Wall clock time and date at job start Fri Apr 10 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 C 1.52998 * 109.46935 * 239.99794 * 2 1 3 5 5 C 1.53000 * 109.47249 * 304.25362 * 4 2 1 6 6 F 1.39897 * 109.47384 * 65.84859 * 5 4 2 7 7 F 1.39907 * 109.46997 * 185.84820 * 5 4 2 8 8 F 1.39893 * 109.47215 * 305.84396 * 5 4 2 9 9 N 1.46504 * 109.47060 * 120.00405 * 2 1 3 10 10 C 1.34775 * 119.99503 * 299.99655 * 9 2 1 11 11 O 1.21544 * 120.00237 * 359.97438 * 10 9 2 12 12 C 1.47887 * 119.99829 * 179.97438 * 10 9 2 13 13 C 1.39919 * 120.02405 * 359.97438 * 12 10 9 14 14 C 1.38332 * 120.36025 * 180.02562 * 13 12 10 15 15 C 1.37757 * 120.41118 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.03903 * 359.97438 * 15 14 13 17 17 C 1.41432 * 120.18015 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99611 * 28.80626 * 17 16 15 19 19 C 1.39939 * 120.00476 * 208.81181 * 17 16 15 20 20 N 1.30829 * 119.99478 * 9.98306 * 19 17 16 21 21 Si 1.86797 * 120.00213 * 189.98917 * 19 17 16 22 22 H 1.48498 * 109.47140 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47048 * 119.99661 * 21 19 17 24 24 H 1.48498 * 109.46893 * 239.99604 * 21 19 17 25 25 C 1.38992 * 120.02694 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.47246 * 308.95507 * 1 2 3 27 27 H 1.08997 * 109.47142 * 68.95260 * 1 2 3 28 28 H 1.09006 * 109.47263 * 188.95429 * 1 2 3 29 29 H 1.08996 * 109.47249 * 174.23980 * 3 2 1 30 30 H 1.09000 * 109.46996 * 294.24325 * 3 2 1 31 31 H 1.09002 * 109.46817 * 54.23377 * 3 2 1 32 32 H 1.08996 * 109.47199 * 64.25699 * 4 2 1 33 33 H 1.09005 * 109.47383 * 184.25416 * 4 2 1 34 34 H 0.97001 * 120.00276 * 119.99705 * 9 2 1 35 35 H 1.07993 * 119.82449 * 359.97438 * 13 12 10 36 36 H 1.07996 * 119.79686 * 180.02562 * 14 13 12 37 37 H 1.07999 * 119.98202 * 180.02562 * 15 14 13 38 38 H 0.97004 * 119.99673 * 180.02562 * 20 19 17 39 39 H 1.08004 * 120.20405 * 359.70908 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.4445 -2.1296 -1.3038 6 9 0.0600 -2.0438 -1.4858 7 9 2.0122 -2.8349 -2.3704 8 9 1.7168 -2.7978 -0.1054 9 7 2.0183 -0.6907 1.1962 10 6 1.6927 -0.2302 2.4202 11 8 0.9944 0.7583 2.5318 12 6 2.1852 -0.9277 3.6277 13 6 2.9887 -2.0661 3.4999 14 6 3.4527 -2.7242 4.6247 15 6 3.1297 -2.2666 5.8833 16 6 2.3235 -1.1225 6.0317 17 6 1.9905 -0.6498 7.3224 18 1 2.6628 -0.8211 8.1502 19 6 0.7902 0.0398 7.5270 20 7 -0.1112 0.0791 6.5796 21 14 0.4749 0.9041 9.1527 22 1 1.6415 0.7101 10.0509 23 1 0.2720 2.3551 8.9107 24 1 -0.7395 0.3338 9.7892 25 6 1.8502 -0.4530 4.8904 26 1 -0.3634 0.6461 0.7992 27 1 -0.3633 0.3691 -0.9591 28 1 -0.3634 -1.0152 0.1600 29 1 3.1252 1.4441 0.1031 30 1 1.7634 1.9256 -0.9370 31 1 1.5949 1.9852 0.8339 32 1 1.7402 -0.1654 -2.1375 33 1 3.1273 -0.7878 -1.2120 34 1 2.5760 -1.4794 1.1072 35 1 3.2474 -2.4334 2.5179 36 1 4.0726 -3.6017 4.5155 37 1 3.4961 -2.7856 6.7567 38 1 -0.9432 0.5574 6.7213 39 1 1.2341 0.4280 4.9938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614897726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:15 Heat of formation + Delta-G solvation = -174.184664 kcal Electronic energy + Delta-G solvation = -27088.267836 eV Core-core repulsion = 22773.416546 eV Total energy + Delta-G solvation = -4314.851290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.28115 -47.76739 -47.71252 -39.73879 -37.45271 -36.13053 -33.73006 -32.08135 -30.06439 -29.49397 -29.19416 -27.25295 -25.30706 -23.97448 -22.90386 -21.01660 -20.29162 -19.29595 -18.66036 -18.57076 -17.76918 -17.38173 -16.21788 -15.51388 -15.17048 -14.79679 -14.70403 -14.53098 -14.37142 -14.22206 -13.95220 -13.90194 -13.82928 -13.48121 -13.20614 -13.03516 -12.85869 -12.61972 -12.49986 -12.14714 -11.93134 -11.75992 -11.61589 -11.21671 -11.12563 -11.07256 -10.90697 -10.69252 -10.46629 -9.93593 -9.68729 -9.26455 -8.89535 -8.72439 -7.62352 -7.46432 -6.72307 -4.42343 2.20279 2.61325 2.82065 3.09224 3.14025 3.14139 3.41321 3.68623 3.76941 3.87175 3.94631 3.96503 4.54372 4.67111 4.78330 5.03055 5.11413 5.29467 5.57069 5.60412 5.67496 5.86425 5.91434 5.99891 6.08761 6.27857 6.37394 6.49720 6.71014 6.86370 7.00091 7.01885 7.23850 7.39528 7.70050 7.76316 7.92962 8.10128 8.20210 8.52405 8.83214 8.84326 8.95769 10.21343 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003721 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.849857 B = 7523.868121 C = 8182.867946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.176 3.824 3 C -0.159 4.159 4 C -0.171 4.171 5 C 0.452 3.548 6 F -0.177 7.177 7 F -0.188 7.188 8 F -0.174 7.174 9 N -0.736 5.736 10 C 0.571 3.429 11 O -0.539 6.539 12 C -0.132 4.132 13 C -0.210 4.210 14 C -0.102 4.102 15 C -0.206 4.206 16 C 0.097 3.903 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.793 5.793 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.084 4.084 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.401 0.599 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -0.728 -15.275 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.089 3.911 3 C -0.217 4.217 4 C -0.210 4.210 5 C 0.397 3.603 6 F -0.159 7.159 7 F -0.169 7.169 8 F -0.156 7.156 9 N -0.394 5.394 10 C 0.362 3.638 11 O -0.417 6.417 12 C -0.135 4.135 13 C -0.230 4.230 14 C -0.120 4.120 15 C -0.226 4.226 16 C 0.094 3.906 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.419 5.419 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.104 4.104 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.311 0.037 -15.246 15.421 hybrid contribution -0.043 -0.460 0.515 0.692 sum 2.268 -0.423 -14.731 14.911 Atomic orbital electron populations 1.22555 0.93344 1.04172 1.03223 1.20130 0.95234 0.92975 0.82737 1.22191 1.01454 0.94441 1.03567 1.23304 1.04149 0.90789 1.02728 1.20591 0.76687 0.89494 0.73482 1.93180 1.31352 1.96453 1.94885 1.93187 1.84798 1.81611 1.57331 1.93138 1.93380 1.82894 1.46172 1.46399 1.55408 1.32751 1.04811 1.18742 0.78771 0.83333 0.82988 1.90633 1.37865 1.26430 1.86789 1.19502 1.03148 0.98283 0.92596 1.20393 1.06341 0.99711 0.96553 1.20448 0.99928 0.98594 0.93062 1.21172 1.07344 0.98629 0.95421 1.17630 0.89995 0.89614 0.93339 1.19603 1.03523 1.31075 0.94920 0.90201 1.25936 0.95532 0.94553 0.98663 1.69768 1.06169 1.32703 1.33231 0.86188 0.79111 0.79454 0.81542 1.18469 1.19690 1.19953 1.21715 0.99372 1.00021 0.89319 0.89546 0.91958 0.91510 0.92319 0.92006 0.89246 0.85876 0.86657 0.76018 0.89272 0.88884 0.88581 0.90657 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 6.92 37.16 0.26 -2.18 16 2 C 0.18 2.25 0.74 -131.82 -0.10 2.15 16 3 C -0.16 -1.94 8.30 37.16 0.31 -1.63 16 4 C -0.17 -1.54 4.58 -26.73 -0.12 -1.66 16 5 C 0.45 4.97 2.96 37.16 0.11 5.08 16 6 F -0.18 -2.13 14.11 2.25 0.03 -2.10 16 7 F -0.19 -2.00 17.32 2.25 0.04 -1.96 16 8 F -0.17 -2.30 14.31 2.25 0.03 -2.27 16 9 N -0.74 -11.75 4.30 -48.53 -0.21 -11.96 16 10 C 0.57 11.96 7.19 -12.31 -0.09 11.87 16 11 O -0.54 -12.50 12.72 5.33 0.07 -12.44 16 12 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 13 C -0.21 -4.42 9.55 -38.92 -0.37 -4.80 16 14 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 15 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 16 C 0.10 2.55 5.55 -106.87 -0.59 1.95 16 17 C -0.46 -12.13 9.06 -37.73 -0.34 -12.47 16 18 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 19 C 0.07 1.79 5.27 -17.34 -0.09 1.70 16 20 N -0.79 -21.07 10.80 55.55 0.60 -20.46 16 21 Si 0.91 18.86 29.57 -169.99 -5.03 13.84 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.08 -2.22 8.19 -38.44 -0.31 -2.54 16 26 H 0.09 1.46 6.42 -51.93 -0.33 1.12 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.07 1.00 6.18 -51.93 -0.32 0.68 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.40 6.31 -51.93 -0.33 1.07 16 32 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 5.90 4.46 -40.82 -0.18 5.71 16 35 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.14 3.90 5.78 -52.48 -0.30 3.60 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -29.13 326.88 -6.58 -35.72 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.31 Total: 10.77 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.74 Total: -14.07 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.39 Total: -32.43 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.10 Total: -6.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.13 -6.58 -35.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614897726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.467 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds