 3.50159 3.63015 3.77000 4.10761 4.32005 4.44474 4.45691 4.63907 4.74814 4.81838 5.15634 5.21450 5.28725 5.38945 5.43305 5.50309 5.68338 5.79143 5.82254 5.95733 5.97734 6.12484 6.41017 6.47755 6.64106 6.73915 7.48135 7.76690 7.80058 8.10652 8.18228 8.79993 9.58742 9.97575 10.98854 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005078 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.931315 B = 5513.119676 C = 5948.040793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.055 3.945 3 N -0.337 5.337 4 O 0.123 5.877 5 C -0.091 4.091 6 C 0.362 3.638 7 F -0.174 7.174 8 F -0.175 7.175 9 C -0.171 4.171 10 C 0.583 3.417 11 O -0.530 6.530 12 N -0.579 5.579 13 C 0.088 3.912 14 C 0.133 3.867 15 N -0.598 5.598 16 C -0.276 4.276 17 H 0.084 0.916 18 C 0.040 3.960 19 N -0.879 5.879 20 Si 0.835 3.165 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.257 1.257 24 C 0.133 3.867 25 C 0.095 3.905 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 9.108 -13.091 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 N -0.039 5.039 4 O 0.055 5.945 5 C -0.156 4.156 6 C 0.307 3.693 7 F -0.155 7.155 8 F -0.156 7.156 9 C -0.178 4.178 10 C 0.368 3.632 11 O -0.407 6.407 12 N -0.310 5.310 13 C -0.036 4.036 14 C 0.007 3.993 15 N -0.322 5.322 16 C -0.403 4.403 17 H 0.102 0.898 18 C -0.162 4.162 19 N -0.519 5.519 20 Si 0.662 3.338 21 H -0.219 1.219 22 H -0.220 1.220 23 H -0.181 1.181 24 C 0.007 3.993 25 C -0.028 4.028 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.162 0.838 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.057 10.027 -13.414 18.173 hybrid contribution -0.881 0.057 0.244 0.916 sum 6.176 10.084 -13.169 17.700 Atomic orbital electron populations 1.20315 0.84393 1.04590 1.04531 1.24864 0.99012 0.85797 1.00905 1.73598 0.88878 1.22944 1.18480 1.84536 1.21755 1.20756 1.67431 1.24923 0.97212 0.85675 1.07779 1.19187 0.92118 0.85346 0.72637 1.93137 1.96624 1.75736 1.49981 1.93128 1.96514 1.75579 1.50426 1.22269 0.92269 0.96497 1.06743 1.16901 0.78348 0.83580 0.84365 1.90812 1.51758 1.67316 1.30854 1.47951 1.66066 1.11672 1.05298 1.22650 1.01657 0.95494 0.83845 1.21815 0.92361 0.86684 0.98480 1.44271 1.79701 1.06197 1.01988 1.18775 1.42492 0.94757 0.84264 0.89844 1.25235 0.98825 0.97306 0.94804 1.70077 1.40584 1.42259 0.98978 0.87627 0.84416 0.83276 0.78454 1.21874 1.22018 1.18130 1.21357 0.93192 0.98016 0.86768 1.22366 0.99519 0.79109 1.01770 0.88987 0.89554 0.89342 0.83819 0.90185 0.91612 0.94838 0.90333 0.92641 0.95429 0.90331 0.89378 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.01 0.38 -0.53 16 2 C 0.06 0.75 7.57 -79.77 -0.60 0.14 16 3 N -0.34 -4.44 12.01 34.78 0.42 -4.02 16 4 O 0.12 1.45 11.06 18.64 0.21 1.66 16 5 C -0.09 -1.12 6.98 -34.63 -0.24 -1.36 16 6 C 0.36 3.60 5.68 36.01 0.20 3.80 16 7 F -0.17 -2.10 17.32 2.25 0.04 -2.06 16 8 F -0.18 -2.16 17.32 2.25 0.04 -2.12 16 9 C -0.17 -2.50 4.17 -102.89 -0.43 -2.93 16 10 C 0.58 9.89 7.52 -12.53 -0.09 9.80 16 11 O -0.53 -10.29 16.51 5.27 0.09 -10.20 16 12 N -0.58 -9.84 2.94 -173.47 -0.51 -10.35 16 13 C 0.09 1.49 6.53 -3.37 -0.02 1.47 16 14 C 0.13 2.68 4.53 -3.37 -0.02 2.67 16 15 N -0.60 -13.24 2.70 -171.74 -0.46 -13.70 16 16 C -0.28 -7.20 9.86 -15.06 -0.15 -7.35 16 17 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 18 C 0.04 1.08 4.85 -17.43 -0.08 1.00 16 19 N -0.88 -25.43 13.97 55.49 0.78 -24.66 16 20 Si 0.84 20.09 26.43 -169.99 -4.49 15.60 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -5.76 4.82 56.52 0.27 -5.49 16 24 C 0.13 2.48 6.67 -3.58 -0.02 2.45 16 25 C 0.10 1.61 6.59 -3.58 -0.02 1.58 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.00 6.30 -51.93 -0.33 0.68 16 32 H 0.03 0.67 6.69 -51.92 -0.35 0.33 16 33 H 0.08 1.70 5.59 -51.93 -0.29 1.41 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 1.41 7.94 -51.93 -0.41 0.99 16 37 H 0.09 1.42 6.99 -51.92 -0.36 1.06 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -31.84 327.62 -4.46 -36.30 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.39 Total: -2.12 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -1.10 Total: 10.75 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.22 Total: -52.73 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.29 Total: -8.55 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.49 Total: 15.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.84 -4.46 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610430028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.419 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds