Wall clock time and date at job start Fri Apr 10 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99618 * 2 1 3 5 5 C 1.52993 * 109.47576 * 303.31736 * 4 2 1 6 6 F 1.39903 * 109.47331 * 66.14958 * 5 4 2 7 7 F 1.39897 * 109.47680 * 186.15152 * 5 4 2 8 8 F 1.39905 * 109.47170 * 306.15334 * 5 4 2 9 9 N 1.46502 * 109.46810 * 120.00086 * 2 1 3 10 10 C 1.34778 * 119.99637 * 299.99865 * 9 2 1 11 11 O 1.21587 * 120.00278 * 359.97438 * 10 9 2 12 12 C 1.47647 * 119.99928 * 180.02562 * 10 9 2 13 13 C 1.40008 * 119.89632 * 180.02562 * 12 10 9 14 14 C 1.36324 * 120.10696 * 180.27115 * 13 12 10 15 15 C 1.40890 * 119.88951 * 359.50192 * 14 13 12 16 16 C 1.41111 * 120.10447 * 180.22963 * 15 14 13 17 17 H 1.07997 * 120.00105 * 201.95216 * 16 15 14 18 18 C 1.40218 * 119.99880 * 21.94683 * 16 15 14 19 19 N 1.30649 * 120.00282 * 21.68922 * 18 16 15 20 20 Si 1.86802 * 120.00207 * 201.68958 * 18 16 15 21 21 H 1.48497 * 109.46871 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47119 * 119.99956 * 20 18 16 23 23 H 1.48502 * 109.47385 * 240.00082 * 20 18 16 24 24 C 1.40894 * 119.79271 * 0.49689 * 15 14 13 25 25 C 1.36315 * 119.88973 * 359.75286 * 24 15 14 26 26 H 1.08998 * 109.47139 * 312.88840 * 1 2 3 27 27 H 1.08994 * 109.46636 * 72.89223 * 1 2 3 28 28 H 1.09000 * 109.47236 * 192.89284 * 1 2 3 29 29 H 1.08994 * 109.47494 * 177.69400 * 3 2 1 30 30 H 1.09003 * 109.46742 * 297.69673 * 3 2 1 31 31 H 1.09001 * 109.47023 * 57.69264 * 3 2 1 32 32 H 1.08999 * 109.47251 * 63.32233 * 4 2 1 33 33 H 1.09001 * 109.46843 * 183.32077 * 4 2 1 34 34 H 0.96998 * 120.00178 * 120.00536 * 9 2 1 35 35 H 1.08002 * 119.94910 * 359.97438 * 13 12 10 36 36 H 1.07992 * 120.05649 * 179.74303 * 14 13 12 37 37 H 0.96994 * 120.00590 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.05162 * 179.73553 * 24 15 14 39 39 H 1.08006 * 119.94348 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.4631 -2.1377 -1.2916 6 9 0.0771 -2.0715 -1.4702 7 9 2.0370 -2.8435 -2.3544 8 9 1.7474 -2.7933 -0.0888 9 7 2.0183 -0.6906 1.1962 10 6 1.6927 -0.2301 2.4203 11 8 0.9941 0.7588 2.5318 12 6 2.1852 -0.9258 3.6259 13 6 1.8451 -0.4458 4.8964 14 6 2.3020 -1.0816 6.0124 15 6 3.1090 -2.2294 5.8857 16 6 3.5805 -2.8939 7.0379 17 1 4.4532 -3.5271 6.9770 18 6 2.9159 -2.7318 8.2619 19 7 1.6690 -2.3422 8.2817 20 14 3.8133 -3.0729 9.8643 21 1 5.2058 -3.4972 9.5711 22 1 3.8358 -1.8397 10.6913 23 1 3.1118 -4.1525 10.6045 24 6 3.4486 -2.7086 4.6050 25 6 2.9911 -2.0632 3.4949 26 1 -0.3633 0.6994 0.7529 27 1 -0.3632 0.3023 -0.9822 28 1 -0.3634 -1.0017 0.2293 29 1 3.1292 1.4428 0.0413 30 1 1.7108 1.9442 -0.9100 31 1 1.6433 1.9681 0.8686 32 1 1.7261 -0.1743 -2.1382 33 1 3.1284 -0.7731 -1.2199 34 1 2.5760 -1.4793 1.1072 35 1 1.2237 0.4323 4.9925 36 1 2.0426 -0.7082 6.9920 37 1 1.2094 -2.2297 9.1284 38 1 4.0704 -3.5857 4.5030 39 1 3.2512 -2.4295 2.5127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614897355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:12 Heat of formation + Delta-G solvation = -193.358387 kcal Electronic energy + Delta-G solvation = -26792.014168 eV Core-core repulsion = 22476.331443 eV Total energy + Delta-G solvation = -4315.682725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.14330 -48.63471 -48.59529 -41.08908 -39.19153 -37.49410 -35.70903 -33.41821 -31.83557 -31.16311 -30.39082 -28.26677 -27.66182 -24.84601 -23.90474 -22.91834 -21.69690 -20.69289 -19.54410 -19.47089 -19.33386 -18.62589 -18.13497 -17.11412 -16.68268 -15.92978 -15.76086 -15.71302 -15.61081 -15.35651 -15.19229 -15.01692 -14.82799 -14.73194 -14.48324 -14.39340 -14.20382 -13.97273 -13.71298 -13.44731 -13.24533 -13.01727 -12.96773 -12.80422 -12.74552 -12.60114 -12.35140 -12.12586 -11.98648 -11.75623 -11.36083 -11.08090 -10.44324 -10.03554 -9.56095 -9.43629 -8.82477 -6.46964 0.47818 1.16179 1.36958 1.42030 1.55170 1.80884 2.13010 2.18499 2.30758 2.79057 2.87437 2.92756 3.12293 3.67583 3.71074 3.91501 4.09868 4.27456 4.35220 4.40926 4.42494 4.56666 4.73390 4.80170 4.88927 4.93967 4.97198 5.02070 5.20995 5.27399 5.33994 5.40388 5.58941 5.69242 5.80730 5.97006 6.03063 6.20688 6.55926 6.76205 6.76679 6.90640 7.53114 8.13075 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.003227 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.792953 B = 8675.118538 C = 9286.109780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.169 3.831 3 C -0.154 4.154 4 C -0.159 4.159 5 C 0.447 3.553 6 F -0.186 7.186 7 F -0.184 7.184 8 F -0.192 7.192 9 N -0.727 5.727 10 C 0.577 3.423 11 O -0.590 6.590 12 C -0.297 4.297 13 C -0.047 4.047 14 C -0.208 4.208 15 C 0.100 3.900 16 C -0.472 4.472 17 H 0.091 0.909 18 C 0.036 3.964 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.251 1.251 22 H -0.264 1.264 23 H -0.263 1.263 24 C -0.250 4.250 25 C -0.037 4.037 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.405 0.595 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.296 0.704 38 H 0.113 0.887 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 1.524 -16.885 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.197 4.197 5 C 0.394 3.606 6 F -0.167 7.167 7 F -0.166 7.166 8 F -0.173 7.173 9 N -0.383 5.383 10 C 0.370 3.630 11 O -0.474 6.474 12 C -0.302 4.302 13 C -0.066 4.066 14 C -0.228 4.228 15 C 0.097 3.903 16 C -0.499 4.499 17 H 0.109 0.891 18 C -0.183 4.183 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.174 1.174 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.269 4.269 25 C -0.056 4.056 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.179 0.821 33 H 0.158 0.842 34 H 0.245 0.755 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.709 2.202 -16.710 16.941 hybrid contribution 0.002 -0.809 1.079 1.348 sum 1.711 1.393 -15.631 15.786 Atomic orbital electron populations 1.22456 0.94315 1.02227 1.03482 1.20369 0.94597 0.93765 0.82965 1.22129 1.01578 0.93683 1.03796 1.23356 1.05641 0.88843 1.01876 1.20944 0.76265 0.90540 0.72899 1.93176 1.31948 1.96671 1.94945 1.93192 1.84418 1.81701 1.57274 1.93091 1.93216 1.83983 1.47029 1.46287 1.54818 1.32651 1.04555 1.18225 0.78382 0.82714 0.83634 1.90575 1.40886 1.28387 1.87532 1.19240 1.14228 1.04328 0.92382 1.20533 0.96341 0.97343 0.92410 1.20923 1.06324 0.98392 0.97113 1.18126 0.88755 0.90028 0.93431 1.20177 1.11578 1.24795 0.93304 0.89050 1.27030 0.94548 0.91706 1.05041 1.69817 1.10544 1.30653 1.31086 0.85075 0.79687 0.79123 0.75433 1.17436 1.18867 1.18714 1.20890 1.10248 1.03463 0.92345 1.20651 0.94136 0.92928 0.97909 0.92942 0.88891 0.93361 0.91546 0.88614 0.92982 0.82148 0.84237 0.75486 0.88921 0.87879 0.89262 0.86942 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 6.81 71.98 0.49 -3.78 16 2 C 0.17 3.84 0.74 3.60 0.00 3.84 16 3 C -0.15 -3.33 8.33 71.98 0.60 -2.73 16 4 C -0.16 -2.19 4.56 30.59 0.14 -2.06 16 5 C 0.45 8.58 2.98 71.98 0.21 8.80 16 6 F -0.19 -4.03 14.19 44.97 0.64 -3.39 16 7 F -0.18 -3.39 17.32 44.97 0.78 -2.62 16 8 F -0.19 -4.70 14.23 44.97 0.64 -4.06 16 9 N -0.73 -21.96 4.30 -425.93 -1.83 -23.79 16 10 C 0.58 23.56 7.18 86.73 0.62 24.18 16 11 O -0.59 -26.77 12.73 -3.99 -0.05 -26.82 16 12 C -0.30 -13.65 5.89 -19.93 -0.12 -13.77 16 13 C -0.05 -2.39 9.52 22.25 0.21 -2.18 16 14 C -0.21 -11.16 8.67 22.47 0.19 -10.96 16 15 C 0.10 5.24 5.59 -21.28 -0.12 5.12 16 16 C -0.47 -23.97 9.03 23.46 0.21 -23.75 16 17 H 0.09 4.36 7.94 -2.91 -0.02 4.34 16 18 C 0.04 1.72 5.07 85.35 0.43 2.16 16 19 N -0.80 -40.10 11.01 21.87 0.24 -39.86 16 20 Si 0.99 35.45 29.61 68.60 2.03 37.48 16 21 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 22 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 23 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 24 C -0.25 -11.68 9.73 22.47 0.22 -11.46 16 25 C -0.04 -1.59 9.47 22.25 0.21 -1.38 16 26 H 0.05 1.68 6.56 -2.39 -0.02 1.67 16 27 H 0.09 1.73 7.94 -2.39 -0.02 1.71 16 28 H 0.05 1.38 6.49 -2.39 -0.02 1.37 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.56 6.22 -2.39 -0.01 1.55 16 32 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.40 11.08 4.36 -92.71 -0.40 10.68 16 35 H 0.09 4.71 7.63 -2.91 -0.02 4.69 16 36 H 0.10 5.73 6.10 -2.91 -0.02 5.71 16 37 H 0.30 13.26 8.29 -92.71 -0.77 12.49 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.13 4.25 6.37 -2.91 -0.02 4.23 16 Total: -1.00 -64.09 326.82 6.46 -57.62 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.70 Total: 33.39 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.31 Total: -27.97 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -1.59 Total: -63.64 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.06 Total: -10.06 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -64.09 6.46 -57.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614897355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.736 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds