Wall clock time and date at job start Fri Apr 10 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48506 * 109.46768 * 85.17875 * 3 2 1 5 5 H 1.48503 * 109.47148 * 325.18389 * 3 2 1 6 6 H 1.48494 * 109.47408 * 205.18179 * 3 2 1 7 7 C 1.39945 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00024 * 197.42656 * 7 2 1 9 9 C 1.41392 * 120.00395 * 17.43692 * 7 2 1 10 10 C 1.40715 * 120.24145 * 24.85705 * 9 7 2 11 11 C 1.37625 * 119.74124 * 179.77046 * 10 9 7 12 12 C 1.38632 * 120.24846 * 0.48595 * 11 10 9 13 13 C 1.50704 * 119.75053 * 179.74125 * 12 11 10 14 14 N 1.46903 * 109.47136 * 270.02755 * 13 12 11 15 15 C 1.47013 * 111.00013 * 46.36475 * 14 13 12 16 16 C 1.53091 * 109.25788 * 182.39278 * 15 14 13 17 17 O 1.43016 * 109.25962 * 303.15224 * 16 15 14 18 18 C 1.43011 * 113.73935 * 58.66555 * 17 16 15 19 19 H 1.09006 * 109.54186 * 61.29394 * 18 17 16 20 20 C 1.53002 * 109.50776 * 181.39644 * 18 17 16 21 21 F 1.39902 * 109.47294 * 179.78554 * 20 18 17 22 22 F 1.39903 * 109.47382 * 299.78712 * 20 18 17 23 23 F 1.39902 * 109.46788 * 59.78722 * 20 18 17 24 24 C 1.47013 * 110.99864 * 169.99550 * 14 13 12 25 25 C 1.38633 * 120.50053 * 359.76895 * 12 11 10 26 26 C 1.37611 * 120.25217 * 359.97438 * 25 12 11 27 27 H 0.96991 * 120.00555 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.13332 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.87514 * 180.23760 * 11 10 9 30 30 H 1.09004 * 109.46722 * 30.02425 * 13 12 11 31 31 H 1.08995 * 109.47232 * 150.02202 * 13 12 11 32 32 H 1.09000 * 109.50704 * 302.32417 * 15 14 13 33 33 H 1.09000 * 109.50568 * 62.45424 * 15 14 13 34 34 H 1.08997 * 109.51147 * 183.21179 * 16 15 14 35 35 H 1.08999 * 109.54428 * 63.10489 * 16 15 14 36 36 H 1.09001 * 109.51047 * 297.54556 * 24 14 13 37 37 H 1.09002 * 109.50394 * 57.63026 * 24 14 13 38 38 H 1.08005 * 119.87362 * 179.97438 * 25 12 11 39 39 H 1.08002 * 120.13388 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3878 2.1052 1.3952 5 1 1.4943 2.6212 -0.7994 6 1 3.5869 1.4130 -0.5957 7 6 2.0080 -1.2120 0.0005 8 1 3.0508 -1.2333 0.2807 9 6 1.3498 -2.4085 -0.3658 10 6 0.2192 -2.3679 -1.2026 11 6 -0.4107 -3.5392 -1.5566 12 6 0.0588 -4.7550 -1.0839 13 6 -0.6431 -6.0303 -1.4739 14 7 -1.6939 -6.3309 -0.4924 15 6 -2.4940 -5.1342 -0.1940 16 6 -3.5357 -5.4767 0.8743 17 8 -4.3411 -6.5660 0.4157 18 6 -3.5940 -7.7481 0.1163 19 1 -3.0906 -8.0993 1.0171 20 6 -4.5413 -8.8350 -0.3960 21 9 -3.8091 -9.9895 -0.6933 22 9 -5.4923 -9.1264 0.5877 23 9 -5.1884 -8.3829 -1.5510 24 6 -2.5529 -7.4286 -0.9597 25 6 1.1686 -4.8065 -0.2547 26 6 1.8173 -3.6483 0.1080 27 1 -0.4850 0.8399 -0.0004 28 1 -0.1504 -1.4216 -1.5689 29 1 -1.2763 -3.5108 -2.2018 30 1 -1.0908 -5.9115 -2.4606 31 1 0.0767 -6.8485 -1.4977 32 1 -1.8415 -4.3427 0.1745 33 1 -2.9985 -4.7985 -1.1000 34 1 -4.1683 -4.6082 1.0575 35 1 -3.0312 -5.7607 1.7977 36 1 -3.0584 -7.1296 -1.8780 37 1 -1.9433 -8.3117 -1.1508 38 1 1.5254 -5.7592 0.1080 39 1 2.6815 -3.6906 0.7544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612079537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:09 Heat of formation + Delta-G solvation = -174.753777 kcal Electronic energy + Delta-G solvation = -26464.368077 eV Core-core repulsion = 22149.492108 eV Total energy + Delta-G solvation = -4314.875969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.25541 -47.79308 -47.70617 -39.79570 -37.82790 -35.70901 -33.68512 -32.18879 -30.55831 -29.43409 -28.39127 -26.68928 -24.90632 -23.74484 -22.60281 -21.22558 -20.50135 -19.82715 -18.70130 -18.47739 -18.03376 -17.37811 -16.25805 -15.94221 -15.42294 -15.13214 -14.95095 -14.62641 -14.55568 -14.27192 -14.18859 -14.14855 -13.91692 -13.87190 -13.83369 -13.45848 -13.37900 -12.57083 -12.21673 -12.02796 -11.82276 -11.64298 -11.52100 -11.46900 -11.12823 -10.94559 -10.73939 -10.64388 -10.36267 -9.90069 -9.64314 -9.46536 -9.21570 -8.24219 -7.53365 -7.38518 -6.85072 -4.44009 2.32300 2.62762 2.98419 3.02319 3.03600 3.09630 3.21544 3.54303 3.82213 3.86461 4.19178 4.37707 4.54407 4.60797 4.80566 5.07716 5.20198 5.32990 5.49410 5.51714 5.62679 5.71799 5.81726 5.98654 6.13227 6.24392 6.27352 6.33718 6.75704 6.85885 6.99057 7.08046 7.16982 7.23174 7.28194 7.52363 7.77871 7.96635 8.02626 8.21159 8.54778 8.80867 8.88037 10.09097 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.002858 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.950172 B = 9795.232274 C =10229.922626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.165 4.165 11 C -0.093 4.093 12 C -0.222 4.222 13 C 0.121 3.879 14 N -0.527 5.527 15 C 0.016 3.984 16 C 0.067 3.933 17 O -0.371 6.371 18 C 0.053 3.947 19 H 0.110 0.890 20 C 0.466 3.534 21 F -0.176 7.176 22 F -0.176 7.176 23 F -0.176 7.176 24 C 0.020 3.980 25 C -0.067 4.067 26 C -0.229 4.229 27 H 0.281 0.719 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -11.394 -0.396 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.224 4.224 13 C -0.004 4.004 14 N -0.252 5.252 15 C -0.112 4.112 16 C -0.009 4.009 17 O -0.290 6.290 18 C -0.007 4.007 19 H 0.127 0.873 20 C 0.411 3.589 21 F -0.157 7.157 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.109 4.109 25 C -0.085 4.085 26 C -0.249 4.249 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.344 -11.390 0.012 13.552 hybrid contribution 0.005 0.880 -0.731 1.144 sum -7.339 -10.510 -0.720 12.839 Atomic orbital electron populations 1.69807 1.07595 1.29305 1.34896 1.25913 0.94734 1.01355 0.92163 0.86321 0.80797 0.80670 0.79109 1.19527 1.20005 1.18408 1.19629 0.98031 0.91258 1.40090 0.90410 1.17634 0.90930 0.92044 0.88203 1.21277 0.99429 0.96601 1.01175 1.20537 0.98301 0.92812 0.99564 1.18800 1.01469 0.92345 1.09785 1.20779 0.91703 0.96721 0.91213 1.62438 1.11975 1.06314 1.44472 1.22906 0.95659 0.94349 0.98298 1.22916 0.93031 0.88216 0.96773 1.87957 1.33520 1.20761 1.86810 1.23103 0.90342 0.86508 1.00773 0.87282 1.20173 0.80439 0.82358 0.75919 1.93198 1.77234 1.51827 1.93455 1.93202 1.66466 1.94056 1.62045 1.93198 1.82857 1.88826 1.50831 1.22693 0.94775 0.97975 0.95491 1.20338 0.95067 0.96451 0.96683 1.20980 1.04018 0.92926 1.06962 0.90818 0.86520 0.89919 0.95396 0.91166 0.86790 0.94070 0.87407 0.91579 0.92986 0.88778 0.89341 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 10.96 55.55 0.61 -18.93 16 2 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 8 H 0.08 1.92 7.90 -52.48 -0.41 1.50 16 9 C 0.11 2.90 5.57 -106.82 -0.60 2.31 16 10 C -0.17 -4.04 8.69 -38.87 -0.34 -4.38 16 11 C -0.09 -2.00 7.81 -39.66 -0.31 -2.31 16 12 C -0.22 -4.43 4.17 -104.33 -0.44 -4.87 16 13 C 0.12 1.99 5.43 -4.97 -0.03 1.96 16 14 N -0.53 -8.00 4.87 -235.75 -1.15 -9.14 16 15 C 0.02 0.24 4.65 -3.72 -0.02 0.23 16 16 C 0.07 0.88 7.01 37.20 0.26 1.14 16 17 O -0.37 -5.12 10.36 -35.23 -0.36 -5.48 16 18 C 0.05 0.65 2.78 -26.68 -0.07 0.57 16 19 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 20 C 0.47 5.51 2.85 37.16 0.11 5.62 16 21 F -0.18 -1.95 16.86 2.25 0.04 -1.91 16 22 F -0.18 -2.18 17.26 2.25 0.04 -2.14 16 23 F -0.18 -2.27 16.69 2.25 0.04 -2.23 16 24 C 0.02 0.25 4.66 -3.71 -0.02 0.23 16 25 C -0.07 -1.40 9.67 -39.66 -0.38 -1.78 16 26 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 27 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.12 2.98 6.18 -52.49 -0.32 2.66 16 29 H 0.08 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.03 0.45 8.02 -51.93 -0.42 0.03 16 31 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.11 2.10 5.91 -51.93 -0.31 1.79 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.69 7.72 -51.93 -0.40 0.29 16 37 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 38 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -25.66 331.96 -8.25 -33.90 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.79 Total: 5.32 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.64 Total: -17.35 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: -0.54 Total: -28.08 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.36 Total: -5.48 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.28 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.66 -8.25 -33.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612079537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.850 kcal (2) G-P(sol) polarization free energy of solvation -25.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds