Wall clock time and date at job start Fri Apr 10 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47004 * 299.99935 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99594 * 3 2 1 7 7 C 1.39885 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00245 * 175.55663 * 7 2 1 9 9 C 1.41169 * 119.99860 * 355.56107 * 7 2 1 10 10 C 1.40863 * 120.16039 * 214.77960 * 9 7 2 11 11 C 1.36374 * 119.82572 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16974 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83690 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99699 * 35.29799 * 13 12 11 15 15 O 1.21575 * 119.99975 * 355.71275 * 14 13 12 16 16 N 1.34775 * 119.99900 * 175.71096 * 14 13 12 17 17 C 1.46493 * 120.00165 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47477 * 180.02562 * 17 16 14 19 19 C 1.38144 * 119.60106 * 94.72311 * 18 17 16 20 20 C 1.38708 * 119.22053 * 179.77328 * 19 18 17 21 21 C 1.38546 * 118.45029 * 0.49831 * 20 19 18 22 22 C 1.38525 * 119.13851 * 359.74498 * 21 20 19 23 23 F 1.35106 * 119.64650 * 179.97438 * 22 21 20 24 24 N 1.31906 * 119.59568 * 275.00077 * 18 17 16 25 25 C 1.39481 * 120.33008 * 0.25887 * 12 11 10 26 26 C 1.36377 * 120.16818 * 359.43708 * 25 12 11 27 27 H 0.97000 * 120.00121 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.09088 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.91877 * 180.02562 * 11 10 9 30 30 H 0.97003 * 120.00239 * 215.30110 * 13 12 11 31 31 H 0.97008 * 119.99926 * 359.97438 * 16 14 13 32 32 H 1.09004 * 109.47144 * 300.00451 * 17 16 14 33 33 H 1.09005 * 109.47055 * 59.99828 * 17 16 14 34 34 H 1.08001 * 120.38799 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.77429 * 180.24692 * 20 19 18 36 36 H 1.08002 * 120.43063 * 179.77342 * 21 20 19 37 37 H 1.08001 * 119.91099 * 179.70004 * 25 12 11 38 38 H 1.07999 * 120.08414 * 180.26225 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2114 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8649 -3.5178 0.7976 11 6 1.1804 -4.6941 0.8848 12 6 -0.0701 -4.8239 0.2808 13 7 -0.7627 -6.0282 0.3737 14 6 -0.6811 -6.7675 1.4978 15 8 0.0577 -6.4228 2.3997 16 7 -1.4185 -7.8887 1.6219 17 6 -1.3303 -8.6920 2.8438 18 6 -2.2466 -9.8830 2.7294 19 6 -1.7442 -11.0902 2.2840 20 6 -2.5936 -12.1825 2.1863 21 6 -3.9249 -12.0163 2.5318 22 6 -4.3592 -10.7744 2.9655 23 9 -5.6555 -10.6007 3.3046 24 7 -3.5199 -9.7585 3.0506 25 6 -0.6277 -3.7551 -0.4209 26 6 0.0421 -2.5706 -0.5114 27 1 -0.4850 0.8400 -0.0004 28 1 2.8333 -3.4190 1.2654 29 1 1.6077 -5.5273 1.4229 30 1 -1.3040 -6.3352 -0.3705 31 1 -2.0083 -8.1635 0.9024 32 1 -0.3046 -9.0349 2.9799 33 1 -1.6271 -8.0855 3.6995 34 1 -0.7014 -11.1836 2.0189 35 1 -2.2266 -13.1391 1.8449 36 1 -4.6151 -12.8443 2.4643 37 1 -1.5943 -3.8646 -0.8900 38 1 -0.3928 -1.7426 -1.0515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748518649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:23 Heat of formation + Delta-G solvation = -5.096978 kcal Electronic energy + Delta-G solvation = -23927.237027 eV Core-core repulsion = 20070.407115 eV Total energy + Delta-G solvation = -3856.829912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.37991 -40.75186 -39.77923 -37.44378 -35.11157 -34.28282 -33.17211 -32.85790 -31.49932 -29.53125 -28.82046 -26.99858 -24.72040 -23.95052 -22.83949 -21.58355 -20.85754 -20.11812 -18.46736 -17.99688 -17.42568 -17.21069 -16.66690 -16.61232 -16.40143 -15.30709 -15.16172 -14.92968 -14.59672 -14.22167 -13.90177 -13.75560 -13.51421 -13.28539 -13.12329 -12.66133 -12.65267 -12.47438 -12.06644 -11.65859 -11.31664 -11.12859 -10.93814 -10.69542 -10.56130 -10.15640 -10.06830 -9.59061 -9.43381 -9.41100 -9.19907 -8.99353 -8.83564 -7.48951 -6.78887 -6.56332 -4.28640 0.32632 0.59271 2.67545 2.80966 3.03158 3.12466 3.13233 3.17721 3.19863 3.32969 3.70928 3.90152 4.02508 4.13591 4.39817 4.47655 4.64147 4.75921 4.87570 5.15273 5.21016 5.44936 5.53673 5.61238 5.70170 6.08924 6.24129 6.41646 6.51603 6.80677 6.83084 7.09027 7.18107 7.19880 7.30873 7.43751 7.70364 7.89892 8.01245 8.14481 8.35840 8.47632 8.69333 8.95812 8.98676 9.11150 10.34986 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.002127 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.665286 B =13162.640377 C =13535.653402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.086 4.086 12 C 0.024 3.976 13 N -0.666 5.666 14 C 0.698 3.302 15 O -0.575 6.575 16 N -0.747 5.747 17 C 0.192 3.808 18 C 0.150 3.850 19 C -0.163 4.163 20 C -0.047 4.047 21 C -0.191 4.191 22 C 0.308 3.692 23 F -0.111 7.111 24 N -0.498 5.498 25 C -0.123 4.123 26 C -0.140 4.140 27 H 0.276 0.724 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 -22.810 0.982 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.311 5.311 14 C 0.399 3.601 15 O -0.452 6.452 16 N -0.405 5.405 17 C 0.067 3.933 18 C 0.012 3.988 19 C -0.184 4.184 20 C -0.073 4.073 21 C -0.212 4.212 22 C 0.154 3.846 23 F -0.090 7.090 24 N -0.213 5.213 25 C -0.144 4.144 26 C -0.160 4.160 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.225 0.775 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.108 0.892 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.759 -21.509 2.153 22.648 hybrid contribution -0.502 -0.299 -0.725 0.931 sum -7.261 -21.807 1.428 23.029 Atomic orbital electron populations 1.69775 1.07247 1.28492 1.38586 1.25868 0.94935 1.01121 0.92669 0.86162 0.80581 0.80965 0.78326 1.18625 1.20074 1.20044 1.19511 0.94706 0.90204 1.44801 0.90624 1.17727 0.92330 0.92054 0.88427 1.20807 1.01202 0.94939 1.05446 1.20418 0.92753 0.97952 0.99539 1.17073 0.93734 0.84961 1.11137 1.42087 1.51653 1.22093 1.15286 1.15930 0.81201 0.79789 0.83205 1.90919 1.42261 1.71252 1.40748 1.44949 1.48740 1.26803 1.19987 1.19912 0.96775 0.87955 0.88683 1.21042 0.88832 0.95143 0.93776 1.22144 1.02335 0.93025 1.00900 1.21547 0.91939 0.99541 0.94262 1.21914 0.98192 0.97368 1.03741 1.18154 0.80002 0.90197 0.96223 1.91653 1.31927 1.96032 1.89427 1.66833 1.04416 1.32915 1.17131 1.20298 0.98364 0.93050 1.02643 1.21174 0.97318 0.95437 1.02115 0.91280 0.88617 0.87305 0.77514 0.77366 0.89296 0.89455 0.83299 0.83298 0.83295 0.89167 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.52 10.60 55.54 0.59 -20.93 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.91 19.31 29.56 -169.99 -5.03 14.28 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.46 9.02 -37.85 -0.34 -12.80 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 10 C -0.20 -5.23 9.74 -39.26 -0.38 -5.61 16 11 C -0.09 -2.09 8.61 -39.79 -0.34 -2.44 16 12 C 0.02 0.53 6.31 -83.57 -0.53 0.00 16 13 N -0.67 -11.79 5.31 -14.10 -0.07 -11.86 16 14 C 0.70 12.33 8.40 -86.91 -0.73 11.60 16 15 O -0.58 -12.60 13.76 5.30 0.07 -12.53 16 16 N -0.75 -9.42 5.55 -66.42 -0.37 -9.79 16 17 C 0.19 2.14 5.98 -5.20 -0.03 2.11 16 18 C 0.15 1.41 6.15 -82.59 -0.51 0.90 16 19 C -0.16 -1.05 9.72 -39.44 -0.38 -1.43 16 20 C -0.05 -0.24 10.17 -39.29 -0.40 -0.63 16 21 C -0.19 -1.20 10.09 -39.36 -0.40 -1.59 16 22 C 0.31 2.99 8.41 -17.35 -0.15 2.85 16 23 F -0.11 -1.17 17.29 2.25 0.04 -1.14 16 24 N -0.50 -5.66 10.29 -9.81 -0.10 -5.76 16 25 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 26 C -0.14 -3.66 8.61 -39.26 -0.34 -3.99 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.11 2.60 6.22 -52.49 -0.33 2.27 16 30 H 0.39 5.42 8.83 -40.82 -0.36 5.05 16 31 H 0.39 3.99 8.48 -40.82 -0.35 3.64 16 32 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 36 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -32.85 338.03 -9.24 -42.09 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -3.86 Total: 11.10 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -5.61 Total: -10.55 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.04 Total: -48.35 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.85 -9.24 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748518649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.990 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds