Wall clock time and date at job start Fri Apr 10 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47504 * 265.08930 * 3 2 1 5 5 H 1.48500 * 109.47038 * 25.09352 * 3 2 1 6 6 H 1.48502 * 109.46957 * 145.08961 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99819 * 358.86537 * 7 2 1 9 9 C 1.50702 * 120.00172 * 178.86783 * 7 2 1 10 10 C 1.53003 * 115.54890 * 89.58597 * 9 7 2 11 11 N 1.46491 * 109.47462 * 39.74904 * 10 9 7 12 12 C 1.34624 * 125.74500 * 122.39731 * 11 10 9 13 13 N 1.30860 * 107.64426 * 179.75460 * 12 11 10 14 14 C 1.34594 * 107.27205 * 0.41977 * 13 12 11 15 15 C 1.47771 * 126.05657 * 179.83896 * 14 13 12 16 16 O 1.21577 * 119.99844 * 184.77989 * 15 14 13 17 17 C 1.47602 * 120.00116 * 4.77854 * 15 14 13 18 18 C 1.39766 * 120.12880 * 174.60241 * 17 15 14 19 19 C 1.37795 * 119.87072 * 179.97438 * 18 17 15 20 20 C 1.38697 * 120.12683 * 0.25846 * 19 18 17 21 21 F 1.35098 * 119.86861 * 179.72095 * 20 19 18 22 22 C 1.38690 * 120.25826 * 359.48823 * 20 19 18 23 23 C 1.37792 * 120.12603 * 0.50794 * 22 20 19 24 24 N 1.28849 * 125.74302 * 302.41885 * 11 10 9 25 25 C 1.53004 * 117.51851 * 235.28189 * 9 7 2 26 26 C 1.52999 * 117.49983 * 303.91300 * 9 7 2 27 27 H 0.97004 * 120.00306 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46592 * 279.74764 * 10 9 7 29 29 H 1.09003 * 109.46909 * 159.75345 * 10 9 7 30 30 H 1.07995 * 126.18255 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.06125 * 359.96009 * 18 17 15 32 32 H 1.08004 * 119.93496 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.93647 * 180.25706 * 22 20 19 34 34 H 1.08007 * 120.06393 * 179.72394 * 23 22 20 35 35 H 1.08993 * 117.50087 * 214.97010 * 25 9 7 36 36 H 1.09004 * 117.49559 * 359.97438 * 25 9 7 37 37 H 1.09000 * 117.49404 * 359.97438 * 26 9 7 38 38 H 1.08996 * 117.50083 * 144.99527 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6004 1.9866 -1.3949 5 1 1.3984 2.6804 0.5938 6 1 3.4909 1.4724 0.8013 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0176 9 6 3.5113 -1.1941 -0.0263 10 6 4.1947 -1.1711 1.3424 11 7 3.4629 -2.0391 2.2683 12 6 3.9788 -3.0866 2.9383 13 7 3.0207 -3.6039 3.6641 14 6 1.9097 -2.8799 3.4341 15 6 0.5816 -3.1085 4.0402 16 8 -0.3706 -2.4396 3.6881 17 6 0.4110 -4.1490 5.0732 18 6 -0.8151 -4.2923 5.7288 19 6 -0.9686 -5.2658 6.6919 20 6 0.0921 -6.0989 7.0149 21 9 -0.0625 -7.0479 7.9640 22 6 1.3095 -5.9648 6.3640 23 6 1.4747 -4.9950 5.3992 24 7 2.2171 -1.9287 2.5781 25 6 4.1991 -1.9774 -1.1463 26 6 4.1983 -0.4476 -1.1716 27 1 -0.4851 0.8401 -0.0004 28 1 4.2010 -0.1517 1.7282 29 1 5.2197 -1.5282 1.2427 30 1 4.9999 -3.4347 2.8888 31 1 -1.6404 -3.6412 5.4811 32 1 -1.9154 -5.3772 7.1994 33 1 2.1307 -6.6190 6.6168 34 1 2.4245 -4.8885 4.8961 35 1 5.1384 -2.4763 -0.9080 36 1 3.5617 -2.4933 -1.8644 37 1 3.5603 0.0432 -1.9066 38 1 5.1371 0.0600 -0.9500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000664114065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:17 Heat of formation + Delta-G solvation = 64.171362 kcal Electronic energy + Delta-G solvation = -25349.043294 eV Core-core repulsion = 21495.217083 eV Total energy + Delta-G solvation = -3853.826211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.00604 -44.17990 -40.83912 -39.03737 -38.85394 -34.94312 -34.15409 -32.47068 -32.26452 -31.95398 -28.87076 -27.63469 -25.93558 -24.06810 -23.73139 -23.31434 -22.80406 -21.19219 -20.82441 -18.98077 -18.73371 -18.06073 -17.49179 -17.43507 -17.07072 -16.69694 -16.62615 -16.29002 -15.75980 -15.65998 -15.14620 -15.04515 -14.82578 -14.63238 -14.38091 -14.18063 -14.03177 -13.90946 -13.21660 -13.07158 -12.81430 -12.55009 -12.09671 -12.05724 -11.91174 -11.74564 -11.34001 -11.15874 -10.99801 -10.82732 -10.69975 -10.33470 -10.22972 -10.15740 -9.82980 -8.18275 -6.22079 -0.64282 0.24894 0.63271 1.25446 1.32139 1.36388 1.45458 1.63280 2.13208 2.40074 2.63934 2.72374 3.13480 3.16734 3.20677 3.39499 3.70091 3.80012 3.91135 4.06451 4.11029 4.25304 4.27482 4.31754 4.35987 4.44843 4.67217 4.82066 4.89603 4.98521 5.01815 5.04845 5.08758 5.20905 5.23830 5.41296 5.50603 5.56491 5.70795 5.80842 6.05089 6.32009 6.35770 6.80226 7.34287 7.43693 8.99489 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003630 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.072005 B = 7710.827067 C = 8557.188508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.317 1.317 6 H -0.223 1.223 7 C -0.451 4.451 8 H 0.006 0.994 9 C -0.057 4.057 10 C 0.142 3.858 11 N -0.276 5.276 12 C 0.190 3.810 13 N -0.491 5.491 14 C 0.055 3.945 15 C 0.485 3.515 16 O -0.477 6.477 17 C -0.182 4.182 18 C -0.041 4.041 19 C -0.166 4.166 20 C 0.127 3.873 21 F -0.134 7.134 22 C -0.163 4.163 23 C -0.036 4.036 24 N -0.229 5.229 25 C -0.156 4.156 26 C -0.181 4.181 27 H 0.257 0.743 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.283 0.717 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.470 -9.678 11.344 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.245 1.245 6 H -0.146 1.146 7 C -0.489 4.489 8 H 0.025 0.975 9 C -0.059 4.059 10 C 0.022 3.978 11 N -0.072 5.072 12 C -0.103 4.103 13 N -0.218 5.218 14 C -0.219 4.219 15 C 0.362 3.638 16 O -0.350 6.350 17 C -0.183 4.183 18 C -0.059 4.059 19 C -0.184 4.184 20 C 0.108 3.892 21 F -0.113 7.113 22 C -0.182 4.182 23 C -0.054 4.054 24 N -0.070 5.070 25 C -0.193 4.193 26 C -0.219 4.219 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.177 0.823 30 H 0.298 0.702 31 H 0.156 0.844 32 H 0.183 0.817 33 H 0.188 0.812 34 H 0.202 0.798 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.352 -9.062 11.198 18.976 hybrid contribution -0.786 0.897 -0.424 1.266 sum 11.565 -8.165 10.774 17.791 Atomic orbital electron populations 1.70098 1.08957 1.27266 1.52528 1.25788 0.94900 1.02801 0.93795 0.85984 0.79774 0.78467 0.79376 1.18768 1.24518 1.14613 1.19942 0.88732 0.91413 1.48775 0.97527 1.19575 0.92936 1.05329 0.88046 1.22269 0.94740 0.93863 0.86902 1.47514 1.05211 1.23405 1.31086 1.27569 1.02756 0.88003 0.91960 1.70670 0.98258 1.27918 1.24942 1.24375 0.97410 0.97479 1.02616 1.19568 0.83539 0.81057 0.79610 1.90683 1.41527 1.45226 1.57576 1.20129 0.97284 1.00153 1.00768 1.21280 0.95970 0.96012 0.92647 1.21221 1.00287 0.96516 1.00415 1.18204 0.95301 0.87661 0.88059 1.91518 1.96226 1.61888 1.61639 1.21445 0.97393 1.01291 0.98032 1.22474 1.00107 0.89775 0.93074 1.74985 0.98352 1.22957 1.10755 1.23008 1.01752 0.93176 1.01375 1.23058 1.02101 0.95504 1.01191 0.93458 0.89617 0.82340 0.70205 0.84434 0.81700 0.81227 0.79825 0.85515 0.91822 0.91372 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.95 13.96 21.44 0.30 -62.65 16 2 C 0.02 1.43 5.47 84.66 0.46 1.89 16 3 Si 0.94 43.79 24.91 68.60 1.71 45.49 16 4 H -0.26 -11.44 6.91 99.48 0.69 -10.75 16 5 H -0.32 -15.82 7.11 99.48 0.71 -15.12 16 6 H -0.22 -8.69 5.68 99.48 0.56 -8.12 16 7 C -0.45 -24.93 7.10 25.60 0.18 -24.75 16 8 H 0.01 0.43 8.06 -2.91 -0.02 0.41 16 9 C -0.06 -2.21 1.26 -52.93 -0.07 -2.28 16 10 C 0.14 4.21 6.45 86.38 0.56 4.77 16 11 N -0.28 -9.65 3.34 -351.89 -1.18 -10.83 16 12 C 0.19 4.84 12.57 180.29 2.27 7.10 16 13 N -0.49 -15.57 8.09 -193.01 -1.56 -17.14 16 14 C 0.05 2.31 7.79 137.05 1.07 3.37 16 15 C 0.48 20.88 7.13 27.27 0.19 21.07 16 16 O -0.48 -24.83 17.10 -3.96 -0.07 -24.90 16 17 C -0.18 -5.93 5.88 -20.07 -0.12 -6.05 16 18 C -0.04 -1.15 9.59 22.53 0.22 -0.94 16 19 C -0.17 -3.66 10.01 22.27 0.22 -3.44 16 20 C 0.13 2.73 7.31 22.49 0.16 2.89 16 21 F -0.13 -2.76 17.26 44.97 0.78 -1.98 16 22 C -0.16 -3.38 10.01 22.27 0.22 -3.16 16 23 C -0.04 -0.95 9.38 22.53 0.21 -0.74 16 24 N -0.23 -10.77 9.88 -52.43 -0.52 -11.29 16 25 C -0.16 -4.88 9.88 30.60 0.30 -4.58 16 26 C -0.18 -5.91 7.57 30.60 0.23 -5.68 16 27 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 28 H 0.09 2.64 6.58 -2.39 -0.02 2.62 16 29 H 0.16 2.49 7.86 -2.39 -0.02 2.47 16 30 H 0.28 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.14 3.98 7.66 -2.91 -0.02 3.95 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.19 4.79 4.76 -2.91 -0.01 4.78 16 35 H 0.13 2.68 8.08 -2.39 -0.02 2.66 16 36 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.07 2.61 6.84 -2.39 -0.02 2.59 16 38 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -86.15 330.23 6.53 -79.62 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.95 Total: 14.17 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 6.12 Total: -10.51 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -2.95 Total: -101.90 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.71 Total: 45.49 kcal Total: -86.15 6.53 -79.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000664114065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.795 kcal (2) G-P(sol) polarization free energy of solvation -86.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds