Wall clock time and date at job start Fri Apr 10 2020 23:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47383 * 270.00594 * 3 2 1 5 5 H 1.48503 * 109.47208 * 30.00504 * 3 2 1 6 6 H 1.48506 * 109.47200 * 150.00289 * 3 2 1 7 7 C 1.37875 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99829 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46830 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46639 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99564 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00573 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99856 * 180.02562 * 12 11 10 15 15 N 1.40105 * 119.99825 * 359.97438 * 14 12 11 16 16 C 1.39937 * 119.99550 * 179.97438 * 15 14 12 17 17 C 1.38861 * 120.01324 * 180.02562 * 16 15 14 18 18 C 1.38113 * 119.98022 * 180.02562 * 17 16 15 19 19 C 1.38704 * 120.01645 * 0.02562 * 18 17 16 20 20 O 1.36004 * 119.97592 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99566 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.46886 * 299.99663 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99881 * 21 20 19 24 24 C 1.38697 * 120.03774 * 0.23666 * 19 18 17 25 25 C 1.38111 * 120.02159 * 359.48438 * 24 19 18 26 26 H 0.97004 * 119.99406 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46721 * 60.00344 * 9 7 2 28 28 H 1.08995 * 109.47341 * 300.00828 * 9 7 2 29 29 H 1.09004 * 109.47328 * 60.00544 * 10 9 7 30 30 H 1.08995 * 109.47694 * 300.00440 * 10 9 7 31 31 H 0.96997 * 119.99815 * 0.02562 * 11 10 9 32 32 H 0.97004 * 120.00023 * 180.02562 * 14 12 11 33 33 H 0.96994 * 120.00135 * 0.02562 * 15 14 12 34 34 H 1.08000 * 120.01364 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.99421 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.98757 * 179.74630 * 24 19 18 38 38 H 1.07999 * 120.00964 * 180.25449 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 -0.0003 13 8 3.4024 -6.0981 -0.0007 14 7 1.5127 -7.2652 -0.0003 15 7 0.1116 -7.2652 0.0007 16 6 -0.5880 -8.4771 0.0002 17 6 -1.9766 -8.4775 0.0007 18 6 -2.6664 -9.6740 0.0008 19 6 -1.9725 -10.8750 0.0009 20 8 -2.6526 -12.0527 0.0014 21 6 -1.8743 -13.2513 0.0021 22 9 -1.0673 -13.2837 -1.1402 23 9 -1.0672 -13.2826 1.1444 24 6 -0.5855 -10.8754 0.0059 25 6 0.1059 -9.6799 0.0000 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8895 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.5427 -4.9307 0.0000 32 1 1.9977 -8.1053 -0.0002 33 1 -0.3733 -6.4252 0.0010 34 1 -2.5171 -7.5424 0.0010 35 1 -3.7464 -9.6746 0.0007 36 1 -2.5383 -14.1157 0.0021 37 1 -0.0461 -11.8110 0.0101 38 1 1.1859 -9.6805 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753265135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:24 Heat of formation + Delta-G solvation = -131.323943 kcal Electronic energy + Delta-G solvation = -24866.670514 eV Core-core repulsion = 20573.597766 eV Total energy + Delta-G solvation = -4293.072748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.24227 -48.24744 -41.46971 -40.78092 -38.98001 -36.82550 -36.69638 -34.79059 -32.75510 -32.08349 -31.21237 -28.94538 -26.81274 -26.67305 -24.29730 -23.16750 -23.02328 -21.99981 -20.10148 -19.97266 -19.42086 -18.80159 -18.78799 -18.44997 -17.05770 -16.97214 -16.88017 -16.52271 -16.37031 -15.62122 -15.60486 -15.22693 -15.15213 -14.96823 -14.88830 -14.59496 -14.50403 -14.28451 -14.12751 -14.08766 -13.72067 -13.22192 -12.96101 -12.86330 -12.53301 -12.35507 -12.18329 -11.91616 -11.83163 -11.57301 -11.33107 -10.60769 -10.36588 -10.07850 -9.93337 -8.23774 -8.15068 -6.33430 0.28582 0.43388 0.89851 1.43053 1.43248 1.54536 1.76096 1.94453 2.03907 2.43207 2.65154 2.73088 3.11507 3.57527 3.66620 3.77461 3.80373 3.90673 4.15974 4.33340 4.41324 4.50515 4.63644 4.82314 4.86457 4.92234 5.18850 5.21595 5.25061 5.31548 5.46849 5.54170 5.58717 5.78106 5.97771 6.10581 6.17280 6.45165 6.79506 7.09604 7.35216 7.37909 8.87970 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.002035 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.318607 B =13757.325812 C =14445.548718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.157 3.843 11 N -0.727 5.727 12 C 0.709 3.291 13 O -0.622 6.622 14 N -0.525 5.525 15 N -0.545 5.545 16 C 0.190 3.810 17 C -0.150 4.150 18 C -0.081 4.081 19 C 0.034 3.966 20 O -0.328 6.328 21 C 0.404 3.596 22 F -0.213 7.213 23 F -0.213 7.213 24 C -0.146 4.146 25 C -0.172 4.172 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.403 0.597 32 H 0.436 0.564 33 H 0.431 0.569 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.232 0.768 37 H 0.133 0.867 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -27.789 0.003 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.033 3.967 11 N -0.384 5.384 12 C 0.408 3.592 13 O -0.500 6.500 14 N -0.279 5.279 15 N -0.278 5.278 16 C 0.088 3.912 17 C -0.173 4.173 18 C -0.100 4.100 19 C -0.011 4.011 20 O -0.246 6.246 21 C 0.314 3.686 22 F -0.195 7.195 23 F -0.195 7.195 24 C -0.165 4.165 25 C -0.195 4.195 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.239 0.761 32 H 0.282 0.718 33 H 0.275 0.725 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.151 0.849 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.944 -27.515 0.007 28.932 hybrid contribution 0.448 0.822 -0.009 0.936 sum -8.496 -26.693 -0.002 28.013 Atomic orbital electron populations 1.70050 1.07433 1.27962 1.51001 1.25844 0.95811 1.03000 0.94492 0.85462 0.78640 0.78585 0.78463 1.19850 1.20608 1.19125 1.21451 0.93649 0.91830 1.51466 0.92223 1.19137 0.94231 0.91514 0.96534 1.21199 0.94759 0.80601 1.00178 1.45212 1.10170 1.04605 1.78374 1.15776 0.84586 0.80482 0.78392 1.90968 1.12439 1.85431 1.61171 1.44234 0.95181 1.07794 1.80680 1.43367 0.92357 1.07093 1.84945 1.17845 0.91440 0.84330 0.97593 1.20604 0.90518 0.99574 1.06640 1.20433 1.01309 0.88105 1.00178 1.18837 0.90667 0.85882 1.05666 1.86593 1.35946 1.12780 1.89247 1.24230 0.82556 0.91033 0.70751 1.93072 1.76927 1.96641 1.52878 1.93071 1.76914 1.96644 1.52880 1.21314 0.92913 0.99298 1.02984 1.20386 1.00077 0.90618 1.08400 0.92561 0.97103 0.97099 0.93284 0.93258 0.76129 0.71781 0.72545 0.82249 0.82364 0.75240 0.84910 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.56 5.61 86.38 0.48 7.04 16 11 N -0.73 -24.53 5.52 -478.53 -2.64 -27.17 16 12 C 0.71 23.88 8.68 179.05 1.55 25.44 16 13 O -0.62 -26.00 17.18 -3.98 -0.07 -26.07 16 14 N -0.53 -13.18 6.22 -184.75 -1.15 -14.33 16 15 N -0.54 -11.14 6.46 -51.27 -0.33 -11.47 16 16 C 0.19 3.64 6.72 38.14 0.26 3.89 16 17 C -0.15 -2.37 9.89 22.39 0.22 -2.15 16 18 C -0.08 -1.27 9.98 22.35 0.22 -1.05 16 19 C 0.03 0.62 6.48 22.49 0.15 0.76 16 20 O -0.33 -4.90 10.43 -93.59 -0.98 -5.87 16 21 C 0.40 4.00 5.98 113.37 0.68 4.68 16 22 F -0.21 -3.06 15.59 44.97 0.70 -2.36 16 23 F -0.21 -3.05 15.56 44.97 0.70 -2.35 16 24 C -0.15 -2.82 8.25 22.35 0.18 -2.64 16 25 C -0.17 -3.38 9.48 22.39 0.21 -3.17 16 26 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.40 11.37 6.39 -92.71 -0.59 10.77 16 32 H 0.44 9.73 6.71 -213.31 -1.43 8.30 16 33 H 0.43 7.85 6.72 -213.32 -1.43 6.41 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.23 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.13 2.47 5.09 -2.91 -0.01 2.46 16 38 H 0.13 2.29 6.20 -2.91 -0.02 2.27 16 Total: -1.00 -71.21 335.82 1.05 -70.16 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -2.30 Total: 21.85 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 4.81 Total: 5.37 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.84 Total: -105.81 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.04 Total: -31.94 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.40 Total: -4.71 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -71.21 1.05 -70.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753265135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.164 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds