Wall clock time and date at job start Fri Apr 10 2020 23:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00597 * 2 1 4 4 H 1.48501 * 109.47048 * 270.00547 * 3 2 1 5 5 H 1.48504 * 109.46658 * 29.99859 * 3 2 1 6 6 H 1.48494 * 109.47572 * 149.99985 * 3 2 1 7 7 C 1.37884 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99895 * 97.24276 * 10 9 7 12 12 C 1.50700 * 109.47219 * 269.99904 * 11 10 9 13 13 C 1.38222 * 119.62077 * 94.97844 * 12 11 10 14 14 C 1.38628 * 119.16372 * 179.79322 * 13 12 11 15 15 C 1.38677 * 118.41737 * 0.47138 * 14 13 12 16 16 C 1.38180 * 119.16479 * 359.50693 * 15 14 13 17 17 N 1.31858 * 119.61655 * 275.00312 * 12 11 10 18 18 C 1.34770 * 119.99931 * 277.23972 * 10 9 7 19 19 O 1.21517 * 120.00034 * 176.74608 * 18 10 9 20 20 C 1.48167 * 119.99895 * 356.74891 * 18 10 9 21 21 C 1.39228 * 119.70506 * 186.68479 * 20 18 10 22 22 C 1.38666 * 119.12002 * 179.79334 * 21 20 18 23 23 C 1.38497 * 118.52188 * 0.47260 * 22 21 20 24 24 C 1.38896 * 119.32813 * 359.74983 * 23 22 21 25 25 F 1.35107 * 119.58073 * 179.97438 * 24 23 22 26 26 N 1.31703 * 120.84091 * 0.02562 * 24 23 22 27 27 H 0.97004 * 119.99560 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46999 * 59.99965 * 9 7 2 29 29 H 1.09007 * 109.46699 * 299.99942 * 9 7 2 30 30 H 1.09001 * 109.47165 * 150.00298 * 11 10 9 31 31 H 1.09001 * 109.47610 * 29.99694 * 11 10 9 32 32 H 1.08001 * 120.42441 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.79630 * 180.23401 * 14 13 12 34 34 H 1.08003 * 120.42040 * 179.78179 * 15 14 13 35 35 H 1.07997 * 119.61605 * 180.25076 * 16 15 14 36 36 H 1.08004 * 120.43828 * 0.02677 * 21 20 18 37 37 H 1.07996 * 120.73653 * 180.22867 * 22 21 20 38 38 H 1.07998 * 120.33548 * 179.76810 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5755 0.0001 11 6 4.3942 -3.2131 -1.2585 12 6 3.2005 -3.9015 -1.8686 13 6 2.4437 -3.2424 -2.8191 14 6 1.3502 -3.8862 -3.3773 15 6 1.0515 -5.1710 -2.9493 16 6 1.8542 -5.7666 -1.9951 17 7 2.8897 -5.1254 -1.4891 18 6 4.0861 -3.2596 1.1580 19 8 4.4346 -4.4237 1.1515 20 6 3.7560 -2.5922 2.4391 21 6 3.9799 -3.2577 3.6414 22 6 3.6706 -2.6201 4.8333 23 6 3.1386 -1.3424 4.7811 24 6 2.9369 -0.7393 3.5463 25 9 2.4178 0.5067 3.4895 26 7 3.2442 -1.3671 2.4300 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6799 0.8894 29 1 3.8745 -0.6810 -0.8906 30 1 5.1767 -3.9466 -1.0646 31 1 4.7684 -2.4561 -1.9477 32 1 2.7032 -2.2399 -3.1259 33 1 0.7430 -3.3974 -4.1248 34 1 0.2049 -5.7012 -3.3599 35 1 1.6307 -6.7685 -1.6595 36 1 4.3925 -4.2558 3.6458 37 1 3.8371 -3.1105 5.7810 38 1 2.8836 -0.8202 5.6914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754424371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:26 Heat of formation + Delta-G solvation = 11.040730 kcal Electronic energy + Delta-G solvation = -26531.303013 eV Core-core repulsion = 22675.172885 eV Total energy + Delta-G solvation = -3856.130128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94941 -41.74823 -40.94202 -39.67072 -36.99246 -34.56969 -33.89984 -33.28204 -32.67598 -31.85195 -29.91929 -27.97170 -25.57549 -24.49031 -24.35874 -24.06914 -23.03398 -21.02718 -19.02931 -18.73952 -18.58895 -17.71478 -17.26505 -17.17709 -17.07271 -16.91950 -16.75831 -16.54923 -16.05652 -15.55680 -15.00944 -14.83823 -14.59579 -14.37377 -14.34975 -14.10606 -13.98322 -13.68643 -13.50398 -13.27394 -13.09985 -12.73217 -12.62086 -12.32311 -12.04166 -11.65107 -11.29433 -11.02274 -10.71102 -10.65221 -10.33731 -10.09406 -10.04803 -9.83962 -9.38608 -8.17313 -6.13056 -0.42217 0.15912 0.22737 0.47764 1.34219 1.40728 1.48954 1.71529 2.13377 2.41743 2.56534 2.80331 3.03731 3.22686 3.37745 3.46769 3.72180 3.89283 3.94321 4.04226 4.05168 4.23021 4.31567 4.35219 4.48183 4.57081 4.75225 4.75287 4.80321 4.91144 4.93854 5.02154 5.22779 5.27775 5.34518 5.59557 5.60037 5.77539 5.87615 6.26602 6.47628 6.63492 6.82262 7.18091 7.20304 7.46430 9.00081 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.006725 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.552245 B = 4162.774291 C = 5690.099186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.466 4.466 8 H 0.013 0.987 9 C 0.206 3.794 10 N -0.573 5.573 11 C 0.164 3.836 12 C 0.097 3.903 13 C -0.148 4.148 14 C -0.087 4.087 15 C -0.170 4.170 16 C 0.072 3.928 17 N -0.493 5.493 18 C 0.562 3.438 19 O -0.554 6.554 20 C 0.084 3.916 21 C -0.124 4.124 22 C -0.042 4.042 23 C -0.157 4.157 24 C 0.260 3.740 25 F -0.129 7.129 26 N -0.466 5.466 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.204 0.796 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 -5.092 3.706 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.167 4.167 3 Si 0.748 3.252 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.505 4.505 8 H 0.031 0.969 9 C 0.085 3.915 10 N -0.302 5.302 11 C 0.041 3.959 12 C -0.041 4.041 13 C -0.169 4.169 14 C -0.113 4.113 15 C -0.190 4.190 16 C -0.085 4.085 17 N -0.203 5.203 18 C 0.349 3.651 19 O -0.433 6.433 20 C -0.053 4.053 21 C -0.145 4.145 22 C -0.067 4.067 23 C -0.178 4.178 24 C 0.105 3.895 25 F -0.108 7.108 26 N -0.183 5.183 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.221 0.779 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.381 -5.523 3.497 10.629 hybrid contribution -1.134 1.389 -0.258 1.811 sum 7.248 -4.134 3.239 8.951 Atomic orbital electron populations 1.70051 1.08011 1.27201 1.54016 1.25339 0.94919 1.01634 0.94773 0.86098 0.80148 0.80263 0.78737 1.19134 1.22103 1.17195 1.20944 0.90355 0.91652 1.47554 0.96862 1.20325 0.93832 0.78410 0.98928 1.47887 1.61644 1.15246 1.05393 1.20446 0.93116 0.97182 0.85158 1.21639 0.97959 0.90817 0.93696 1.22091 0.96491 1.00687 0.97611 1.21893 0.95620 0.94905 0.98915 1.22435 1.01420 0.96271 0.98876 1.23166 0.90824 1.00636 0.93869 1.67502 1.18344 1.09691 1.24796 1.18155 0.77722 0.85352 0.83867 1.90715 1.49786 1.15692 1.87115 1.20970 0.99196 0.90059 0.95097 1.22382 0.98735 1.02031 0.91309 1.21970 0.92719 0.92273 0.99712 1.22442 1.00751 0.97484 0.97113 1.18900 0.97284 0.82032 0.91314 1.91579 1.83972 1.38217 1.97040 1.67626 1.10299 1.10171 1.30200 0.93166 0.90382 0.95043 0.88942 0.86609 0.84572 0.82909 0.81871 0.81110 0.81829 0.77908 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.03 1.71 5.47 84.66 0.46 2.18 16 3 Si 0.92 44.12 27.47 68.60 1.88 46.00 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.47 -25.82 8.51 25.60 0.22 -25.60 16 8 H 0.01 0.86 8.06 -2.91 -0.02 0.84 16 9 C 0.21 9.58 3.88 85.63 0.33 9.91 16 10 N -0.57 -24.72 2.46 -833.57 -2.05 -26.77 16 11 C 0.16 6.11 5.73 85.63 0.49 6.60 16 12 C 0.10 3.84 6.36 42.55 0.27 4.11 16 13 C -0.15 -5.44 9.72 22.36 0.22 -5.22 16 14 C -0.09 -2.81 10.18 22.47 0.23 -2.58 16 15 C -0.17 -5.05 10.11 22.36 0.23 -4.83 16 16 C 0.07 2.43 11.18 84.67 0.95 3.38 16 17 N -0.49 -19.98 10.27 -183.89 -1.89 -21.87 16 18 C 0.56 24.52 7.58 86.88 0.66 25.18 16 19 O -0.55 -24.99 15.95 -3.77 -0.06 -25.05 16 20 C 0.08 3.35 6.62 41.88 0.28 3.62 16 21 C -0.12 -3.60 9.63 22.61 0.22 -3.38 16 22 C -0.04 -0.86 10.16 22.43 0.23 -0.64 16 23 C -0.16 -3.88 10.09 22.49 0.23 -3.65 16 24 C 0.26 9.69 8.41 84.87 0.71 10.41 16 25 F -0.13 -5.25 17.29 44.97 0.78 -4.47 16 26 N -0.47 -20.08 5.00 -185.97 -0.93 -21.01 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.08 3.72 4.30 -2.97 -0.01 3.71 16 29 H 0.03 1.36 7.24 -2.38 -0.02 1.35 16 30 H 0.09 3.37 7.47 -2.39 -0.02 3.36 16 31 H 0.12 3.54 7.75 -2.39 -0.02 3.52 16 32 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.16 4.25 7.65 -2.91 -0.02 4.23 16 37 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -79.43 335.91 4.79 -74.64 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.04 Total: 17.77 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 5.72 Total: 19.49 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -4.57 Total: -128.39 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -79.43 4.79 -74.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754424371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.683 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds