Wall clock time and date at job start Fri Apr 10 2020 23:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 119.99671 * 2 1 4 4 H 1.48507 * 109.47217 * 270.00050 * 3 2 1 5 5 H 1.48501 * 109.47605 * 29.99962 * 3 2 1 6 6 H 1.48502 * 109.47330 * 150.00380 * 3 2 1 7 7 C 1.37872 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00231 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00127 * 84.17997 * 10 9 7 12 12 C 1.50706 * 109.46554 * 269.99685 * 11 10 9 13 13 C 1.38225 * 119.61709 * 94.98221 * 12 11 10 14 14 C 1.38630 * 119.15722 * 180.02562 * 13 12 11 15 15 C 1.38660 * 118.42412 * 359.97438 * 14 13 12 16 16 C 1.38187 * 119.16259 * 359.97438 * 15 14 13 17 17 N 1.31856 * 119.61538 * 274.99766 * 12 11 10 18 18 C 1.34776 * 120.00154 * 264.17231 * 10 9 7 19 19 O 1.21566 * 120.00336 * 175.27354 * 18 10 9 20 20 C 1.47728 * 119.99733 * 355.27539 * 18 10 9 21 21 C 1.40156 * 120.53278 * 49.04674 * 20 18 10 22 22 C 1.38149 * 118.32528 * 179.97438 * 21 20 18 23 23 C 1.38755 * 119.28220 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.49103 * 179.97438 * 23 22 21 25 25 N 1.32146 * 121.01611 * 359.97403 * 23 22 21 26 26 C 1.31685 * 121.84228 * 359.77222 * 25 23 22 27 27 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46642 * 60.00434 * 9 7 2 29 29 H 1.09001 * 109.47235 * 300.00490 * 9 7 2 30 30 H 1.09002 * 109.47022 * 149.99966 * 11 10 9 31 31 H 1.08995 * 109.47115 * 29.99220 * 11 10 9 32 32 H 1.07997 * 120.42049 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.78645 * 180.02562 * 14 13 12 34 34 H 1.08007 * 120.42264 * 180.02562 * 15 14 13 35 35 H 1.07998 * 119.61628 * 180.27659 * 16 15 14 36 36 H 1.07997 * 120.83535 * 359.95418 * 21 20 18 37 37 H 1.07996 * 120.36146 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.70355 * 180.27253 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.1223 -3.3090 -1.2620 12 6 2.8315 -4.0318 -1.5499 13 6 1.8842 -3.4401 -2.3642 14 6 0.7001 -4.1132 -2.6223 15 6 0.5125 -5.3620 -2.0495 16 6 1.5052 -5.8906 -1.2467 17 7 2.6189 -5.2211 -1.0218 18 6 4.3367 -3.1708 1.1612 19 8 4.6597 -4.3427 1.1720 20 6 4.3133 -2.3995 2.4209 21 6 3.1962 -1.6241 2.7605 22 6 3.2229 -0.9216 3.9497 23 6 4.3447 -1.0048 4.7621 24 9 4.3755 -0.3191 5.9258 25 7 5.3833 -1.7445 4.4152 26 6 5.4009 -2.4351 3.2940 27 1 -0.4850 0.8400 0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8905 30 1 4.9342 -4.0321 -1.1846 31 1 4.3348 -2.6091 -2.0701 32 1 2.0640 -2.4655 -2.7933 33 1 -0.0579 -3.6757 -3.2551 34 1 -0.3977 -5.9149 -2.2293 35 1 1.3686 -6.8646 -0.8005 36 1 2.3364 -1.5769 2.1087 37 1 2.3802 -0.3135 4.2435 38 1 6.2664 -3.0318 3.0466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733894154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:18 Heat of formation + Delta-G solvation = -7.106496 kcal Electronic energy + Delta-G solvation = -26148.919379 eV Core-core repulsion = 22292.002329 eV Total energy + Delta-G solvation = -3856.917051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.17497 -41.80178 -40.93636 -39.79857 -37.00384 -34.71091 -34.02498 -33.25324 -32.76033 -31.91368 -30.05037 -27.84105 -25.30442 -24.91605 -24.43234 -24.10573 -22.99382 -20.70454 -19.29098 -19.00250 -18.55237 -18.16114 -17.68385 -17.31846 -17.07298 -16.94498 -16.51473 -16.20592 -15.67687 -15.43176 -15.22587 -14.91235 -14.71437 -14.45337 -14.33327 -14.17194 -14.02415 -13.85591 -13.69313 -13.41325 -13.19355 -12.72325 -12.63402 -12.34958 -12.03541 -11.66927 -11.25481 -11.06454 -10.74567 -10.72302 -10.62014 -10.29108 -10.12123 -9.81770 -9.46624 -8.25244 -6.30144 -0.49378 0.00323 0.27809 0.53411 1.38849 1.46072 1.49749 1.64448 2.12123 2.34974 2.39183 2.49051 3.05798 3.09190 3.38187 3.48211 3.54860 3.80012 3.86086 3.95127 4.09415 4.21272 4.32869 4.36770 4.53213 4.56646 4.60050 4.70939 4.86134 4.86183 4.91408 4.98275 5.05770 5.32670 5.40619 5.42810 5.45097 5.63011 5.92702 6.19093 6.37760 6.53621 6.77047 7.15638 7.23629 7.34486 8.88307 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.005954 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.220496 B = 4701.600989 C = 6221.747349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.043 3.957 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.204 3.796 10 N -0.579 5.579 11 C 0.170 3.830 12 C 0.099 3.901 13 C -0.136 4.136 14 C -0.089 4.089 15 C -0.170 4.170 16 C 0.071 3.929 17 N -0.494 5.494 18 C 0.565 3.435 19 O -0.555 6.555 20 C -0.194 4.194 21 C -0.014 4.014 22 C -0.195 4.195 23 C 0.313 3.687 24 F -0.110 7.110 25 N -0.531 5.531 26 C 0.185 3.815 27 H 0.267 0.733 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -2.379 -2.094 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.170 1.170 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.083 3.917 10 N -0.309 5.309 11 C 0.047 3.953 12 C -0.040 4.040 13 C -0.156 4.156 14 C -0.115 4.115 15 C -0.190 4.190 16 C -0.087 4.087 17 N -0.204 5.204 18 C 0.352 3.648 19 O -0.435 6.435 20 C -0.200 4.200 21 C -0.039 4.039 22 C -0.216 4.216 23 C 0.160 3.840 24 F -0.089 7.089 25 N -0.246 5.246 26 C 0.027 3.973 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.968 -3.208 -0.967 6.845 hybrid contribution -1.726 1.480 -0.746 2.392 sum 4.243 -1.729 -1.713 4.891 Atomic orbital electron populations 1.70008 1.07842 1.28029 1.50506 1.25413 0.94985 1.01498 0.93915 0.86220 0.80059 0.80419 0.79504 1.19056 1.21543 1.16963 1.21247 0.90133 0.93313 1.51329 0.93727 1.19970 0.94103 0.78702 0.98972 1.47796 1.62575 1.15021 1.05478 1.20346 0.93316 0.95327 0.86288 1.21619 0.97633 0.91140 0.93572 1.22038 0.94582 1.00224 0.98789 1.21844 0.96841 0.94555 0.98244 1.22393 1.01147 0.96864 0.98559 1.23095 0.89329 1.00180 0.96056 1.67517 1.23581 1.08605 1.20692 1.18102 0.77077 0.85990 0.83629 1.90770 1.50097 1.16005 1.86594 1.21006 0.98172 1.02700 0.98092 1.22637 0.98629 0.88143 0.94501 1.21972 0.99777 1.04524 0.95309 1.18471 0.91295 0.91205 0.82998 1.91615 1.96399 1.75925 1.44950 1.67058 1.27747 1.10088 1.19688 1.22757 0.97079 0.92008 0.85423 0.92356 0.93840 0.93201 0.89232 0.86513 0.84621 0.83411 0.82230 0.81472 0.81588 0.81238 0.79166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.62 13.96 21.45 0.30 -48.32 16 2 C 0.04 2.03 5.47 84.65 0.46 2.50 16 3 Si 0.91 36.08 27.47 68.60 1.88 37.97 16 4 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.25 -8.99 6.54 99.48 0.65 -8.34 16 7 C -0.52 -23.68 6.61 25.60 0.17 -23.51 16 8 H 0.04 2.39 7.16 -2.91 -0.02 2.37 16 9 C 0.20 7.79 3.78 85.63 0.32 8.11 16 10 N -0.58 -21.52 2.45 -834.05 -2.05 -23.56 16 11 C 0.17 5.70 5.72 85.63 0.49 6.19 16 12 C 0.10 3.59 5.79 42.55 0.25 3.84 16 13 C -0.14 -4.62 8.57 22.36 0.19 -4.43 16 14 C -0.09 -2.71 10.17 22.46 0.23 -2.48 16 15 C -0.17 -4.78 10.11 22.36 0.23 -4.55 16 16 C 0.07 2.25 11.18 84.67 0.95 3.20 16 17 N -0.49 -18.85 10.27 -183.88 -1.89 -20.74 16 18 C 0.56 21.97 7.25 86.75 0.63 22.60 16 19 O -0.56 -23.98 16.66 -3.92 -0.07 -24.04 16 20 C -0.19 -6.89 4.92 -20.00 -0.10 -6.99 16 21 C -0.01 -0.49 7.68 22.71 0.17 -0.32 16 22 C -0.19 -6.09 10.07 22.37 0.23 -5.87 16 23 C 0.31 9.84 8.41 84.77 0.71 10.55 16 24 F -0.11 -3.25 17.29 44.97 0.78 -2.47 16 25 N -0.53 -17.18 10.36 -195.73 -2.03 -19.21 16 26 C 0.18 5.81 10.89 85.02 0.93 6.73 16 27 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 28 H 0.04 1.66 4.51 -2.39 -0.01 1.65 16 29 H 0.05 1.75 7.40 -2.39 -0.02 1.74 16 30 H 0.09 3.00 7.49 -2.39 -0.02 2.99 16 31 H 0.12 3.16 7.85 -2.39 -0.02 3.14 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.17 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.17 6.86 4.92 -2.91 -0.01 6.85 16 37 H 0.17 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.19 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -60.90 331.81 3.84 -57.06 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 1.05 Total: 27.75 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.85 Total: 15.57 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -5.66 Total: -111.83 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 1.88 Total: 37.97 kcal Total: -60.90 3.84 -57.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733894154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.957 kcal (2) G-P(sol) polarization free energy of solvation -60.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds