Wall clock time and date at job start Fri Apr 10 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 C 1.52998 * 109.46935 * 239.99794 * 2 1 3 5 5 C 1.53000 * 109.47249 * 304.25362 * 4 2 1 6 6 F 1.39897 * 109.47384 * 65.84859 * 5 4 2 7 7 F 1.39907 * 109.46997 * 185.84820 * 5 4 2 8 8 F 1.39893 * 109.47215 * 305.84396 * 5 4 2 9 9 N 1.46504 * 109.47060 * 120.00405 * 2 1 3 10 10 C 1.34775 * 119.99503 * 299.99655 * 9 2 1 11 11 O 1.21544 * 120.00237 * 359.97438 * 10 9 2 12 12 C 1.47887 * 119.99829 * 179.97438 * 10 9 2 13 13 C 1.39919 * 120.02405 * 359.97438 * 12 10 9 14 14 C 1.38332 * 120.36025 * 180.02562 * 13 12 10 15 15 C 1.37757 * 120.41118 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.03903 * 359.97438 * 15 14 13 17 17 C 1.41432 * 120.18015 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99611 * 28.80626 * 17 16 15 19 19 C 1.39939 * 120.00476 * 208.81181 * 17 16 15 20 20 N 1.30829 * 119.99478 * 9.98306 * 19 17 16 21 21 Si 1.86797 * 120.00213 * 189.98917 * 19 17 16 22 22 H 1.48498 * 109.47140 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47048 * 119.99661 * 21 19 17 24 24 H 1.48498 * 109.46893 * 239.99604 * 21 19 17 25 25 C 1.38992 * 120.02694 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.47246 * 308.95507 * 1 2 3 27 27 H 1.08997 * 109.47142 * 68.95260 * 1 2 3 28 28 H 1.09006 * 109.47263 * 188.95429 * 1 2 3 29 29 H 1.08996 * 109.47249 * 174.23980 * 3 2 1 30 30 H 1.09000 * 109.46996 * 294.24325 * 3 2 1 31 31 H 1.09002 * 109.46817 * 54.23377 * 3 2 1 32 32 H 1.08996 * 109.47199 * 64.25699 * 4 2 1 33 33 H 1.09005 * 109.47383 * 184.25416 * 4 2 1 34 34 H 0.97001 * 120.00276 * 119.99705 * 9 2 1 35 35 H 1.07993 * 119.82449 * 359.97438 * 13 12 10 36 36 H 1.07996 * 119.79686 * 180.02562 * 14 13 12 37 37 H 1.07999 * 119.98202 * 180.02562 * 15 14 13 38 38 H 0.97004 * 119.99673 * 180.02562 * 20 19 17 39 39 H 1.08004 * 120.20405 * 359.70908 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.4445 -2.1296 -1.3038 6 9 0.0600 -2.0438 -1.4858 7 9 2.0122 -2.8349 -2.3704 8 9 1.7168 -2.7978 -0.1054 9 7 2.0183 -0.6907 1.1962 10 6 1.6927 -0.2302 2.4202 11 8 0.9944 0.7583 2.5318 12 6 2.1852 -0.9277 3.6277 13 6 2.9887 -2.0661 3.4999 14 6 3.4527 -2.7242 4.6247 15 6 3.1297 -2.2666 5.8833 16 6 2.3235 -1.1225 6.0317 17 6 1.9905 -0.6498 7.3224 18 1 2.6628 -0.8211 8.1502 19 6 0.7902 0.0398 7.5270 20 7 -0.1112 0.0791 6.5796 21 14 0.4749 0.9041 9.1527 22 1 1.6415 0.7101 10.0509 23 1 0.2720 2.3551 8.9107 24 1 -0.7395 0.3338 9.7892 25 6 1.8502 -0.4530 4.8904 26 1 -0.3634 0.6461 0.7992 27 1 -0.3633 0.3691 -0.9591 28 1 -0.3634 -1.0152 0.1600 29 1 3.1252 1.4441 0.1031 30 1 1.7634 1.9256 -0.9370 31 1 1.5949 1.9852 0.8339 32 1 1.7402 -0.1654 -2.1375 33 1 3.1273 -0.7878 -1.2120 34 1 2.5760 -1.4794 1.1072 35 1 3.2474 -2.4334 2.5179 36 1 4.0726 -3.6017 4.5155 37 1 3.4961 -2.7856 6.7567 38 1 -0.9432 0.5574 6.7213 39 1 1.2341 0.4280 4.9938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614897726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:14 Heat of formation + Delta-G solvation = -190.685483 kcal Electronic energy + Delta-G solvation = -27088.983366 eV Core-core repulsion = 22773.416546 eV Total energy + Delta-G solvation = -4315.566819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.15331 -48.63380 -48.60813 -41.21788 -39.12190 -37.55481 -35.59043 -33.54329 -31.59385 -31.25301 -30.36993 -28.30543 -27.20549 -25.08271 -24.30834 -22.82403 -21.67284 -20.73178 -19.66143 -19.53953 -19.28977 -18.43129 -17.80776 -16.97990 -16.67066 -16.44000 -15.85722 -15.70102 -15.64432 -15.34767 -15.19535 -15.01204 -14.83909 -14.74992 -14.51184 -14.41208 -14.25046 -14.18854 -13.51152 -13.49447 -13.09546 -13.05114 -12.87934 -12.79881 -12.74011 -12.49813 -12.22063 -12.17136 -12.01634 -11.75146 -11.49744 -11.12650 -10.53647 -10.12596 -9.44947 -9.34304 -8.59710 -6.40331 0.40054 1.01333 1.37074 1.46235 1.52896 1.79910 2.13125 2.18546 2.21861 2.82080 2.85243 2.90838 3.11219 3.64901 3.69392 3.88133 4.03638 4.10789 4.36887 4.41545 4.54939 4.57726 4.69274 4.74375 4.85346 4.89394 4.93102 5.09936 5.18110 5.29858 5.35257 5.37651 5.52937 5.59657 5.87002 5.92812 6.07060 6.29553 6.53128 6.70892 6.90130 6.95278 7.38263 8.35794 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003721 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.849857 B = 7523.868121 C = 8182.867946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.158 4.158 5 C 0.448 3.552 6 F -0.186 7.186 7 F -0.183 7.183 8 F -0.191 7.191 9 N -0.717 5.717 10 C 0.566 3.434 11 O -0.570 6.570 12 C -0.143 4.143 13 C -0.193 4.193 14 C -0.100 4.100 15 C -0.212 4.212 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.835 5.835 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.270 1.270 24 H -0.266 1.266 25 C -0.121 4.121 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.409 0.591 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.284 0.716 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -1.623 -17.562 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.196 4.196 5 C 0.394 3.606 6 F -0.168 7.168 7 F -0.165 7.165 8 F -0.173 7.173 9 N -0.374 5.374 10 C 0.356 3.644 11 O -0.451 6.451 12 C -0.147 4.147 13 C -0.213 4.213 14 C -0.118 4.118 15 C -0.232 4.232 16 C 0.063 3.937 17 C -0.528 4.528 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.462 5.462 21 Si 0.806 3.194 22 H -0.175 1.175 23 H -0.195 1.195 24 H -0.191 1.191 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.249 0.751 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.951 -0.892 -17.575 18.036 hybrid contribution -0.481 -0.296 1.027 1.172 sum 3.469 -1.188 -16.548 16.950 Atomic orbital electron populations 1.22516 0.94428 1.02495 1.03554 1.20399 0.94545 0.93822 0.82948 1.22133 1.01638 0.93620 1.03849 1.23349 1.05545 0.89102 1.01602 1.20924 0.76422 0.90312 0.72976 1.93168 1.32219 1.96497 1.94867 1.93198 1.84636 1.81664 1.56978 1.93099 1.93446 1.83412 1.47305 1.46276 1.54243 1.32549 1.04297 1.18531 0.78794 0.83020 0.84051 1.90633 1.39252 1.27773 1.87422 1.19882 1.02980 0.99089 0.92717 1.20860 1.03908 0.97883 0.98606 1.20919 0.99473 0.99504 0.91914 1.21462 1.06555 0.97906 0.97297 1.17976 0.91245 0.90933 0.93571 1.19881 1.04496 1.33157 0.95297 0.89993 1.26832 0.94850 0.94728 1.02277 1.69887 1.06760 1.34054 1.35490 0.85100 0.79280 0.77993 0.76980 1.17522 1.19460 1.19096 1.21511 1.01307 1.00211 0.91144 0.93376 0.88678 0.92887 0.91402 0.88278 0.93354 0.82054 0.83932 0.75058 0.85170 0.84519 0.87346 0.90541 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 6.92 71.98 0.50 -4.12 16 2 C 0.17 3.91 0.74 3.60 0.00 3.91 16 3 C -0.15 -3.45 8.30 71.98 0.60 -2.86 16 4 C -0.16 -2.13 4.58 30.59 0.14 -1.99 16 5 C 0.45 8.36 2.96 71.98 0.21 8.58 16 6 F -0.19 -4.03 14.11 44.97 0.63 -3.39 16 7 F -0.18 -3.24 17.32 44.97 0.78 -2.46 16 8 F -0.19 -4.52 14.31 44.97 0.64 -3.87 16 9 N -0.72 -21.81 4.30 -425.73 -1.83 -23.64 16 10 C 0.57 24.15 7.19 86.80 0.62 24.77 16 11 O -0.57 -27.92 12.72 -3.85 -0.05 -27.97 16 12 C -0.14 -6.80 5.87 -20.13 -0.12 -6.92 16 13 C -0.19 -7.74 9.55 22.70 0.22 -7.52 16 14 C -0.10 -4.04 10.01 22.18 0.22 -3.82 16 15 C -0.21 -10.05 9.78 22.77 0.22 -9.83 16 16 C 0.06 3.56 5.55 -21.32 -0.12 3.44 16 17 C -0.50 -27.45 9.06 23.47 0.21 -27.24 16 18 H 0.08 4.27 7.87 -2.91 -0.02 4.25 16 19 C 0.03 1.39 5.27 85.25 0.45 1.84 16 20 N -0.84 -47.22 10.80 21.83 0.24 -46.99 16 21 Si 0.99 40.16 29.57 68.60 2.03 42.19 16 22 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 C -0.12 -6.75 8.19 23.01 0.19 -6.57 16 26 H 0.05 1.67 6.42 -2.39 -0.02 1.66 16 27 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.05 1.56 6.18 -2.38 -0.01 1.54 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.52 6.31 -2.39 -0.02 1.50 16 32 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.41 10.85 4.46 -92.71 -0.41 10.44 16 35 H 0.13 4.10 6.38 -2.91 -0.02 4.08 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 39 H 0.10 6.37 5.78 -2.91 -0.02 6.36 16 Total: -1.00 -69.90 326.88 6.48 -63.42 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.69 Total: 31.03 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.35 Total: -28.32 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.60 Total: -70.63 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 2.06 Total: -9.73 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -69.90 6.48 -63.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614897726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.263 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds