Wall clock time and date at job start Fri Apr 10 2020 23:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30013 * 127.33510 * 2 1 4 4 O 1.20660 * 112.30208 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15147 * 359.71459 * 4 3 2 6 6 C 1.50704 * 126.82636 * 180.31144 * 5 4 3 7 7 F 1.39894 * 109.46996 * 120.16931 * 6 5 4 8 8 F 1.39898 * 109.47148 * 240.17088 * 6 5 4 9 9 C 1.37356 * 106.34498 * 0.45125 * 5 4 3 10 10 C 1.47399 * 128.56657 * 179.85286 * 9 5 4 11 11 O 1.21606 * 119.99968 * 269.67990 * 10 9 5 12 12 N 1.34782 * 119.99637 * 89.68021 * 10 9 5 13 13 C 1.46958 * 120.59542 * 359.72248 * 12 10 9 14 14 C 1.53809 * 108.39950 * 124.76041 * 13 12 10 15 15 N 1.46964 * 108.58052 * 49.63451 * 14 13 12 16 16 C 1.36932 * 120.59231 * 124.62799 * 15 14 13 17 17 H 1.07999 * 119.99983 * 207.36187 * 16 15 14 18 18 C 1.38814 * 120.00476 * 27.36152 * 16 15 14 19 19 N 1.31612 * 120.00313 * 215.24547 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 35.24458 * 18 16 15 21 21 H 1.48497 * 109.47162 * 95.37087 * 20 18 16 22 22 H 1.48504 * 109.47022 * 215.37842 * 20 18 16 23 23 H 1.48504 * 109.46828 * 335.37456 * 20 18 16 24 24 C 1.46966 * 118.81040 * 304.64719 * 15 14 13 25 25 C 1.46964 * 120.59153 * 180.02562 * 12 10 9 26 26 H 1.09000 * 109.47351 * 270.04775 * 1 2 3 27 27 H 1.09002 * 109.46856 * 30.04816 * 1 2 3 28 28 H 1.09004 * 109.47135 * 150.04161 * 1 2 3 29 29 H 1.08994 * 109.47113 * 0.16817 * 6 5 4 30 30 H 1.09004 * 109.60777 * 244.54277 * 13 12 10 31 31 H 1.09004 * 109.60872 * 5.05040 * 13 12 10 32 32 H 1.09008 * 109.73963 * 289.84404 * 14 13 12 33 33 H 1.08998 * 109.53063 * 169.30217 * 14 13 12 34 34 H 0.97003 * 120.00421 * 179.97438 * 19 18 16 35 35 H 1.08992 * 109.61154 * 295.47958 * 24 15 14 36 36 H 1.09002 * 109.74578 * 175.05644 * 24 15 14 37 37 H 1.09010 * 109.61113 * 354.94907 * 25 12 10 38 38 H 1.09001 * 109.61136 * 115.28486 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9711 -1.3247 0.0160 7 9 5.0566 -2.1251 1.1602 8 9 5.0701 -2.1290 -1.1243 9 6 2.3991 -1.1696 0.0007 10 6 2.0400 -2.5992 0.0010 11 8 1.8923 -3.1892 -1.0521 12 7 1.8754 -3.2524 1.1684 13 6 2.0567 -2.5537 2.4485 14 6 0.7761 -2.7283 3.2824 15 7 0.4181 -4.1536 3.2979 16 6 0.2517 -4.8175 4.4840 17 1 0.4276 -5.8817 4.5364 18 6 -0.1430 -4.1226 5.6190 19 7 0.3225 -4.4717 6.7995 20 14 -1.3349 -2.6919 5.4708 21 1 -2.7173 -3.1710 5.7248 22 1 -0.9817 -1.6483 6.4666 23 1 -1.2530 -2.1191 4.1032 24 6 0.2423 -4.8536 2.0178 25 6 1.5179 -4.6778 1.1839 26 1 -0.3634 0.0009 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3633 -0.8904 -0.5132 29 1 5.7834 -0.5979 0.0195 30 1 2.9052 -2.9821 2.9820 31 1 2.2339 -1.4940 2.2649 32 1 -0.0349 -2.1522 2.8368 33 1 0.9552 -2.3850 4.3013 34 1 0.0470 -3.9859 7.5926 35 1 -0.6067 -4.4290 1.4822 36 1 0.0670 -5.9141 2.1990 37 1 1.3392 -5.0213 0.1649 38 1 2.3302 -5.2540 1.6269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610430028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:06 Heat of formation + Delta-G solvation = -46.280841 kcal Electronic energy + Delta-G solvation = -27912.215081 eV Core-core repulsion = 23622.830079 eV Total energy + Delta-G solvation = -4289.385003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.27333 -48.29561 -46.26465 -41.22106 -38.70932 -36.00966 -35.65156 -34.28571 -33.48598 -32.28130 -30.04165 -29.19329 -28.07300 -26.16531 -24.91346 -24.71564 -22.64832 -21.84359 -20.72220 -19.57846 -19.29191 -18.71839 -18.50193 -18.18385 -17.93964 -17.63735 -16.78874 -16.67674 -16.09772 -16.03087 -15.38515 -15.16048 -15.08741 -14.77035 -14.67423 -14.63027 -14.48022 -14.40353 -14.18900 -14.02268 -13.77235 -13.56501 -12.82158 -12.73871 -12.61605 -12.45527 -12.31788 -12.17673 -11.98076 -11.51707 -11.40666 -11.16745 -11.00881 -10.71621 -10.02551 -8.92701 -8.23002 -5.42455 -0.28803 0.55946 0.98930 1.12387 1.35035 1.47519 1.51854 1.75247 2.44068 2.66969 2.72810 2.88302 2.92742 3.14725 3.33174 3.41675 3.57926 3.65300 3.92613 3.98735 4.02950 4.22715 4.27504 4.31923 4.46510 4.49368 4.55747 4.58145 4.68269 4.81624 4.91709 4.96986 5.12960 5.31471 5.83978 6.08384 6.16601 6.77515 6.80081 6.87583 7.59798 8.01901 8.94882 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005078 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.931315 B = 5513.119676 C = 5948.040793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.053 3.947 3 N -0.346 5.346 4 O 0.139 5.861 5 C -0.071 4.071 6 C 0.356 3.644 7 F -0.187 7.187 8 F -0.190 7.190 9 C -0.209 4.209 10 C 0.592 3.408 11 O -0.558 6.558 12 N -0.582 5.582 13 C 0.103 3.897 14 C 0.130 3.870 15 N -0.610 5.610 16 C -0.263 4.263 17 H 0.054 0.946 18 C -0.011 4.011 19 N -0.928 5.928 20 Si 0.896 3.104 21 H -0.303 1.303 22 H -0.296 1.296 23 H -0.230 1.230 24 C 0.134 3.866 25 C 0.103 3.897 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.263 0.737 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 11.159 -14.630 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 N -0.047 5.047 4 O 0.071 5.929 5 C -0.137 4.137 6 C 0.302 3.698 7 F -0.168 7.168 8 F -0.171 7.171 9 C -0.216 4.216 10 C 0.378 3.622 11 O -0.437 6.437 12 N -0.312 5.312 13 C -0.021 4.021 14 C 0.004 3.996 15 N -0.334 5.334 16 C -0.392 4.392 17 H 0.071 0.929 18 C -0.209 4.209 19 N -0.571 5.571 20 Si 0.723 3.277 21 H -0.232 1.232 22 H -0.223 1.223 23 H -0.154 1.154 24 C 0.008 3.992 25 C -0.020 4.020 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.223 0.777 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.582 12.106 -14.999 20.713 hybrid contribution -0.983 -0.630 0.652 1.337 sum 6.599 11.476 -14.347 19.522 Atomic orbital electron populations 1.20411 0.83198 1.05323 1.04999 1.25145 0.99881 0.85258 1.00511 1.73591 0.89220 1.22917 1.19006 1.84542 1.21304 1.20371 1.66664 1.25359 0.97532 0.85643 1.05141 1.19978 0.92678 0.85699 0.71473 1.93110 1.96608 1.76319 1.50755 1.93099 1.96498 1.76208 1.51315 1.22148 0.93885 0.95541 1.10038 1.17069 0.77222 0.84347 0.83584 1.90792 1.52877 1.68347 1.31699 1.47970 1.66170 1.11629 1.05457 1.22404 0.99574 0.96820 0.83291 1.21836 0.94035 0.85384 0.98330 1.44357 1.80085 1.07097 1.01882 1.18693 1.40949 0.93781 0.85766 0.92876 1.25727 1.00266 1.00390 0.94486 1.70164 1.42506 1.44652 0.99785 0.86657 0.81041 0.80377 0.79584 1.23174 1.22335 1.15356 1.21448 0.94377 0.97942 0.85420 1.22222 0.98512 0.79473 1.01792 0.88539 0.87639 0.89835 0.77745 0.90719 0.89391 0.93950 0.91937 0.92827 0.94572 0.90131 0.88460 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.49 71.24 0.75 -0.89 16 2 C 0.05 1.29 7.57 45.16 0.34 1.64 16 3 N -0.35 -8.13 12.01 -44.78 -0.54 -8.67 16 4 O 0.14 2.82 11.06 76.95 0.85 3.68 16 5 C -0.07 -1.53 6.98 25.48 0.18 -1.36 16 6 C 0.36 5.91 5.68 71.24 0.40 6.31 16 7 F -0.19 -4.04 17.32 44.97 0.78 -3.26 16 8 F -0.19 -4.24 17.32 44.97 0.78 -3.46 16 9 C -0.21 -5.64 4.17 -18.75 -0.08 -5.72 16 10 C 0.59 19.02 7.52 86.65 0.65 19.67 16 11 O -0.56 -20.96 16.51 -4.05 -0.07 -21.03 16 12 N -0.58 -18.76 2.94 -820.98 -2.41 -21.17 16 13 C 0.10 3.31 6.53 86.56 0.57 3.88 16 14 C 0.13 5.01 4.53 86.56 0.39 5.40 16 15 N -0.61 -26.49 2.70 -697.28 -1.88 -28.37 16 16 C -0.26 -13.88 9.86 84.03 0.83 -13.05 16 17 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 18 C -0.01 -0.59 4.85 84.86 0.41 -0.17 16 19 N -0.93 -54.95 13.97 21.65 0.30 -54.65 16 20 Si 0.90 41.62 26.43 68.60 1.81 43.43 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.23 -9.55 4.82 99.48 0.48 -9.07 16 24 C 0.13 4.82 6.67 86.43 0.58 5.40 16 25 C 0.10 3.34 6.59 86.43 0.57 3.91 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.21 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.09 2.46 6.30 -2.39 -0.02 2.44 16 32 H 0.04 1.57 6.69 -2.38 -0.02 1.56 16 33 H 0.06 2.62 5.59 -2.39 -0.01 2.61 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 2.84 7.94 -2.39 -0.02 2.83 16 37 H 0.10 3.01 6.99 -2.38 -0.02 2.99 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -69.00 327.62 6.10 -62.90 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 0.88 Total: 5.58 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.59 Total: 25.02 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.53 Total: -112.86 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.78 Total: -17.35 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 1.56 Total: -6.72 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.81 Total: 43.43 kcal Total: -69.00 6.10 -62.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610430028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds