Wall clock time and date at job start Fri Apr 10 2020 23:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00811 * 3 2 1 5 5 H 1.48506 * 109.46837 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46993 * 120.00329 * 3 2 1 7 7 C 1.39944 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 162.28774 * 7 2 1 9 9 C 1.41398 * 120.00134 * 342.55151 * 7 2 1 10 10 C 1.40714 * 120.24287 * 155.02246 * 9 7 2 11 11 C 1.37622 * 119.74394 * 179.69961 * 10 9 7 12 12 C 1.38631 * 120.24681 * 0.58243 * 11 10 9 13 13 C 1.50696 * 119.75239 * 179.69081 * 12 11 10 14 14 N 1.46897 * 109.47566 * 270.02643 * 13 12 11 15 15 C 1.47015 * 110.99882 * 293.63317 * 14 13 12 16 16 C 1.53099 * 109.25826 * 177.60259 * 15 14 13 17 17 O 1.43021 * 109.25735 * 56.84848 * 16 15 14 18 18 C 1.43018 * 113.73673 * 301.33269 * 17 16 15 19 19 H 1.08997 * 109.50401 * 298.72587 * 18 17 16 20 20 C 1.53008 * 109.53899 * 178.62624 * 18 17 16 21 21 F 1.39894 * 109.46880 * 300.19192 * 20 18 17 22 22 F 1.39896 * 109.47086 * 60.19285 * 20 18 17 23 23 F 1.39899 * 109.46926 * 180.19163 * 20 18 17 24 24 C 1.47014 * 111.00556 * 169.99619 * 14 13 12 25 25 C 1.38640 * 120.50229 * 359.71945 * 12 11 10 26 26 C 1.37624 * 120.24694 * 359.97307 * 25 12 11 27 27 H 0.97001 * 119.99746 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.13270 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87318 * 180.27700 * 11 10 9 30 30 H 1.09004 * 109.47106 * 30.02552 * 13 12 11 31 31 H 1.08998 * 109.47299 * 150.02402 * 13 12 11 32 32 H 1.08997 * 109.50696 * 297.53974 * 15 14 13 33 33 H 1.09002 * 109.50475 * 57.67347 * 15 14 13 34 34 H 1.09002 * 109.50965 * 296.91742 * 16 15 14 35 35 H 1.08995 * 109.50989 * 176.78481 * 16 15 14 36 36 H 1.08997 * 109.50597 * 302.33209 * 24 14 13 37 37 H 1.09002 * 109.50388 * 62.45841 * 24 14 13 38 38 H 1.07992 * 119.87884 * 179.97438 * 25 12 11 39 39 H 1.07993 * 120.12560 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2851 9 6 1.3496 -2.4085 0.3661 10 6 1.8187 -3.6486 -0.1053 11 6 1.1739 -4.8073 0.2630 12 6 0.0591 -4.7549 1.0853 13 6 -0.6425 -6.0301 1.4760 14 7 -1.6865 -6.3368 0.4891 15 6 -2.7578 -5.3307 0.5255 16 6 -3.7917 -5.6547 -0.5562 17 8 -4.2871 -6.9808 -0.3531 18 6 -3.2704 -7.9862 -0.3830 19 1 -2.7877 -7.9867 -1.3602 20 6 -3.8983 -9.3570 -0.1227 21 9 -4.5194 -9.3549 1.1308 22 9 -4.8476 -9.6306 -1.1131 23 9 -2.9019 -10.3386 -0.1479 24 6 -2.2313 -7.6858 0.7004 25 6 -0.4156 -3.5382 1.5506 26 6 0.2171 -2.3674 1.2002 27 1 -0.4850 0.8401 0.0004 28 1 2.6841 -3.6913 -0.7501 29 1 1.5349 -5.7605 -0.0940 30 1 0.0788 -6.8467 1.5076 31 1 -1.0967 -5.9083 2.4594 32 1 -3.2379 -5.3455 1.5039 33 1 -2.3357 -4.3428 0.3413 34 1 -3.3240 -5.5874 -1.5385 35 1 -4.6165 -4.9447 -0.4957 36 1 -1.4249 -8.4170 0.6440 37 1 -2.7030 -7.7382 1.6817 38 1 -1.2851 -3.5091 2.1904 39 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612079538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:11 Heat of formation + Delta-G solvation = -175.647655 kcal Electronic energy + Delta-G solvation = -26364.826608 eV Core-core repulsion = 22049.911878 eV Total energy + Delta-G solvation = -4314.914730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.26832 -47.80283 -47.72215 -39.79098 -37.76867 -35.73342 -33.68167 -32.22246 -30.60791 -29.40453 -28.36942 -26.69345 -24.97362 -23.70032 -22.63549 -21.15779 -20.53901 -19.88585 -18.71798 -18.49964 -18.04646 -17.35487 -16.29672 -15.94857 -15.44166 -15.10029 -15.01497 -14.65152 -14.57637 -14.33023 -14.18117 -14.10019 -13.91683 -13.88310 -13.84383 -13.50486 -13.40417 -12.55209 -12.25004 -11.97845 -11.84177 -11.65871 -11.53871 -11.35018 -11.12486 -10.98194 -10.78119 -10.67311 -10.38048 -9.96718 -9.62079 -9.43743 -9.19244 -8.25180 -7.50951 -7.36506 -6.82379 -4.41416 2.30597 2.66204 3.00984 3.02957 3.04501 3.09986 3.19837 3.53440 3.80977 3.88077 4.16423 4.35470 4.54343 4.61436 4.79594 5.00460 5.15503 5.28942 5.45274 5.48531 5.65518 5.67397 5.80994 5.92322 6.07230 6.15740 6.28113 6.33637 6.70404 6.87831 7.01111 7.06898 7.14195 7.24836 7.31511 7.55108 7.80784 7.99108 8.05973 8.24150 8.57568 8.83532 8.91200 10.11794 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.031322 B = 0.002793 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.731281 B =10021.151610 C =10414.954849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.228 4.228 11 C -0.067 4.067 12 C -0.214 4.214 13 C 0.122 3.878 14 N -0.525 5.525 15 C 0.014 3.986 16 C 0.067 3.933 17 O -0.371 6.371 18 C 0.053 3.947 19 H 0.111 0.889 20 C 0.466 3.534 21 F -0.176 7.176 22 F -0.176 7.176 23 F -0.175 7.175 24 C 0.020 3.980 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.281 0.719 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 -11.829 0.385 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.248 4.248 11 C -0.086 4.086 12 C -0.215 4.215 13 C -0.004 4.004 14 N -0.250 5.250 15 C -0.114 4.114 16 C -0.009 4.009 17 O -0.290 6.290 18 C -0.008 4.008 19 H 0.128 0.872 20 C 0.411 3.589 21 F -0.158 7.158 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.185 4.185 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.286 -11.722 -0.053 13.801 hybrid contribution 0.090 0.627 0.697 0.941 sum -7.196 -11.095 0.644 13.240 Atomic orbital electron populations 1.69808 1.07580 1.29346 1.34964 1.25904 0.94732 1.01312 0.92188 0.86373 0.80178 0.80208 0.80015 1.18985 1.20322 1.18822 1.19594 0.98080 0.91287 1.40227 0.90481 1.17619 0.90996 0.92012 0.88240 1.20979 1.04019 0.92916 1.06877 1.20322 0.95204 0.96367 0.96698 1.18770 1.00897 0.92271 1.09589 1.20766 0.91714 0.96890 0.90988 1.62378 1.11322 0.99580 1.51726 1.22889 0.91997 0.98684 0.97841 1.22878 0.97662 0.81413 0.98908 1.87953 1.31172 1.16113 1.93804 1.23122 0.89541 0.85197 1.02909 0.87179 1.20162 0.76600 0.87628 0.74474 1.93193 1.83490 1.96871 1.42201 1.93202 1.65956 1.94773 1.61824 1.93201 1.61315 1.64881 1.96261 1.22692 0.97225 0.94510 0.96481 1.20515 0.98268 0.92830 0.99717 1.21279 0.99406 0.96613 1.01199 0.90801 0.89085 0.89481 0.91309 0.95341 0.94185 0.87265 0.91364 0.87432 0.88680 0.93061 0.89901 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.73 10.95 55.55 0.61 -19.12 16 2 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 8 H 0.08 1.91 7.91 -52.48 -0.41 1.50 16 9 C 0.11 2.92 5.57 -106.83 -0.60 2.32 16 10 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 12 C -0.21 -4.30 4.92 -104.33 -0.51 -4.81 16 13 C 0.12 1.99 5.11 -4.98 -0.03 1.97 16 14 N -0.53 -7.92 4.72 -235.76 -1.11 -9.04 16 15 C 0.01 0.20 5.26 -3.71 -0.02 0.18 16 16 C 0.07 0.86 7.01 37.21 0.26 1.12 16 17 O -0.37 -4.97 10.36 -35.23 -0.37 -5.33 16 18 C 0.05 0.63 2.78 -26.68 -0.07 0.56 16 19 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 20 C 0.47 5.45 2.85 37.16 0.11 5.56 16 21 F -0.18 -2.22 16.69 2.25 0.04 -2.18 16 22 F -0.18 -2.16 17.26 2.25 0.04 -2.12 16 23 F -0.18 -1.94 16.86 2.25 0.04 -1.90 16 24 C 0.02 0.25 4.68 -3.72 -0.02 0.23 16 25 C -0.09 -2.04 7.89 -39.66 -0.31 -2.35 16 26 C -0.17 -4.08 8.70 -38.87 -0.34 -4.42 16 27 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 28 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 31 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 1.86 6.01 -51.93 -0.31 1.55 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.08 7.84 -51.93 -0.41 0.67 16 37 H 0.05 0.66 7.72 -51.93 -0.40 0.25 16 38 H 0.08 1.63 7.99 -52.49 -0.42 1.21 16 39 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -26.13 332.84 -8.28 -34.41 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.78 Total: 4.87 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.72 Total: -17.71 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: -0.50 Total: -28.15 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.37 Total: -5.33 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.11 Total: -6.20 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.13 -8.28 -34.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612079538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.239 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds