Wall clock time and date at job start Fri Apr 10 2020 23:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00597 * 2 1 4 4 H 1.48501 * 109.47048 * 270.00547 * 3 2 1 5 5 H 1.48504 * 109.46658 * 29.99859 * 3 2 1 6 6 H 1.48494 * 109.47572 * 149.99985 * 3 2 1 7 7 C 1.37884 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99895 * 97.24276 * 10 9 7 12 12 C 1.50700 * 109.47219 * 269.99904 * 11 10 9 13 13 C 1.38222 * 119.62077 * 94.97844 * 12 11 10 14 14 C 1.38628 * 119.16372 * 179.79322 * 13 12 11 15 15 C 1.38677 * 118.41737 * 0.47138 * 14 13 12 16 16 C 1.38180 * 119.16479 * 359.50693 * 15 14 13 17 17 N 1.31858 * 119.61655 * 275.00312 * 12 11 10 18 18 C 1.34770 * 119.99931 * 277.23972 * 10 9 7 19 19 O 1.21517 * 120.00034 * 176.74608 * 18 10 9 20 20 C 1.48167 * 119.99895 * 356.74891 * 18 10 9 21 21 C 1.39228 * 119.70506 * 186.68479 * 20 18 10 22 22 C 1.38666 * 119.12002 * 179.79334 * 21 20 18 23 23 C 1.38497 * 118.52188 * 0.47260 * 22 21 20 24 24 C 1.38896 * 119.32813 * 359.74983 * 23 22 21 25 25 F 1.35107 * 119.58073 * 179.97438 * 24 23 22 26 26 N 1.31703 * 120.84091 * 0.02562 * 24 23 22 27 27 H 0.97004 * 119.99560 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46999 * 59.99965 * 9 7 2 29 29 H 1.09007 * 109.46699 * 299.99942 * 9 7 2 30 30 H 1.09001 * 109.47165 * 150.00298 * 11 10 9 31 31 H 1.09001 * 109.47610 * 29.99694 * 11 10 9 32 32 H 1.08001 * 120.42441 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.79630 * 180.23401 * 14 13 12 34 34 H 1.08003 * 120.42040 * 179.78179 * 15 14 13 35 35 H 1.07997 * 119.61605 * 180.25076 * 16 15 14 36 36 H 1.08004 * 120.43828 * 0.02677 * 21 20 18 37 37 H 1.07996 * 120.73653 * 180.22867 * 22 21 20 38 38 H 1.07998 * 120.33548 * 179.76810 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5755 0.0001 11 6 4.3942 -3.2131 -1.2585 12 6 3.2005 -3.9015 -1.8686 13 6 2.4437 -3.2424 -2.8191 14 6 1.3502 -3.8862 -3.3773 15 6 1.0515 -5.1710 -2.9493 16 6 1.8542 -5.7666 -1.9951 17 7 2.8897 -5.1254 -1.4891 18 6 4.0861 -3.2596 1.1580 19 8 4.4346 -4.4237 1.1515 20 6 3.7560 -2.5922 2.4391 21 6 3.9799 -3.2577 3.6414 22 6 3.6706 -2.6201 4.8333 23 6 3.1386 -1.3424 4.7811 24 6 2.9369 -0.7393 3.5463 25 9 2.4178 0.5067 3.4895 26 7 3.2442 -1.3671 2.4300 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6799 0.8894 29 1 3.8745 -0.6810 -0.8906 30 1 5.1767 -3.9466 -1.0646 31 1 4.7684 -2.4561 -1.9477 32 1 2.7032 -2.2399 -3.1259 33 1 0.7430 -3.3974 -4.1248 34 1 0.2049 -5.7012 -3.3599 35 1 1.6307 -6.7685 -1.6595 36 1 4.3925 -4.2558 3.6458 37 1 3.8371 -3.1105 5.7810 38 1 2.8836 -0.8202 5.6914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754424371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:27 Heat of formation + Delta-G solvation = 32.936770 kcal Electronic energy + Delta-G solvation = -26530.353530 eV Core-core repulsion = 22675.172885 eV Total energy + Delta-G solvation = -3855.180645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.50202 -40.30303 -39.60438 -38.18230 -35.32600 -32.82707 -32.33269 -31.90833 -31.24279 -30.52125 -28.06301 -26.50442 -24.15140 -23.07363 -23.02829 -22.29632 -21.65560 -19.54030 -17.30792 -17.09576 -16.97487 -16.30817 -15.99525 -15.80840 -15.62229 -15.41179 -15.28271 -15.13852 -14.29890 -13.92750 -13.52470 -13.40772 -13.07327 -12.97525 -12.84387 -12.68299 -12.31699 -12.26006 -12.00494 -11.85808 -11.55232 -11.32018 -10.87678 -10.56377 -10.17244 -9.75613 -9.71554 -9.44168 -9.34279 -8.92938 -8.74486 -8.69867 -8.54839 -8.35238 -7.72129 -6.01746 -3.94931 0.88909 1.39392 1.56408 1.81750 3.19487 3.29516 3.38882 3.42725 3.58652 3.96084 4.19955 4.41025 4.46371 4.68419 4.77034 5.00467 5.09093 5.20514 5.21887 5.26221 5.33889 5.49387 5.54334 5.62996 5.80800 5.93384 5.99516 6.02823 6.13700 6.19821 6.23375 6.49372 6.59389 6.66508 6.77001 7.13009 7.17461 7.41471 7.67534 7.92925 8.10998 8.53372 8.55117 8.81463 9.02817 9.60256 11.11614 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.006725 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.552245 B = 4162.774291 C = 5690.099186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.080 3.920 3 Si 0.866 3.134 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.492 4.492 8 H 0.068 0.932 9 C 0.196 3.804 10 N -0.567 5.567 11 C 0.169 3.831 12 C 0.119 3.881 13 C -0.131 4.131 14 C -0.078 4.078 15 C -0.178 4.178 16 C 0.088 3.912 17 N -0.460 5.460 18 C 0.570 3.430 19 O -0.536 6.536 20 C 0.122 3.878 21 C -0.133 4.133 22 C -0.067 4.067 23 C -0.183 4.183 24 C 0.297 3.703 25 F -0.110 7.110 26 N -0.422 5.422 27 H 0.261 0.739 28 H 0.078 0.922 29 H 0.017 0.983 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -4.838 2.181 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.531 4.531 8 H 0.086 0.914 9 C 0.076 3.924 10 N -0.297 5.297 11 C 0.045 3.955 12 C -0.020 4.020 13 C -0.151 4.151 14 C -0.104 4.104 15 C -0.198 4.198 16 C -0.070 4.070 17 N -0.169 5.169 18 C 0.356 3.644 19 O -0.414 6.414 20 C -0.016 4.016 21 C -0.154 4.154 22 C -0.093 4.093 23 C -0.205 4.205 24 C 0.142 3.858 25 F -0.089 7.089 26 N -0.138 5.138 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.432 -5.254 1.994 9.318 hybrid contribution -0.816 1.486 0.112 1.699 sum 6.616 -3.768 2.106 7.900 Atomic orbital electron populations 1.69901 1.06185 1.26588 1.51167 1.24686 0.94430 0.98361 0.94702 0.87002 0.81035 0.84572 0.77984 1.20794 1.21273 1.18652 1.21063 0.88609 0.94203 1.49220 0.91402 1.20570 0.96560 0.76935 0.98364 1.47876 1.61682 1.15796 1.04299 1.20227 0.93170 0.96504 0.85613 1.21508 0.97181 0.90449 0.92833 1.21919 0.95645 1.00320 0.97227 1.21479 0.95999 0.94333 0.98636 1.22035 1.01091 0.96617 1.00030 1.22619 0.91221 0.99548 0.93611 1.67528 1.16727 1.09025 1.23614 1.17719 0.78256 0.85358 0.83041 1.90753 1.48822 1.15175 1.86652 1.20994 0.96570 0.89609 0.94467 1.22078 1.00064 1.01663 0.91605 1.21330 0.95812 0.93380 0.98729 1.21990 1.03456 0.97309 0.97745 1.18408 0.95437 0.82071 0.89913 1.91631 1.83383 1.37033 1.96894 1.68036 1.08876 1.09050 1.27828 0.92890 0.90515 0.96495 0.88957 0.89187 0.84866 0.85356 0.85600 0.83578 0.83249 0.83703 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.17 27.47 -169.99 -4.67 16.51 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.49 -13.19 8.51 -34.44 -0.29 -13.49 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.20 4.49 3.88 -5.19 -0.02 4.47 16 10 N -0.57 -11.96 2.46 -177.43 -0.44 -12.40 16 11 C 0.17 3.08 5.73 -5.20 -0.03 3.05 16 12 C 0.12 2.30 6.36 -82.59 -0.53 1.77 16 13 C -0.13 -2.35 9.72 -39.44 -0.38 -2.73 16 14 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 15 C -0.18 -2.73 10.11 -39.44 -0.40 -3.13 16 16 C 0.09 1.48 11.18 -17.55 -0.20 1.29 16 17 N -0.46 -9.11 10.27 -9.47 -0.10 -9.21 16 18 C 0.57 12.19 7.58 -12.19 -0.09 12.09 16 19 O -0.54 -11.88 15.95 5.35 0.09 -11.80 16 20 C 0.12 2.43 6.62 -83.01 -0.55 1.88 16 21 C -0.13 -2.09 9.63 -39.06 -0.38 -2.46 16 22 C -0.07 -0.85 10.16 -39.33 -0.40 -1.25 16 23 C -0.18 -2.61 10.09 -39.24 -0.40 -3.00 16 24 C 0.30 5.66 8.41 -17.36 -0.15 5.51 16 25 F -0.11 -2.26 17.29 2.25 0.04 -2.22 16 26 N -0.42 -9.03 5.00 -10.13 -0.05 -9.08 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.08 1.81 4.30 -52.23 -0.22 1.59 16 29 H 0.02 0.37 7.24 -51.92 -0.38 0.00 16 30 H 0.09 1.63 7.47 -51.93 -0.39 1.24 16 31 H 0.09 1.37 7.75 -51.93 -0.40 0.97 16 32 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.15 2.13 7.65 -52.48 -0.40 1.72 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -34.00 335.91 -7.52 -41.52 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.92 Total: 3.37 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -4.30 Total: 4.44 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.19 Total: -56.88 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.00 -7.52 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754424371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.453 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds