Wall clock time and date at job start Fri Apr 10 2020 23:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47383 * 270.00594 * 3 2 1 5 5 H 1.48503 * 109.47208 * 30.00504 * 3 2 1 6 6 H 1.48506 * 109.47200 * 150.00289 * 3 2 1 7 7 C 1.37875 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99829 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46830 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46639 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99564 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00573 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99856 * 180.02562 * 12 11 10 15 15 N 1.40105 * 119.99825 * 359.97438 * 14 12 11 16 16 C 1.39937 * 119.99550 * 179.97438 * 15 14 12 17 17 C 1.38861 * 120.01324 * 180.02562 * 16 15 14 18 18 C 1.38113 * 119.98022 * 180.02562 * 17 16 15 19 19 C 1.38704 * 120.01645 * 0.02562 * 18 17 16 20 20 O 1.36004 * 119.97592 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99566 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.46886 * 299.99663 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99881 * 21 20 19 24 24 C 1.38697 * 120.03774 * 0.23666 * 19 18 17 25 25 C 1.38111 * 120.02159 * 359.48438 * 24 19 18 26 26 H 0.97004 * 119.99406 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46721 * 60.00344 * 9 7 2 28 28 H 1.08995 * 109.47341 * 300.00828 * 9 7 2 29 29 H 1.09004 * 109.47328 * 60.00544 * 10 9 7 30 30 H 1.08995 * 109.47694 * 300.00440 * 10 9 7 31 31 H 0.96997 * 119.99815 * 0.02562 * 11 10 9 32 32 H 0.97004 * 120.00023 * 180.02562 * 14 12 11 33 33 H 0.96994 * 120.00135 * 0.02562 * 15 14 12 34 34 H 1.08000 * 120.01364 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.99421 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.98757 * 179.74630 * 24 19 18 38 38 H 1.07999 * 120.00964 * 180.25449 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 -0.0003 13 8 3.4024 -6.0981 -0.0007 14 7 1.5127 -7.2652 -0.0003 15 7 0.1116 -7.2652 0.0007 16 6 -0.5880 -8.4771 0.0002 17 6 -1.9766 -8.4775 0.0007 18 6 -2.6664 -9.6740 0.0008 19 6 -1.9725 -10.8750 0.0009 20 8 -2.6526 -12.0527 0.0014 21 6 -1.8743 -13.2513 0.0021 22 9 -1.0673 -13.2837 -1.1402 23 9 -1.0672 -13.2826 1.1444 24 6 -0.5855 -10.8754 0.0059 25 6 0.1059 -9.6799 0.0000 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8895 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.5427 -4.9307 0.0000 32 1 1.9977 -8.1053 -0.0002 33 1 -0.3733 -6.4252 0.0010 34 1 -2.5171 -7.5424 0.0010 35 1 -3.7464 -9.6746 0.0007 36 1 -2.5383 -14.1157 0.0021 37 1 -0.0461 -11.8110 0.0101 38 1 1.1859 -9.6805 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753265135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:25 Heat of formation + Delta-G solvation = -108.236584 kcal Electronic energy + Delta-G solvation = -24865.669371 eV Core-core repulsion = 20573.597766 eV Total energy + Delta-G solvation = -4292.071605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.71602 -47.70723 -40.46900 -39.76553 -38.17176 -35.82988 -35.01648 -32.87222 -31.75795 -31.28849 -29.46862 -28.14961 -26.11739 -24.91036 -23.43855 -22.29578 -21.46499 -20.61260 -19.35134 -19.01786 -18.45580 -18.26795 -18.06731 -16.42174 -16.32889 -16.07117 -15.48696 -15.19681 -14.94202 -14.63066 -14.54998 -14.32156 -14.22706 -14.04135 -13.84395 -13.69356 -13.68094 -13.45580 -13.07719 -13.01578 -12.33919 -12.28051 -11.38198 -11.26668 -11.22299 -11.06361 -10.68142 -10.41472 -10.27879 -9.65586 -9.36403 -9.33500 -9.25525 -8.64457 -8.42644 -7.27571 -6.13667 -4.16514 1.01426 1.19484 1.90964 2.27121 3.10633 3.27259 3.28825 3.30958 3.34361 3.40153 3.49598 3.91404 4.26068 4.37841 4.46390 4.51725 4.78774 4.87910 5.01001 5.23747 5.34838 5.61751 5.62579 5.95549 5.97705 6.11318 6.25194 6.29410 6.38552 6.66123 6.75548 6.77340 7.17237 7.36915 7.49448 7.54898 7.84659 8.18245 8.31447 8.68467 8.89295 9.48599 10.97956 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.002035 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.318607 B =13757.325812 C =14445.548718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.137 3.863 11 N -0.734 5.734 12 C 0.707 3.293 13 O -0.581 6.581 14 N -0.541 5.541 15 N -0.546 5.546 16 C 0.205 3.795 17 C -0.157 4.157 18 C -0.076 4.076 19 C 0.040 3.960 20 O -0.322 6.322 21 C 0.411 3.589 22 F -0.201 7.201 23 F -0.201 7.201 24 C -0.133 4.133 25 C -0.162 4.162 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.389 0.611 32 H 0.427 0.573 33 H 0.426 0.574 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.179 0.821 37 H 0.133 0.867 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -27.133 0.011 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.014 3.986 11 N -0.389 5.389 12 C 0.406 3.594 13 O -0.456 6.456 14 N -0.297 5.297 15 N -0.276 5.276 16 C 0.102 3.898 17 C -0.181 4.181 18 C -0.095 4.095 19 C -0.004 4.004 20 O -0.240 6.240 21 C 0.321 3.679 22 F -0.183 7.183 23 F -0.183 7.183 24 C -0.152 4.152 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.272 0.728 33 H 0.269 0.731 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.195 0.805 37 H 0.150 0.850 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.939 -26.791 0.016 27.943 hybrid contribution 0.255 0.777 -0.011 0.817 sum -7.685 -26.014 0.005 27.126 Atomic orbital electron populations 1.69955 1.06090 1.26934 1.50299 1.24999 0.94923 0.99466 0.94929 0.86490 0.79830 0.82888 0.78219 1.20540 1.21162 1.19704 1.21026 0.93294 0.90248 1.51463 0.92148 1.19335 0.94231 0.91069 0.97845 1.21706 0.95774 0.80035 1.01051 1.45578 1.09627 1.05558 1.78100 1.15842 0.85083 0.79911 0.78524 1.90996 1.10598 1.84592 1.59428 1.44600 0.93828 1.08813 1.82424 1.43387 0.93814 1.06436 1.83981 1.17698 0.90865 0.84788 0.96456 1.20311 0.91048 0.98496 1.08222 1.20114 1.00149 0.88501 1.00772 1.18574 0.90613 0.84823 1.06438 1.86591 1.35397 1.12587 1.89445 1.23309 0.82277 0.90566 0.71788 1.93099 1.76352 1.96646 1.52159 1.93098 1.76339 1.96648 1.52165 1.21228 0.92445 0.99286 1.02243 1.20239 0.99628 0.90352 1.08341 0.92812 0.95925 0.95919 0.92375 0.92374 0.77721 0.72779 0.73115 0.84375 0.84495 0.80508 0.84969 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.84 5.61 -4.04 -0.02 2.82 16 11 N -0.73 -12.48 5.52 -65.22 -0.36 -12.84 16 12 C 0.71 12.03 8.68 -86.92 -0.75 11.28 16 13 O -0.58 -12.09 17.18 5.29 0.09 -12.00 16 14 N -0.54 -6.99 6.22 27.63 0.17 -6.82 16 15 N -0.55 -5.91 6.46 32.44 0.21 -5.70 16 16 C 0.21 2.10 6.72 -83.70 -0.56 1.54 16 17 C -0.16 -1.39 9.89 -39.40 -0.39 -1.78 16 18 C -0.08 -0.67 9.98 -39.45 -0.39 -1.06 16 19 C 0.04 0.39 6.48 -39.24 -0.25 0.13 16 20 O -0.32 -2.70 10.43 -19.75 -0.21 -2.90 16 21 C 0.41 2.41 5.98 101.05 0.60 3.02 16 22 F -0.20 -1.55 15.59 2.25 0.04 -1.52 16 23 F -0.20 -1.55 15.56 2.25 0.04 -1.52 16 24 C -0.13 -1.33 8.25 -39.46 -0.33 -1.66 16 25 C -0.16 -1.65 9.48 -39.40 -0.37 -2.03 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.39 5.63 6.39 -40.82 -0.26 5.36 16 32 H 0.43 4.91 6.71 -182.59 -1.22 3.68 16 33 H 0.43 4.17 6.72 -182.60 -1.23 2.94 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.18 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.13 1.25 5.09 -52.49 -0.27 0.98 16 38 H 0.12 1.13 6.20 -52.49 -0.33 0.81 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -33.32 335.82 -8.08 -41.40 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.80 Total: 6.22 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.03 Total: -0.58 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.76 Total: -50.28 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.12 Total: -14.91 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.32 -8.08 -41.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753265135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.839 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds