Wall clock time and date at job start Fri Apr 10 2020 23:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 119.99671 * 2 1 4 4 H 1.48507 * 109.47217 * 270.00050 * 3 2 1 5 5 H 1.48501 * 109.47605 * 29.99962 * 3 2 1 6 6 H 1.48502 * 109.47330 * 150.00380 * 3 2 1 7 7 C 1.37872 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00231 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00127 * 84.17997 * 10 9 7 12 12 C 1.50706 * 109.46554 * 269.99685 * 11 10 9 13 13 C 1.38225 * 119.61709 * 94.98221 * 12 11 10 14 14 C 1.38630 * 119.15722 * 180.02562 * 13 12 11 15 15 C 1.38660 * 118.42412 * 359.97438 * 14 13 12 16 16 C 1.38187 * 119.16259 * 359.97438 * 15 14 13 17 17 N 1.31856 * 119.61538 * 274.99766 * 12 11 10 18 18 C 1.34776 * 120.00154 * 264.17231 * 10 9 7 19 19 O 1.21566 * 120.00336 * 175.27354 * 18 10 9 20 20 C 1.47728 * 119.99733 * 355.27539 * 18 10 9 21 21 C 1.40156 * 120.53278 * 49.04674 * 20 18 10 22 22 C 1.38149 * 118.32528 * 179.97438 * 21 20 18 23 23 C 1.38755 * 119.28220 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.49103 * 179.97438 * 23 22 21 25 25 N 1.32146 * 121.01611 * 359.97403 * 23 22 21 26 26 C 1.31685 * 121.84228 * 359.77222 * 25 23 22 27 27 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46642 * 60.00434 * 9 7 2 29 29 H 1.09001 * 109.47235 * 300.00490 * 9 7 2 30 30 H 1.09002 * 109.47022 * 149.99966 * 11 10 9 31 31 H 1.08995 * 109.47115 * 29.99220 * 11 10 9 32 32 H 1.07997 * 120.42049 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.78645 * 180.02562 * 14 13 12 34 34 H 1.08007 * 120.42264 * 180.02562 * 15 14 13 35 35 H 1.07998 * 119.61628 * 180.27659 * 16 15 14 36 36 H 1.07997 * 120.83535 * 359.95418 * 21 20 18 37 37 H 1.07996 * 120.36146 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.70355 * 180.27253 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.1223 -3.3090 -1.2620 12 6 2.8315 -4.0318 -1.5499 13 6 1.8842 -3.4401 -2.3642 14 6 0.7001 -4.1132 -2.6223 15 6 0.5125 -5.3620 -2.0495 16 6 1.5052 -5.8906 -1.2467 17 7 2.6189 -5.2211 -1.0218 18 6 4.3367 -3.1708 1.1612 19 8 4.6597 -4.3427 1.1720 20 6 4.3133 -2.3995 2.4209 21 6 3.1962 -1.6241 2.7605 22 6 3.2229 -0.9216 3.9497 23 6 4.3447 -1.0048 4.7621 24 9 4.3755 -0.3191 5.9258 25 7 5.3833 -1.7445 4.4152 26 6 5.4009 -2.4351 3.2940 27 1 -0.4850 0.8400 0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8905 30 1 4.9342 -4.0321 -1.1846 31 1 4.3348 -2.6091 -2.0701 32 1 2.0640 -2.4655 -2.7933 33 1 -0.0579 -3.6757 -3.2551 34 1 -0.3977 -5.9149 -2.2293 35 1 1.3686 -6.8646 -0.8005 36 1 2.3364 -1.5769 2.1087 37 1 2.3802 -0.3135 4.2435 38 1 6.2664 -3.0318 3.0466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733894154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:19 Heat of formation + Delta-G solvation = 9.490572 kcal Electronic energy + Delta-G solvation = -26148.199677 eV Core-core repulsion = 22292.002329 eV Total energy + Delta-G solvation = -3856.197348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.87119 -40.37997 -39.63989 -38.35331 -35.43544 -33.10005 -32.50081 -31.95128 -31.41150 -30.55951 -28.39627 -26.45692 -23.89476 -23.52901 -23.04922 -22.55421 -21.68367 -19.24983 -17.88908 -17.30822 -17.16626 -16.68231 -16.37812 -15.93993 -15.65918 -15.62315 -15.18333 -14.60110 -14.35957 -14.02324 -13.74017 -13.50110 -13.26332 -13.04938 -12.90519 -12.75372 -12.66782 -12.51393 -12.19396 -11.89776 -11.69682 -11.36232 -11.11057 -10.83720 -10.42764 -9.89560 -9.76054 -9.64109 -9.38432 -9.24601 -8.96841 -8.91647 -8.74376 -8.50580 -7.94894 -6.41628 -4.44751 0.87871 1.37678 1.54811 1.81095 3.03330 3.12548 3.13682 3.16200 3.53810 3.73165 3.87735 4.08933 4.39589 4.71580 4.73463 4.86325 4.95189 5.14866 5.20703 5.23352 5.25569 5.49191 5.56527 5.65054 5.78227 5.83534 5.92039 6.12093 6.21901 6.23731 6.29273 6.46315 6.50337 6.58510 6.66921 6.80957 7.09259 7.16288 7.24022 7.71531 7.89265 8.19939 8.52552 8.63208 8.71605 9.16308 10.68738 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.005954 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.220496 B = 4701.600989 C = 6221.747349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.084 3.916 3 Si 0.861 3.139 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.198 3.802 10 N -0.581 5.581 11 C 0.175 3.825 12 C 0.117 3.883 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.177 4.177 16 C 0.085 3.915 17 N -0.460 5.460 18 C 0.567 3.433 19 O -0.531 6.531 20 C -0.183 4.183 21 C -0.006 4.006 22 C -0.202 4.202 23 C 0.311 3.689 24 F -0.117 7.117 25 N -0.525 5.525 26 C 0.175 3.825 27 H 0.269 0.731 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.191 0.809 37 H 0.150 0.850 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -2.964 -2.101 5.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.121 4.121 3 Si 0.687 3.313 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.103 0.897 9 C 0.077 3.923 10 N -0.311 5.311 11 C 0.051 3.949 12 C -0.022 4.022 13 C -0.144 4.144 14 C -0.105 4.105 15 C -0.197 4.197 16 C -0.072 4.072 17 N -0.169 5.169 18 C 0.353 3.647 19 O -0.408 6.408 20 C -0.188 4.188 21 C -0.031 4.031 22 C -0.223 4.223 23 C 0.157 3.843 24 F -0.096 7.096 25 N -0.240 5.240 26 C 0.017 3.983 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.207 0.793 37 H 0.168 0.832 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.168 -3.794 -0.964 6.484 hybrid contribution -1.427 1.771 -0.770 2.401 sum 3.741 -2.024 -1.734 4.593 Atomic orbital electron populations 1.69882 1.06131 1.27455 1.47972 1.24846 0.94640 0.98642 0.93982 0.87073 0.80729 0.84272 0.79240 1.19703 1.20678 1.18697 1.21349 0.88810 0.95158 1.53045 0.89705 1.20082 0.96185 0.77919 0.98097 1.47770 1.63187 1.15260 1.04872 1.20129 0.93575 0.94828 0.86333 1.21490 0.96968 0.90900 0.92879 1.21929 0.93951 0.99977 0.98508 1.21476 0.96869 0.94108 0.98069 1.22037 1.00453 0.97192 1.00051 1.22603 0.89556 0.99320 0.95750 1.67533 1.21992 1.07803 1.19602 1.17872 0.77550 0.86200 0.83062 1.90791 1.48793 1.15030 1.86195 1.21037 0.97432 1.02228 0.98151 1.22925 0.99270 0.87017 0.93861 1.21876 0.99224 1.05000 0.96228 1.18422 0.91426 0.91491 0.82919 1.91596 1.96449 1.76151 1.45368 1.66986 1.27518 1.09870 1.19576 1.22485 0.97029 0.92555 0.86226 0.92110 0.94299 0.95030 0.89046 0.89192 0.84716 0.85424 0.85681 0.83664 0.79275 0.83184 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.75 13.96 55.43 0.77 -21.98 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 18.00 27.47 -169.99 -4.67 13.33 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 7 C -0.55 -12.37 6.61 -34.44 -0.23 -12.59 16 8 H 0.08 2.22 7.16 -52.48 -0.38 1.84 16 9 C 0.20 3.90 3.78 -5.20 -0.02 3.88 16 10 N -0.58 -10.93 2.45 -177.59 -0.44 -11.37 16 11 C 0.18 2.96 5.72 -5.19 -0.03 2.93 16 12 C 0.12 2.11 5.79 -82.58 -0.48 1.63 16 13 C -0.12 -2.10 8.57 -39.44 -0.34 -2.44 16 14 C -0.08 -1.24 10.17 -39.28 -0.40 -1.64 16 15 C -0.18 -2.61 10.11 -39.44 -0.40 -3.01 16 16 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 17 N -0.46 -8.72 10.27 -9.47 -0.10 -8.82 16 18 C 0.57 11.11 7.25 -12.38 -0.09 11.03 16 19 O -0.53 -11.45 16.66 5.31 0.09 -11.36 16 20 C -0.18 -3.33 4.92 -104.82 -0.52 -3.85 16 21 C -0.01 -0.11 7.68 -38.89 -0.30 -0.40 16 22 C -0.20 -3.32 10.07 -39.42 -0.40 -3.72 16 23 C 0.31 5.20 8.41 -17.23 -0.14 5.06 16 24 F -0.12 -1.86 17.29 2.25 0.04 -1.82 16 25 N -0.52 -9.04 10.36 -13.22 -0.14 -9.18 16 26 C 0.17 2.89 10.89 -17.14 -0.19 2.71 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.04 0.78 4.51 -51.93 -0.23 0.54 16 29 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 30 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 31 H 0.09 1.27 7.85 -51.93 -0.41 0.86 16 32 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 35 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.19 3.88 4.92 -52.49 -0.26 3.62 16 37 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.17 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -28.40 331.81 -7.01 -35.41 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.75 Total: 8.10 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.82 Total: 2.68 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.10 Total: -51.34 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.67 Total: 13.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.40 -7.01 -35.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733894154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.900 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds