Wall clock time and date at job start Fri Apr 10 2020 23:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99618 * 2 1 3 5 5 C 1.52993 * 109.47576 * 303.31736 * 4 2 1 6 6 F 1.39903 * 109.47331 * 66.14958 * 5 4 2 7 7 F 1.39897 * 109.47680 * 186.15152 * 5 4 2 8 8 F 1.39905 * 109.47170 * 306.15334 * 5 4 2 9 9 N 1.46502 * 109.46810 * 120.00086 * 2 1 3 10 10 C 1.34778 * 119.99637 * 299.99865 * 9 2 1 11 11 O 1.21587 * 120.00278 * 359.97438 * 10 9 2 12 12 C 1.47647 * 119.99928 * 180.02562 * 10 9 2 13 13 C 1.40008 * 119.89632 * 180.02562 * 12 10 9 14 14 C 1.36324 * 120.10696 * 180.27115 * 13 12 10 15 15 C 1.40890 * 119.88951 * 359.50192 * 14 13 12 16 16 C 1.41111 * 120.10447 * 180.22963 * 15 14 13 17 17 H 1.07997 * 120.00105 * 201.95216 * 16 15 14 18 18 C 1.40218 * 119.99880 * 21.94683 * 16 15 14 19 19 N 1.30649 * 120.00282 * 21.68922 * 18 16 15 20 20 Si 1.86802 * 120.00207 * 201.68958 * 18 16 15 21 21 H 1.48497 * 109.46871 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47119 * 119.99956 * 20 18 16 23 23 H 1.48502 * 109.47385 * 240.00082 * 20 18 16 24 24 C 1.40894 * 119.79271 * 0.49689 * 15 14 13 25 25 C 1.36315 * 119.88973 * 359.75286 * 24 15 14 26 26 H 1.08998 * 109.47139 * 312.88840 * 1 2 3 27 27 H 1.08994 * 109.46636 * 72.89223 * 1 2 3 28 28 H 1.09000 * 109.47236 * 192.89284 * 1 2 3 29 29 H 1.08994 * 109.47494 * 177.69400 * 3 2 1 30 30 H 1.09003 * 109.46742 * 297.69673 * 3 2 1 31 31 H 1.09001 * 109.47023 * 57.69264 * 3 2 1 32 32 H 1.08999 * 109.47251 * 63.32233 * 4 2 1 33 33 H 1.09001 * 109.46843 * 183.32077 * 4 2 1 34 34 H 0.96998 * 120.00178 * 120.00536 * 9 2 1 35 35 H 1.08002 * 119.94910 * 359.97438 * 13 12 10 36 36 H 1.07992 * 120.05649 * 179.74303 * 14 13 12 37 37 H 0.96994 * 120.00590 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.05162 * 179.73553 * 24 15 14 39 39 H 1.08006 * 119.94348 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.4631 -2.1377 -1.2916 6 9 0.0771 -2.0715 -1.4702 7 9 2.0370 -2.8435 -2.3544 8 9 1.7474 -2.7933 -0.0888 9 7 2.0183 -0.6906 1.1962 10 6 1.6927 -0.2301 2.4203 11 8 0.9941 0.7588 2.5318 12 6 2.1852 -0.9258 3.6259 13 6 1.8451 -0.4458 4.8964 14 6 2.3020 -1.0816 6.0124 15 6 3.1090 -2.2294 5.8857 16 6 3.5805 -2.8939 7.0379 17 1 4.4532 -3.5271 6.9770 18 6 2.9159 -2.7318 8.2619 19 7 1.6690 -2.3422 8.2817 20 14 3.8133 -3.0729 9.8643 21 1 5.2058 -3.4972 9.5711 22 1 3.8358 -1.8397 10.6913 23 1 3.1118 -4.1525 10.6045 24 6 3.4486 -2.7086 4.6050 25 6 2.9911 -2.0632 3.4949 26 1 -0.3633 0.6994 0.7529 27 1 -0.3632 0.3023 -0.9822 28 1 -0.3634 -1.0017 0.2293 29 1 3.1292 1.4428 0.0413 30 1 1.7108 1.9442 -0.9100 31 1 1.6433 1.9681 0.8686 32 1 1.7261 -0.1743 -2.1382 33 1 3.1284 -0.7731 -1.2199 34 1 2.5760 -1.4793 1.1072 35 1 1.2237 0.4323 4.9925 36 1 2.0426 -0.7082 6.9920 37 1 1.2094 -2.2297 9.1284 38 1 4.0704 -3.5857 4.5030 39 1 3.2512 -2.4295 2.5127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614897355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:13 Heat of formation + Delta-G solvation = -178.614679 kcal Electronic energy + Delta-G solvation = -26791.374833 eV Core-core repulsion = 22476.331443 eV Total energy + Delta-G solvation = -4315.043390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.26035 -47.74875 -47.69628 -39.63258 -37.50683 -36.10348 -33.91620 -32.00603 -30.11567 -29.60702 -29.17370 -27.24419 -25.87938 -23.88648 -22.32576 -21.17738 -20.20717 -19.31630 -18.64754 -18.53611 -17.59104 -17.36983 -16.85991 -15.58631 -15.31631 -14.75467 -14.61336 -14.36256 -14.19666 -14.15960 -13.97647 -13.87835 -13.80476 -13.50184 -13.19748 -13.07057 -12.81293 -12.64977 -12.20507 -12.13627 -12.02077 -11.79517 -11.74686 -11.38271 -11.24817 -11.07617 -11.03329 -10.84975 -10.61978 -10.04341 -9.54961 -9.27982 -8.83122 -8.65718 -7.68328 -7.58897 -7.05543 -4.58777 2.25175 2.63014 2.89895 2.95653 3.01067 3.05398 3.47781 3.71978 3.73949 3.79002 3.87881 4.00107 4.54739 4.57406 4.79914 5.04977 5.13491 5.31465 5.59816 5.64922 5.69081 5.88332 5.99376 6.01339 6.12413 6.30573 6.38949 6.47889 6.79490 6.85113 6.96192 7.08208 7.12172 7.44387 7.64403 7.79379 7.89085 8.05822 8.25456 8.43427 8.63513 8.76944 9.09782 9.86277 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.003227 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.792953 B = 8675.118538 C = 9286.109780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.177 3.823 3 C -0.158 4.158 4 C -0.172 4.172 5 C 0.452 3.548 6 F -0.178 7.178 7 F -0.188 7.188 8 F -0.174 7.174 9 N -0.741 5.741 10 C 0.578 3.422 11 O -0.568 6.568 12 C -0.287 4.287 13 C -0.033 4.033 14 C -0.188 4.188 15 C 0.128 3.872 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.763 5.763 20 Si 0.911 3.089 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.237 4.237 25 C -0.046 4.046 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.398 0.602 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.287 0.713 38 H 0.096 0.904 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 1.907 -14.817 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.090 3.910 3 C -0.216 4.216 4 C -0.210 4.210 5 C 0.398 3.602 6 F -0.160 7.160 7 F -0.169 7.169 8 F -0.156 7.156 9 N -0.399 5.399 10 C 0.373 3.627 11 O -0.450 6.450 12 C -0.292 4.292 13 C -0.053 4.053 14 C -0.207 4.207 15 C 0.124 3.876 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.385 5.385 20 Si 0.734 3.266 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.197 1.197 24 C -0.257 4.257 25 C -0.065 4.065 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.238 0.762 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.438 2.597 -14.594 14.830 hybrid contribution 0.478 -0.953 0.580 1.213 sum 0.916 1.644 -14.014 14.140 Atomic orbital electron populations 1.22493 0.93514 1.04100 1.02681 1.20090 0.95085 0.92937 0.82888 1.22192 1.01166 0.94528 1.03741 1.23308 1.04322 0.90592 1.02783 1.20592 0.76493 0.89681 0.73464 1.93187 1.31185 1.96627 1.94970 1.93184 1.84553 1.81612 1.57583 1.93129 1.93133 1.83454 1.45839 1.46387 1.55869 1.32810 1.04841 1.18504 0.78409 0.83067 0.82722 1.90573 1.39962 1.27502 1.86953 1.18880 1.14492 1.03880 0.91909 1.20452 0.96048 0.97321 0.91448 1.20989 1.04837 0.97433 0.97469 1.17775 0.88164 0.89713 0.91916 1.19878 1.10865 1.23809 0.92328 0.89661 1.26123 0.94157 0.92524 1.01873 1.69776 1.09064 1.30052 1.29622 0.86209 0.80997 0.79131 0.80252 1.18009 1.19296 1.19652 1.20632 1.09762 1.02696 0.92598 1.20360 0.95589 0.94002 0.96588 0.89788 0.92146 0.91728 0.92480 0.92153 0.89185 0.85974 0.86709 0.76249 0.88222 0.86285 0.90141 0.88578 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 6.81 37.16 0.25 -2.06 16 2 C 0.18 2.25 0.74 -131.82 -0.10 2.15 16 3 C -0.16 -1.92 8.33 37.16 0.31 -1.61 16 4 C -0.17 -1.56 4.56 -26.74 -0.12 -1.68 16 5 C 0.45 5.03 2.98 37.15 0.11 5.14 16 6 F -0.18 -2.15 14.19 2.25 0.03 -2.12 16 7 F -0.19 -2.03 17.32 2.25 0.04 -2.00 16 8 F -0.17 -2.33 14.23 2.25 0.03 -2.30 16 9 N -0.74 -11.83 4.30 -48.60 -0.21 -12.04 16 10 C 0.58 11.80 7.18 -12.42 -0.09 11.71 16 11 O -0.57 -12.61 12.73 5.29 0.07 -12.54 16 12 C -0.29 -6.52 5.89 -104.73 -0.62 -7.14 16 13 C -0.03 -0.81 9.52 -39.61 -0.38 -1.19 16 14 C -0.19 -4.80 8.67 -39.27 -0.34 -5.14 16 15 C 0.13 3.25 5.59 -106.80 -0.60 2.66 16 16 C -0.44 -10.98 9.03 -37.75 -0.34 -11.33 16 17 H 0.09 2.01 7.94 -52.49 -0.42 1.60 16 18 C 0.08 1.78 5.07 -17.31 -0.09 1.69 16 19 N -0.76 -18.59 11.01 55.56 0.61 -17.98 16 20 Si 0.91 17.29 29.61 -169.99 -5.03 12.25 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 24 C -0.24 -5.53 9.73 -39.27 -0.38 -5.92 16 25 C -0.05 -1.00 9.47 -39.61 -0.38 -1.37 16 26 H 0.08 1.35 6.56 -51.93 -0.34 1.01 16 27 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 28 H 0.06 0.96 6.49 -51.93 -0.34 0.62 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.39 6.22 -51.93 -0.32 1.07 16 32 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 5.95 4.36 -40.82 -0.18 5.77 16 35 H 0.10 2.38 7.63 -52.49 -0.40 1.98 16 36 H 0.12 3.10 6.10 -52.49 -0.32 2.78 16 37 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 38 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.09 1.59 6.37 -52.48 -0.33 1.26 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -27.91 326.82 -6.60 -34.51 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.31 Total: 11.37 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.75 Total: -14.08 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.40 Total: -30.02 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.10 Total: -6.41 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.91 -6.60 -34.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614897355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.102 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds