Wall clock time and date at job start Fri Apr 10 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47261 * 274.99716 * 3 2 1 5 5 H 1.48494 * 109.47377 * 34.99791 * 3 2 1 6 6 H 1.48503 * 109.47017 * 154.99999 * 3 2 1 7 7 C 1.38984 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00299 * 185.01980 * 7 2 1 9 9 N 1.37326 * 120.00091 * 5.03343 * 7 2 1 10 10 C 1.36489 * 126.07124 * 174.97418 * 9 7 2 11 11 C 1.35680 * 107.50948 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08574 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99990 * 180.02562 * 12 11 10 14 14 O 1.21298 * 120.00277 * 5.17775 * 13 12 11 15 15 C 1.50707 * 119.99592 * 185.17552 * 13 12 11 16 16 C 1.50703 * 115.54908 * 65.07214 * 15 13 12 17 17 C 1.38267 * 119.98623 * 29.47943 * 16 15 13 18 18 C 1.38226 * 120.04913 * 179.72259 * 17 16 15 19 19 C 1.38217 * 120.02658 * 0.30259 * 18 17 16 20 20 C 1.38444 * 119.97353 * 359.97251 * 19 18 17 21 21 F 1.35096 * 120.02702 * 180.02562 * 20 19 18 22 22 C 1.38177 * 119.98537 * 209.75966 * 16 15 13 23 23 C 1.53004 * 117.49800 * 210.73620 * 15 13 12 24 24 C 1.52995 * 117.49925 * 279.40022 * 15 13 12 25 25 C 1.40652 * 107.83172 * 0.26224 * 11 10 9 26 26 N 1.30903 * 108.39282 * 359.55406 * 25 11 10 27 27 H 0.97003 * 119.99922 * 0.02562 * 1 2 3 28 28 H 1.07995 * 126.24677 * 0.03653 * 10 9 7 29 29 H 0.97000 * 119.99864 * 0.02562 * 12 11 10 30 30 H 1.07998 * 119.97781 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.98524 * 180.27623 * 18 17 16 32 32 H 1.07996 * 120.01739 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.01309 * 359.97438 * 22 16 15 34 34 H 1.08995 * 117.49827 * 215.00539 * 23 15 13 35 35 H 1.09001 * 117.49576 * 0.02787 * 23 15 13 36 36 H 1.08998 * 117.50277 * 359.97438 * 24 15 13 37 37 H 1.09002 * 117.49946 * 144.97910 * 24 15 13 38 38 H 1.08008 * 125.80424 * 179.69996 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3888 2.1074 -1.3948 5 1 1.5012 2.6199 0.8030 6 1 3.5933 1.4120 0.5917 7 6 2.0079 -1.2036 0.0005 8 1 3.0848 -1.2054 0.0824 9 7 1.3252 -2.3907 -0.1033 10 6 1.8830 -3.6317 -0.2118 11 6 0.8689 -4.5295 -0.2909 12 7 1.0048 -5.9236 -0.4126 13 6 -0.0918 -6.7040 -0.4820 14 8 -1.1934 -6.1989 -0.5342 15 6 0.0507 -8.2043 -0.4947 16 6 0.6158 -8.8141 0.7622 17 6 0.4079 -8.1988 1.9828 18 6 0.9208 -8.7601 3.1372 19 6 1.6474 -9.9340 3.0718 20 6 1.8609 -10.5480 1.8494 21 9 2.5705 -11.6958 1.7843 22 6 1.3463 -9.9850 0.6936 23 6 -1.0050 -9.0077 -1.2569 24 6 0.4095 -8.8685 -1.8254 25 6 -0.3425 -3.8170 -0.2351 26 7 -0.0672 -2.5427 -0.1171 27 1 -0.4850 0.8401 -0.0004 28 1 2.9389 -3.8577 -0.2311 29 1 1.8877 -6.3237 -0.4465 30 1 -0.1597 -7.2814 2.0350 31 1 0.7540 -8.2809 4.0905 32 1 2.0483 -10.3722 3.9737 33 1 1.5120 -10.4633 -0.2604 34 1 -1.2907 -9.9774 -0.8493 35 1 -1.8023 -8.4511 -1.7495 36 1 0.5421 -8.2206 -2.6918 37 1 1.0546 -9.7465 -1.7918 38 1 -1.3318 -4.2482 -0.2794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734432477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:21 Heat of formation + Delta-G solvation = 59.239977 kcal Electronic energy + Delta-G solvation = -24966.935607 eV Core-core repulsion = 21112.895555 eV Total energy + Delta-G solvation = -3854.040052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.07680 -40.56868 -39.52055 -38.37458 -36.35240 -34.21687 -33.13661 -30.94544 -30.68465 -30.24374 -27.93377 -25.47490 -24.42133 -23.04195 -22.53362 -22.10651 -20.91981 -19.69208 -19.32518 -18.07874 -17.32222 -16.64070 -16.28208 -16.06794 -15.76816 -15.48042 -15.30145 -15.09101 -14.56856 -14.15850 -13.93286 -13.72365 -13.35315 -13.07028 -12.93311 -12.72943 -12.70638 -11.91311 -11.82406 -11.69392 -11.44487 -11.34010 -11.28722 -10.96476 -10.84372 -10.67696 -10.53418 -10.16270 -9.25399 -9.18145 -9.09850 -8.82339 -8.75699 -8.07536 -6.71524 -6.57384 -4.24275 0.93067 1.00328 2.69565 2.98697 3.04299 3.09658 3.24719 3.43415 3.63651 3.80391 3.86339 4.02148 4.29494 4.38765 4.51223 4.63835 4.74289 4.77741 4.95145 5.00404 5.01769 5.12199 5.18094 5.44278 5.45930 5.69827 5.75304 5.87551 5.89640 5.99766 6.16550 6.23415 6.31029 6.45288 6.68858 6.89274 6.93969 7.10286 7.22485 7.84681 8.15855 8.26665 8.61039 8.82805 9.36445 9.65334 10.38812 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002978 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.018777 B = 9399.466688 C =10049.263195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.082 4.082 11 C -0.060 4.060 12 N -0.615 5.615 13 C 0.538 3.462 14 O -0.529 6.529 15 C -0.121 4.121 16 C -0.010 4.010 17 C -0.112 4.112 18 C -0.084 4.084 19 C -0.157 4.157 20 C 0.098 3.902 21 F -0.142 7.142 22 C -0.153 4.153 23 C -0.130 4.130 24 C -0.159 4.159 25 C -0.033 4.033 26 N -0.260 5.260 27 H 0.275 0.725 28 H 0.145 0.855 29 H 0.398 0.602 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -18.079 1.682 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.233 4.233 11 C -0.166 4.166 12 N -0.256 5.256 13 C 0.323 3.677 14 O -0.405 6.405 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.176 4.176 20 C 0.079 3.921 21 F -0.120 7.120 22 C -0.172 4.172 23 C -0.167 4.167 24 C -0.196 4.196 25 C -0.209 4.209 26 N -0.091 5.091 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.231 0.769 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.638 -16.404 1.778 16.709 hybrid contribution 1.504 -0.559 -0.016 1.604 sum 4.141 -16.962 1.762 17.549 Atomic orbital electron populations 1.70221 1.06143 1.27976 1.35250 1.25638 0.95690 1.00263 0.95460 0.85816 0.79457 0.80048 0.78859 1.19644 1.20092 1.18777 1.19883 0.92011 0.80654 1.53066 0.86615 1.44549 1.03996 1.03589 1.38842 1.21257 0.96832 0.85664 1.19517 1.17269 0.94306 0.81498 1.23493 1.42419 1.08160 1.04870 1.70153 1.18938 0.84486 0.85893 0.78405 1.90613 1.25968 1.74142 1.49801 1.20151 1.07767 0.92363 0.92156 1.18604 0.95952 0.93650 0.92807 1.21201 0.99765 1.00550 0.91529 1.21029 0.95817 0.94350 0.98959 1.21162 1.02276 0.97479 0.96699 1.17582 0.95844 0.84142 0.94572 1.91493 1.76176 1.47125 1.97238 1.20947 1.00859 0.97405 0.97960 1.23079 0.92673 1.00442 1.00548 1.23234 0.99228 1.02485 0.94636 1.24083 0.97921 0.90914 1.07976 1.78253 0.90263 1.15061 1.25560 0.91470 0.83735 0.76915 0.84935 0.84686 0.84790 0.84455 0.87817 0.87029 0.87552 0.87595 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.40 11.83 55.49 0.66 -20.74 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.83 29.55 -169.99 -5.02 13.81 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.32 -8.53 10.24 -14.81 -0.15 -8.68 16 8 H 0.12 2.73 7.84 -52.48 -0.41 2.31 16 9 N -0.14 -3.87 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 12 N -0.61 -10.83 5.46 -10.00 -0.05 -10.89 16 13 C 0.54 9.22 5.86 -10.98 -0.06 9.15 16 14 O -0.53 -11.10 13.86 5.54 0.08 -11.02 16 15 C -0.12 -1.51 2.37 -156.81 -0.37 -1.89 16 16 C -0.01 -0.11 5.49 -104.63 -0.57 -0.69 16 17 C -0.11 -1.39 9.32 -39.58 -0.37 -1.76 16 18 C -0.08 -0.87 10.04 -39.59 -0.40 -1.27 16 19 C -0.16 -1.55 10.03 -39.51 -0.40 -1.94 16 20 C 0.10 1.04 7.30 -39.42 -0.29 0.75 16 21 F -0.14 -1.55 17.27 2.25 0.04 -1.52 16 22 C -0.15 -1.58 9.33 -39.51 -0.37 -1.94 16 23 C -0.13 -1.40 9.73 -26.69 -0.26 -1.66 16 24 C -0.16 -1.54 9.57 -26.69 -0.26 -1.80 16 25 C -0.03 -0.87 10.85 -17.04 -0.18 -1.05 16 26 N -0.26 -7.52 10.41 30.80 0.32 -7.20 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 29 H 0.40 5.73 8.83 -40.82 -0.36 5.37 16 30 H 0.13 1.89 7.32 -52.49 -0.38 1.50 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 1.15 5.95 -52.49 -0.31 0.84 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 1.32 7.99 -51.93 -0.41 0.91 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 0.79 6.11 -51.93 -0.32 0.47 16 38 H 0.17 4.49 5.94 -52.48 -0.31 4.18 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -32.53 336.21 -7.27 -39.80 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -3.76 Total: 12.34 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -4.54 Total: -15.72 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.88 Total: -42.75 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.53 -7.27 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734432477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.036 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds