Wall clock time and date at job start Fri Apr 10 2020 23:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47004 * 299.99935 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99594 * 3 2 1 7 7 C 1.39885 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00245 * 175.55663 * 7 2 1 9 9 C 1.41169 * 119.99860 * 355.56107 * 7 2 1 10 10 C 1.40863 * 120.16039 * 214.77960 * 9 7 2 11 11 C 1.36374 * 119.82572 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16974 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83690 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99699 * 35.29799 * 13 12 11 15 15 O 1.21575 * 119.99975 * 355.71275 * 14 13 12 16 16 N 1.34775 * 119.99900 * 175.71096 * 14 13 12 17 17 C 1.46493 * 120.00165 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47477 * 180.02562 * 17 16 14 19 19 C 1.38144 * 119.60106 * 94.72311 * 18 17 16 20 20 C 1.38708 * 119.22053 * 179.77328 * 19 18 17 21 21 C 1.38546 * 118.45029 * 0.49831 * 20 19 18 22 22 C 1.38525 * 119.13851 * 359.74498 * 21 20 19 23 23 F 1.35106 * 119.64650 * 179.97438 * 22 21 20 24 24 N 1.31906 * 119.59568 * 275.00077 * 18 17 16 25 25 C 1.39481 * 120.33008 * 0.25887 * 12 11 10 26 26 C 1.36377 * 120.16818 * 359.43708 * 25 12 11 27 27 H 0.97000 * 120.00121 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.09088 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.91877 * 180.02562 * 11 10 9 30 30 H 0.97003 * 120.00239 * 215.30110 * 13 12 11 31 31 H 0.97008 * 119.99926 * 359.97438 * 16 14 13 32 32 H 1.09004 * 109.47144 * 300.00451 * 17 16 14 33 33 H 1.09005 * 109.47055 * 59.99828 * 17 16 14 34 34 H 1.08001 * 120.38799 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.77429 * 180.24692 * 20 19 18 36 36 H 1.08002 * 120.43063 * 179.77342 * 21 20 19 37 37 H 1.08001 * 119.91099 * 179.70004 * 25 12 11 38 38 H 1.07999 * 120.08414 * 180.26225 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2114 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8649 -3.5178 0.7976 11 6 1.1804 -4.6941 0.8848 12 6 -0.0701 -4.8239 0.2808 13 7 -0.7627 -6.0282 0.3737 14 6 -0.6811 -6.7675 1.4978 15 8 0.0577 -6.4228 2.3997 16 7 -1.4185 -7.8887 1.6219 17 6 -1.3303 -8.6920 2.8438 18 6 -2.2466 -9.8830 2.7294 19 6 -1.7442 -11.0902 2.2840 20 6 -2.5936 -12.1825 2.1863 21 6 -3.9249 -12.0163 2.5318 22 6 -4.3592 -10.7744 2.9655 23 9 -5.6555 -10.6007 3.3046 24 7 -3.5199 -9.7585 3.0506 25 6 -0.6277 -3.7551 -0.4209 26 6 0.0421 -2.5706 -0.5114 27 1 -0.4850 0.8400 -0.0004 28 1 2.8333 -3.4190 1.2654 29 1 1.6077 -5.5273 1.4229 30 1 -1.3040 -6.3352 -0.3705 31 1 -2.0083 -8.1635 0.9024 32 1 -0.3046 -9.0349 2.9799 33 1 -1.6271 -8.0855 3.6995 34 1 -0.7014 -11.1836 2.0189 35 1 -2.2266 -13.1391 1.8449 36 1 -4.6151 -12.8443 2.4643 37 1 -1.5943 -3.8646 -0.8900 38 1 -0.3928 -1.7426 -1.0515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748518649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:22 Heat of formation + Delta-G solvation = -27.090834 kcal Electronic energy + Delta-G solvation = -23928.190752 eV Core-core repulsion = 20070.407115 eV Total energy + Delta-G solvation = -3857.783637 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.07193 -41.61656 -41.04053 -39.22287 -36.42679 -35.85619 -34.69154 -33.71843 -32.36077 -31.43970 -30.60317 -28.03075 -26.44818 -24.52028 -23.76769 -23.18116 -22.60210 -21.70543 -19.65531 -19.16527 -18.85973 -18.45008 -17.80386 -17.19696 -17.10955 -17.02745 -16.53770 -16.27332 -15.74705 -15.59157 -15.13247 -14.89948 -14.57923 -14.47933 -14.11957 -14.02067 -13.85335 -13.78061 -13.54026 -13.21990 -13.05206 -12.84817 -12.73765 -12.46630 -11.81265 -11.37599 -11.25891 -11.11526 -11.01314 -10.77173 -10.65489 -10.17341 -10.05072 -9.43378 -8.66873 -8.47577 -6.29836 -0.25054 0.06883 0.86651 1.17607 1.40588 1.47888 1.56020 1.70859 2.19276 2.26374 2.41738 2.55714 2.83959 3.27107 3.40344 3.63076 3.71526 3.90658 4.03987 4.30532 4.41805 4.46382 4.56909 4.67473 4.71150 4.95731 4.97134 5.05828 5.15624 5.17284 5.33436 5.35852 5.46712 5.56799 5.71445 5.82040 6.05195 6.12895 6.25067 6.42648 6.57081 6.71477 6.99869 7.03879 7.10470 7.62336 8.45316 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.002127 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.665286 B =13162.640377 C =13535.653402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.271 1.271 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.096 4.096 12 C 0.042 3.958 13 N -0.658 5.658 14 C 0.698 3.302 15 O -0.619 6.619 16 N -0.724 5.724 17 C 0.193 3.807 18 C 0.131 3.869 19 C -0.149 4.149 20 C -0.035 4.035 21 C -0.174 4.174 22 C 0.277 3.723 23 F -0.127 7.127 24 N -0.539 5.539 25 C -0.122 4.122 26 C -0.158 4.158 27 H 0.283 0.717 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.414 0.586 31 H 0.409 0.591 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.178 0.822 37 H 0.122 0.878 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -25.342 0.198 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.117 4.117 12 C -0.052 4.052 13 N -0.306 5.306 14 C 0.398 3.602 15 O -0.499 6.499 16 N -0.381 5.381 17 C 0.068 3.932 18 C -0.006 4.006 19 C -0.170 4.170 20 C -0.060 4.060 21 C -0.195 4.195 22 C 0.123 3.877 23 F -0.106 7.106 24 N -0.255 5.255 25 C -0.142 4.142 26 C -0.179 4.179 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.251 0.749 31 H 0.245 0.755 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.192 0.808 35 H 0.210 0.790 36 H 0.195 0.805 37 H 0.140 0.860 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.167 -24.115 1.341 25.193 hybrid contribution -0.482 0.241 -0.447 0.700 sum -7.649 -23.874 0.894 25.085 Atomic orbital electron populations 1.69842 1.08577 1.29777 1.39020 1.26743 0.95817 1.04342 0.91700 0.85055 0.79094 0.76163 0.78697 1.18322 1.18779 1.19584 1.19731 0.94806 0.91290 1.46928 0.90916 1.18046 0.93397 0.92788 0.89614 1.20941 1.01634 0.95433 1.05801 1.20539 0.93618 0.97551 0.99947 1.17087 0.93043 0.86312 1.08788 1.41862 1.51518 1.20737 1.16470 1.16059 0.81122 0.80556 0.82441 1.90896 1.44266 1.72591 1.42165 1.44739 1.47349 1.25067 1.20921 1.19950 0.98153 0.88228 0.86845 1.20779 0.88138 0.95537 0.96163 1.22424 1.03706 0.91971 0.98859 1.22053 0.90851 1.00637 0.92464 1.22275 0.99380 0.96429 1.01427 1.18522 0.79524 0.91393 0.98275 1.91609 1.32890 1.96221 1.89884 1.66605 1.05582 1.34803 1.18461 1.20526 0.99281 0.92085 1.02319 1.21155 0.97548 0.96322 1.02826 0.90603 0.88486 0.87082 0.74924 0.75548 0.87970 0.92084 0.80836 0.79031 0.80490 0.85975 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.58 10.60 21.82 0.23 -45.35 16 2 C 0.03 1.32 5.42 85.23 0.46 1.79 16 3 Si 0.99 40.01 29.56 68.60 2.03 42.04 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.50 -27.78 9.02 23.39 0.21 -27.56 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 9 C 0.06 3.59 5.55 -21.28 -0.12 3.48 16 10 C -0.22 -11.54 9.74 22.48 0.22 -11.32 16 11 C -0.10 -4.71 8.61 22.13 0.19 -4.52 16 12 C 0.04 1.85 6.31 38.56 0.24 2.10 16 13 N -0.66 -22.26 5.31 -316.78 -1.68 -23.94 16 14 C 0.70 23.93 8.40 179.05 1.50 25.43 16 15 O -0.62 -27.13 13.76 -3.95 -0.05 -27.19 16 16 N -0.72 -17.20 5.55 -482.30 -2.68 -19.88 16 17 C 0.19 4.16 5.98 85.64 0.51 4.67 16 18 C 0.13 2.26 6.15 42.53 0.26 2.52 16 19 C -0.15 -1.37 9.72 22.36 0.22 -1.16 16 20 C -0.03 -0.19 10.17 22.46 0.23 0.04 16 21 C -0.17 -1.61 10.09 22.41 0.23 -1.38 16 22 C 0.28 5.08 8.41 84.73 0.71 5.79 16 23 F -0.13 -2.67 17.29 44.97 0.78 -1.90 16 24 N -0.54 -11.99 10.29 -184.94 -1.90 -13.89 16 25 C -0.12 -5.57 9.90 22.14 0.22 -5.35 16 26 C -0.16 -8.43 8.61 22.48 0.19 -8.24 16 27 H 0.28 13.89 8.30 -92.71 -0.77 13.13 16 28 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.11 5.37 6.22 -2.91 -0.02 5.35 16 30 H 0.41 10.36 8.83 -92.71 -0.82 9.54 16 31 H 0.41 7.39 8.48 -92.70 -0.79 6.61 16 32 H 0.10 1.93 8.04 -2.39 -0.02 1.91 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.19 -0.55 8.06 -2.91 -0.02 -0.57 16 36 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 38 H 0.12 6.55 6.13 -2.91 -0.02 6.53 16 Total: -1.00 -75.36 338.03 1.53 -73.82 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.47 Total: 30.01 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 5.28 Total: -13.73 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -6.03 Total: -103.07 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -75.36 1.53 -73.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748518649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds