Wall clock time and date at job start Fri Apr 10 2020 23:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47261 * 274.99716 * 3 2 1 5 5 H 1.48494 * 109.47377 * 34.99791 * 3 2 1 6 6 H 1.48503 * 109.47017 * 154.99999 * 3 2 1 7 7 C 1.38984 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00299 * 185.01980 * 7 2 1 9 9 N 1.37326 * 120.00091 * 5.03343 * 7 2 1 10 10 C 1.36489 * 126.07124 * 174.97418 * 9 7 2 11 11 C 1.35680 * 107.50948 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08574 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99990 * 180.02562 * 12 11 10 14 14 O 1.21298 * 120.00277 * 5.17775 * 13 12 11 15 15 C 1.50707 * 119.99592 * 185.17552 * 13 12 11 16 16 C 1.50703 * 115.54908 * 65.07214 * 15 13 12 17 17 C 1.38267 * 119.98623 * 29.47943 * 16 15 13 18 18 C 1.38226 * 120.04913 * 179.72259 * 17 16 15 19 19 C 1.38217 * 120.02658 * 0.30259 * 18 17 16 20 20 C 1.38444 * 119.97353 * 359.97251 * 19 18 17 21 21 F 1.35096 * 120.02702 * 180.02562 * 20 19 18 22 22 C 1.38177 * 119.98537 * 209.75966 * 16 15 13 23 23 C 1.53004 * 117.49800 * 210.73620 * 15 13 12 24 24 C 1.52995 * 117.49925 * 279.40022 * 15 13 12 25 25 C 1.40652 * 107.83172 * 0.26224 * 11 10 9 26 26 N 1.30903 * 108.39282 * 359.55406 * 25 11 10 27 27 H 0.97003 * 119.99922 * 0.02562 * 1 2 3 28 28 H 1.07995 * 126.24677 * 0.03653 * 10 9 7 29 29 H 0.97000 * 119.99864 * 0.02562 * 12 11 10 30 30 H 1.07998 * 119.97781 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.98524 * 180.27623 * 18 17 16 32 32 H 1.07996 * 120.01739 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.01309 * 359.97438 * 22 16 15 34 34 H 1.08995 * 117.49827 * 215.00539 * 23 15 13 35 35 H 1.09001 * 117.49576 * 0.02787 * 23 15 13 36 36 H 1.08998 * 117.50277 * 359.97438 * 24 15 13 37 37 H 1.09002 * 117.49946 * 144.97910 * 24 15 13 38 38 H 1.08008 * 125.80424 * 179.69996 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3888 2.1074 -1.3948 5 1 1.5012 2.6199 0.8030 6 1 3.5933 1.4120 0.5917 7 6 2.0079 -1.2036 0.0005 8 1 3.0848 -1.2054 0.0824 9 7 1.3252 -2.3907 -0.1033 10 6 1.8830 -3.6317 -0.2118 11 6 0.8689 -4.5295 -0.2909 12 7 1.0048 -5.9236 -0.4126 13 6 -0.0918 -6.7040 -0.4820 14 8 -1.1934 -6.1989 -0.5342 15 6 0.0507 -8.2043 -0.4947 16 6 0.6158 -8.8141 0.7622 17 6 0.4079 -8.1988 1.9828 18 6 0.9208 -8.7601 3.1372 19 6 1.6474 -9.9340 3.0718 20 6 1.8609 -10.5480 1.8494 21 9 2.5705 -11.6958 1.7843 22 6 1.3463 -9.9850 0.6936 23 6 -1.0050 -9.0077 -1.2569 24 6 0.4095 -8.8685 -1.8254 25 6 -0.3425 -3.8170 -0.2351 26 7 -0.0672 -2.5427 -0.1171 27 1 -0.4850 0.8401 -0.0004 28 1 2.9389 -3.8577 -0.2311 29 1 1.8877 -6.3237 -0.4465 30 1 -0.1597 -7.2814 2.0350 31 1 0.7540 -8.2809 4.0905 32 1 2.0483 -10.3722 3.9737 33 1 1.5120 -10.4633 -0.2604 34 1 -1.2907 -9.9774 -0.8493 35 1 -1.8023 -8.4511 -1.7495 36 1 0.5421 -8.2206 -2.6918 37 1 1.0546 -9.7465 -1.7918 38 1 -1.3318 -4.2482 -0.2794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734432477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:20 Heat of formation + Delta-G solvation = 39.639450 kcal Electronic energy + Delta-G solvation = -24967.785550 eV Core-core repulsion = 21112.895555 eV Total energy + Delta-G solvation = -3854.889995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88869 -41.93179 -41.09723 -39.61211 -37.39226 -35.92696 -34.94737 -32.25687 -31.75909 -31.51875 -29.74853 -27.13232 -25.74461 -23.88145 -23.64113 -22.99177 -22.79695 -21.34818 -20.76977 -19.40226 -18.82198 -17.64591 -17.42313 -17.13101 -17.05791 -16.88006 -16.57833 -16.22496 -15.91840 -15.56530 -15.29451 -14.96954 -14.84573 -14.65936 -14.17934 -13.77356 -13.59476 -13.48521 -13.31891 -12.97231 -12.85159 -12.79012 -12.58555 -12.14931 -12.07056 -11.88373 -11.72697 -11.56343 -11.03108 -10.84895 -10.67232 -10.11064 -9.91426 -9.62537 -8.54549 -8.47907 -6.25050 0.09338 0.18818 1.17208 1.39831 1.46138 1.58068 1.83502 2.00414 2.23710 2.39365 2.49433 2.86977 2.91353 3.07691 3.17516 3.42828 3.67491 3.74755 3.91529 4.00689 4.10832 4.17761 4.38006 4.42249 4.53644 4.62162 4.69217 4.91007 4.93703 4.99839 5.02501 5.06976 5.10788 5.18637 5.28387 5.31524 5.44960 5.47683 5.87297 5.95198 6.29901 6.71129 6.72732 7.34278 7.45573 7.66873 8.51678 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002978 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.018777 B = 9399.466688 C =10049.263195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.242 1.242 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.167 5.167 10 C -0.079 4.079 11 C -0.043 4.043 12 N -0.608 5.608 13 C 0.540 3.460 14 O -0.572 6.572 15 C -0.134 4.134 16 C -0.013 4.013 17 C -0.135 4.135 18 C -0.084 4.084 19 C -0.153 4.153 20 C 0.093 3.907 21 F -0.142 7.142 22 C -0.144 4.144 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.059 4.059 26 N -0.309 5.309 27 H 0.276 0.724 28 H 0.186 0.814 29 H 0.417 0.583 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -20.191 1.571 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.165 1.165 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.064 4.936 10 C -0.230 4.230 11 C -0.149 4.149 12 N -0.251 5.251 13 C 0.327 3.673 14 O -0.451 6.451 15 C -0.137 4.137 16 C -0.013 4.013 17 C -0.153 4.153 18 C -0.102 4.102 19 C -0.171 4.171 20 C 0.074 3.926 21 F -0.121 7.121 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.234 4.234 26 N -0.142 5.142 27 H 0.086 0.914 28 H 0.203 0.797 29 H 0.253 0.747 30 H 0.121 0.879 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.158 0.842 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.512 -18.579 1.665 19.451 hybrid contribution 0.583 -0.082 0.036 0.589 sum 6.094 -18.661 1.701 19.705 Atomic orbital electron populations 1.70401 1.08446 1.29104 1.37250 1.26878 0.96454 1.04320 0.94098 0.84576 0.78537 0.74158 0.78926 1.19181 1.20144 1.16537 1.20628 0.93287 0.80991 1.53672 0.84199 1.44835 1.03567 1.05059 1.40116 1.21963 0.98725 0.84515 1.17754 1.17326 0.92814 0.83850 1.20940 1.42384 1.09622 1.02803 1.70328 1.19802 0.83404 0.87964 0.76129 1.90594 1.27707 1.75603 1.51234 1.19937 1.10557 0.88789 0.94406 1.18470 0.96660 0.94378 0.91795 1.21121 1.00889 1.00236 0.93050 1.21170 0.95483 0.94613 0.98908 1.21398 1.01354 0.96815 0.97542 1.17711 0.95828 0.84147 0.94953 1.91499 1.76176 1.47133 1.97254 1.21051 0.99641 0.96484 0.99024 1.23191 0.92828 1.00725 1.00046 1.23417 0.98564 1.02614 0.92255 1.24113 0.98874 0.91086 1.09348 1.78147 0.92156 1.16523 1.27324 0.91390 0.79702 0.74695 0.87932 0.83268 0.82574 0.82025 0.85470 0.88798 0.87733 0.84155 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.73 11.83 21.66 0.26 -47.48 16 2 C -0.01 -0.30 5.50 84.95 0.47 0.16 16 3 Si 1.02 38.58 29.55 68.60 2.03 40.61 16 4 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.35 -18.82 10.24 84.01 0.86 -17.96 16 8 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 9 N -0.17 -9.29 3.74 -190.02 -0.71 -10.00 16 10 C -0.08 -3.68 11.49 83.38 0.96 -2.72 16 11 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 12 N -0.61 -21.22 5.46 -303.93 -1.66 -22.88 16 13 C 0.54 18.66 5.86 87.66 0.51 19.17 16 14 O -0.57 -25.18 13.86 -3.09 -0.04 -25.22 16 15 C -0.13 -3.15 2.37 -53.67 -0.13 -3.28 16 16 C -0.01 -0.27 5.49 -19.87 -0.11 -0.38 16 17 C -0.13 -3.28 9.32 22.27 0.21 -3.07 16 18 C -0.08 -1.62 10.04 22.26 0.22 -1.40 16 19 C -0.15 -2.58 10.03 22.31 0.22 -2.36 16 20 C 0.09 1.67 7.30 22.38 0.16 1.83 16 21 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 22 C -0.14 -2.46 9.33 22.31 0.21 -2.25 16 23 C -0.13 -2.58 9.73 30.62 0.30 -2.28 16 24 C -0.13 -2.14 9.57 30.62 0.29 -1.84 16 25 C -0.06 -3.24 10.85 85.42 0.93 -2.31 16 26 N -0.31 -18.77 10.41 -56.46 -0.59 -19.36 16 27 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.19 6.81 8.06 -2.91 -0.02 6.78 16 29 H 0.42 11.29 8.83 -92.71 -0.82 10.47 16 30 H 0.10 3.09 7.32 -2.91 -0.02 3.07 16 31 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.16 1.90 5.95 -2.91 -0.02 1.88 16 34 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.21 7.99 -2.39 -0.02 2.19 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.14 1.34 6.11 -2.39 -0.01 1.33 16 38 H 0.17 9.16 5.94 -2.91 -0.02 9.14 16 Total: -1.00 -75.57 336.21 5.74 -69.83 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.31 Total: 36.78 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.37 Total: -20.42 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -2.70 Total: -99.72 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -75.57 5.74 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734432477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.469 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds