Wall clock time and date at job start Fri Apr 10 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47504 * 265.08930 * 3 2 1 5 5 H 1.48500 * 109.47038 * 25.09352 * 3 2 1 6 6 H 1.48502 * 109.46957 * 145.08961 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99819 * 358.86537 * 7 2 1 9 9 C 1.50702 * 120.00172 * 178.86783 * 7 2 1 10 10 C 1.53003 * 115.54890 * 89.58597 * 9 7 2 11 11 N 1.46491 * 109.47462 * 39.74904 * 10 9 7 12 12 C 1.34624 * 125.74500 * 122.39731 * 11 10 9 13 13 N 1.30860 * 107.64426 * 179.75460 * 12 11 10 14 14 C 1.34594 * 107.27205 * 0.41977 * 13 12 11 15 15 C 1.47771 * 126.05657 * 179.83896 * 14 13 12 16 16 O 1.21577 * 119.99844 * 184.77989 * 15 14 13 17 17 C 1.47602 * 120.00116 * 4.77854 * 15 14 13 18 18 C 1.39766 * 120.12880 * 174.60241 * 17 15 14 19 19 C 1.37795 * 119.87072 * 179.97438 * 18 17 15 20 20 C 1.38697 * 120.12683 * 0.25846 * 19 18 17 21 21 F 1.35098 * 119.86861 * 179.72095 * 20 19 18 22 22 C 1.38690 * 120.25826 * 359.48823 * 20 19 18 23 23 C 1.37792 * 120.12603 * 0.50794 * 22 20 19 24 24 N 1.28849 * 125.74302 * 302.41885 * 11 10 9 25 25 C 1.53004 * 117.51851 * 235.28189 * 9 7 2 26 26 C 1.52999 * 117.49983 * 303.91300 * 9 7 2 27 27 H 0.97004 * 120.00306 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46592 * 279.74764 * 10 9 7 29 29 H 1.09003 * 109.46909 * 159.75345 * 10 9 7 30 30 H 1.07995 * 126.18255 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.06125 * 359.96009 * 18 17 15 32 32 H 1.08004 * 119.93496 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.93647 * 180.25706 * 22 20 19 34 34 H 1.08007 * 120.06393 * 179.72394 * 23 22 20 35 35 H 1.08993 * 117.50087 * 214.97010 * 25 9 7 36 36 H 1.09004 * 117.49559 * 359.97438 * 25 9 7 37 37 H 1.09000 * 117.49404 * 359.97438 * 26 9 7 38 38 H 1.08996 * 117.50083 * 144.99527 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6004 1.9866 -1.3949 5 1 1.3984 2.6804 0.5938 6 1 3.4909 1.4724 0.8013 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0176 9 6 3.5113 -1.1941 -0.0263 10 6 4.1947 -1.1711 1.3424 11 7 3.4629 -2.0391 2.2683 12 6 3.9788 -3.0866 2.9383 13 7 3.0207 -3.6039 3.6641 14 6 1.9097 -2.8799 3.4341 15 6 0.5816 -3.1085 4.0402 16 8 -0.3706 -2.4396 3.6881 17 6 0.4110 -4.1490 5.0732 18 6 -0.8151 -4.2923 5.7288 19 6 -0.9686 -5.2658 6.6919 20 6 0.0921 -6.0989 7.0149 21 9 -0.0625 -7.0479 7.9640 22 6 1.3095 -5.9648 6.3640 23 6 1.4747 -4.9950 5.3992 24 7 2.2171 -1.9287 2.5781 25 6 4.1991 -1.9774 -1.1463 26 6 4.1983 -0.4476 -1.1716 27 1 -0.4851 0.8401 -0.0004 28 1 4.2010 -0.1517 1.7282 29 1 5.2197 -1.5282 1.2427 30 1 4.9999 -3.4347 2.8888 31 1 -1.6404 -3.6412 5.4811 32 1 -1.9154 -5.3772 7.1994 33 1 2.1307 -6.6190 6.6168 34 1 2.4245 -4.8885 4.8961 35 1 5.1384 -2.4763 -0.9080 36 1 3.5617 -2.4933 -1.8644 37 1 3.5603 0.0432 -1.9066 38 1 5.1371 0.0600 -0.9500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000664114065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:17 Heat of formation + Delta-G solvation = 83.960829 kcal Electronic energy + Delta-G solvation = -25348.185158 eV Core-core repulsion = 21495.217083 eV Total energy + Delta-G solvation = -3852.968075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.03267 -42.79770 -39.52423 -37.71016 -37.34992 -33.57014 -32.11565 -31.22143 -31.03026 -30.80978 -27.50065 -25.74837 -24.53370 -23.00588 -22.48119 -21.89804 -21.54126 -19.79447 -19.22538 -17.73632 -17.48045 -16.51400 -16.23011 -16.02772 -15.69887 -15.62181 -15.05548 -14.79284 -14.62564 -14.13867 -13.92570 -13.65980 -13.56789 -13.13740 -13.07366 -12.77240 -12.63115 -12.59314 -12.07544 -11.48433 -11.26944 -10.91732 -10.81120 -10.63758 -10.40351 -9.95070 -9.84880 -9.66261 -9.46810 -9.27489 -9.15294 -8.97346 -8.74379 -8.70514 -8.50612 -6.07806 -4.09403 0.58152 1.25849 2.02176 2.47804 2.89210 3.22250 3.28246 3.34952 3.39996 3.93259 4.00399 4.15976 4.37508 4.59868 4.62827 4.75704 4.81615 4.98853 5.11979 5.19296 5.29229 5.35810 5.56156 5.62783 5.65940 5.83397 5.85664 5.98071 6.03827 6.13909 6.18685 6.23605 6.35849 6.46486 6.66816 6.71654 6.81729 6.88970 6.93705 7.21400 7.61243 7.80968 8.44438 8.73982 8.94857 9.51832 11.04200 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003630 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.072005 B = 7710.827067 C = 8557.188508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.092 3.908 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.471 4.471 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.140 3.860 11 N -0.264 5.264 12 C 0.162 3.838 13 N -0.494 5.494 14 C 0.070 3.930 15 C 0.491 3.509 16 O -0.418 6.418 17 C -0.159 4.159 18 C -0.034 4.034 19 C -0.175 4.175 20 C 0.120 3.880 21 F -0.141 7.141 22 C -0.174 4.174 23 C -0.040 4.040 24 N -0.158 5.158 25 C -0.177 4.177 26 C -0.190 4.190 27 H 0.265 0.735 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.215 0.785 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.184 0.816 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 -8.157 9.884 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.113 4.113 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.508 4.508 8 H 0.094 0.906 9 C -0.023 4.023 10 C 0.019 3.981 11 N -0.060 5.060 12 C -0.132 4.132 13 N -0.221 5.221 14 C -0.203 4.203 15 C 0.364 3.636 16 O -0.286 6.286 17 C -0.161 4.161 18 C -0.052 4.052 19 C -0.193 4.193 20 C 0.101 3.899 21 F -0.119 7.119 22 C -0.193 4.193 23 C -0.058 4.058 24 N 0.000 5.000 25 C -0.214 4.214 26 C -0.228 4.228 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.232 0.768 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.201 0.799 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.956 -7.513 9.748 14.137 hybrid contribution 0.836 0.681 -0.024 1.079 sum 7.792 -6.832 9.724 14.211 Atomic orbital electron populations 1.69862 1.06311 1.27002 1.47891 1.24863 0.94412 0.98447 0.93535 0.86952 0.79879 0.84172 0.78176 1.20416 1.22090 1.19335 1.19912 0.84918 0.94642 1.51356 0.90623 1.19638 0.96382 1.01317 0.84972 1.22141 0.92393 0.93359 0.90161 1.47349 1.06243 1.22087 1.30343 1.26263 1.01064 0.90649 0.95176 1.70629 0.99045 1.28168 1.24242 1.24188 0.96320 0.97177 1.02647 1.18797 0.84030 0.81136 0.79598 1.90723 1.39952 1.42619 1.55286 1.20280 0.95392 0.99885 1.00506 1.21248 0.96675 0.95270 0.92056 1.21018 0.99034 0.97794 1.01501 1.18117 0.95266 0.88065 0.88461 1.91493 1.96258 1.62212 1.61946 1.21203 0.96582 1.02018 0.99471 1.22517 1.00898 0.89777 0.92615 1.75083 0.95409 1.20681 1.08787 1.22955 1.00787 0.93306 1.04344 1.22989 1.01248 0.94738 1.03797 0.92483 0.89008 0.89359 0.76825 0.83849 0.84369 0.84388 0.79905 0.90795 0.89178 0.88696 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.09 2.56 5.47 -17.83 -0.10 2.46 16 3 Si 0.88 20.81 24.91 -169.99 -4.23 16.58 16 4 H -0.28 -6.35 6.91 56.52 0.39 -5.96 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.27 -5.78 5.68 56.52 0.32 -5.46 16 7 C -0.47 -12.39 7.10 -34.44 -0.24 -12.64 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 9 C -0.02 -0.43 1.26 -155.66 -0.20 -0.63 16 10 C 0.14 2.40 6.45 -4.04 -0.03 2.37 16 11 N -0.26 -4.89 3.34 -62.58 -0.21 -5.10 16 12 C 0.16 2.39 12.57 -90.45 -1.14 1.25 16 13 N -0.49 -8.22 8.09 -12.36 -0.10 -8.32 16 14 C 0.07 1.42 7.79 -156.27 -1.22 0.20 16 15 C 0.49 9.77 7.13 -31.87 -0.23 9.54 16 16 O -0.42 -9.73 17.10 5.30 0.09 -9.64 16 17 C -0.16 -2.50 5.88 -104.93 -0.62 -3.12 16 18 C -0.03 -0.47 9.59 -39.17 -0.38 -0.84 16 19 C -0.17 -2.06 10.01 -39.57 -0.40 -2.45 16 20 C 0.12 1.45 7.31 -39.25 -0.29 1.16 16 21 F -0.14 -1.67 17.26 2.25 0.04 -1.64 16 22 C -0.17 -2.05 10.01 -39.58 -0.40 -2.45 16 23 C -0.04 -0.55 9.38 -39.17 -0.37 -0.92 16 24 N -0.16 -3.60 9.88 32.08 0.32 -3.28 16 25 C -0.18 -3.10 9.88 -26.73 -0.26 -3.36 16 26 C -0.19 -3.48 7.57 -26.73 -0.20 -3.69 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.09 1.62 6.58 -51.93 -0.34 1.28 16 29 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 30 H 0.22 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.14 1.89 7.66 -52.49 -0.40 1.49 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.18 2.53 4.76 -52.48 -0.25 2.28 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.09 1.91 6.84 -51.93 -0.36 1.56 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -32.83 330.23 -8.34 -41.17 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.94 Total: 4.12 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -6.05 Total: -13.10 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.78 Total: -42.47 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.23 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.83 -8.34 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000664114065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.129 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds