Wall clock time and date at job start Fri Apr 10 2020 23:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.50702 * 109.46696 * 119.99611 * 2 1 3 5 5 N 1.27957 * 120.00407 * 0.02562 * 4 2 1 6 6 O 1.41597 * 120.00127 * 179.97438 * 5 4 2 7 7 C 1.35858 * 113.99831 * 179.97438 * 6 5 4 8 8 C 1.38792 * 120.05788 * 90.00016 * 7 6 5 9 9 C 1.38114 * 119.93884 * 179.72279 * 8 7 6 10 10 C 1.38294 * 120.06149 * 0.25614 * 9 8 7 11 11 C 1.38255 * 120.11566 * 0.02562 * 10 9 8 12 12 C 1.38158 * 120.06033 * 359.97427 * 11 10 9 13 13 C 1.50698 * 120.02643 * 180.02562 * 12 11 10 14 14 F 1.39896 * 109.47514 * 359.97438 * 13 12 11 15 15 F 1.39901 * 109.47170 * 120.00279 * 13 12 11 16 16 F 1.39899 * 109.46608 * 239.99737 * 13 12 11 17 17 C 1.52995 * 109.47264 * 239.99690 * 2 1 3 18 18 C 1.50697 * 109.46975 * 59.99941 * 17 2 1 19 19 H 1.07998 * 120.00156 * 0.02562 * 18 17 2 20 20 C 1.37879 * 120.00045 * 179.97438 * 18 17 2 21 21 N 1.31513 * 120.00335 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99955 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47122 * 89.99533 * 22 20 18 24 24 H 1.48503 * 109.47267 * 209.99814 * 22 20 18 25 25 H 1.48505 * 109.47237 * 330.00064 * 22 20 18 26 26 H 1.09001 * 109.47037 * 300.00450 * 1 2 3 27 27 H 1.08996 * 109.46984 * 60.00183 * 1 2 3 28 28 H 1.09003 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47054 * 299.99774 * 3 2 1 31 31 H 1.09001 * 109.47545 * 59.99860 * 3 2 1 32 32 H 1.08005 * 119.99723 * 180.02562 * 4 2 1 33 33 H 1.08002 * 120.03339 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.97036 * 180.23175 * 9 8 7 35 35 H 1.07997 * 119.94132 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.96408 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47163 * 180.02562 * 17 2 1 38 38 H 1.09003 * 109.47325 * 300.00304 * 17 2 1 39 39 H 0.97002 * 120.00192 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.2008 -1.1970 2.0726 6 8 1.6727 -1.8649 3.2285 7 6 0.6867 -2.3321 4.0380 8 6 0.1818 -3.6114 3.8514 9 6 -0.8166 -4.0860 4.6793 10 6 -1.3168 -3.2858 5.6903 11 6 -0.8197 -2.0090 5.8747 12 6 0.1790 -1.5293 5.0493 13 6 0.7208 -0.1377 5.2514 14 9 0.0609 0.4683 6.3258 15 9 2.0913 -0.2057 5.5237 16 9 0.5127 0.6166 4.0916 17 6 2.0401 -0.7213 -1.2492 18 6 1.5377 -0.0110 -2.4796 19 1 0.9172 0.8674 -2.3806 20 6 1.8713 -0.4817 -3.7319 21 7 1.4333 0.1384 -4.8057 22 14 2.9453 -2.0005 -3.9032 23 1 2.0866 -3.2113 -3.9491 24 1 3.7376 -1.9078 -5.1558 25 1 3.8652 -2.0900 -2.7409 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.0941 -0.8087 1.4017 33 1 0.5726 -4.2370 3.0625 34 1 -1.2072 -5.0827 4.5369 35 1 -2.0978 -3.6588 6.3363 36 1 -1.2118 -1.3864 6.6652 37 1 3.1300 -0.7217 -1.2489 38 1 1.6767 -1.7490 -1.2492 39 1 1.6677 -0.1930 -5.6867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755816313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:29 Heat of formation + Delta-G solvation = -111.575920 kcal Electronic energy + Delta-G solvation = -26651.528850 eV Core-core repulsion = 22339.392478 eV Total energy + Delta-G solvation = -4312.136371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.15397 -47.72052 -47.54829 -39.96694 -37.94314 -36.78072 -33.17118 -32.24300 -31.89112 -29.91606 -27.79039 -26.51986 -26.07583 -24.08290 -22.92697 -22.22427 -21.34907 -18.77160 -18.48488 -18.45366 -17.96210 -17.63726 -16.88740 -16.29107 -15.96608 -15.30463 -14.70457 -14.50954 -14.34014 -14.30268 -14.06451 -14.00582 -13.74542 -13.71657 -13.48344 -13.15325 -13.07226 -12.90964 -12.77465 -12.37234 -11.92860 -11.62656 -11.36505 -11.15347 -11.03933 -10.95682 -10.67287 -10.29289 -10.10999 -9.95333 -9.73964 -9.53768 -9.33580 -9.11584 -8.85907 -8.57367 -6.07523 -4.05630 0.51009 0.82159 2.29546 2.58418 2.74036 3.28134 3.36422 3.38505 3.50750 3.65430 3.94738 4.40430 4.41616 4.52188 4.63894 4.75940 4.93505 5.06283 5.11057 5.25662 5.41229 5.61332 5.75674 5.79265 5.81288 5.94946 5.99861 6.09424 6.29493 6.39620 6.49306 6.65135 6.71076 6.85510 6.96757 7.06668 7.12502 7.26141 7.69384 7.77006 8.48103 8.96397 9.53971 11.04966 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.003581 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.331615 B = 7817.052505 C = 8537.290374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.004 4.004 3 C -0.126 4.126 4 C 0.142 3.858 5 N -0.319 5.319 6 O -0.227 6.227 7 C 0.171 3.829 8 C -0.124 4.124 9 C -0.078 4.078 10 C -0.126 4.126 11 C -0.067 4.067 12 C -0.193 4.193 13 C 0.511 3.489 14 F -0.182 7.182 15 F -0.175 7.175 16 F -0.166 7.166 17 C 0.001 3.999 18 C -0.512 4.512 19 H 0.082 0.918 20 C 0.070 3.930 21 N -0.900 5.900 22 Si 0.873 3.127 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.021 0.979 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -5.519 22.094 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.005 4.005 3 C -0.184 4.184 4 C -0.072 4.072 5 N -0.074 5.074 6 O -0.221 6.221 7 C 0.126 3.874 8 C -0.144 4.144 9 C -0.097 4.097 10 C -0.144 4.144 11 C -0.085 4.085 12 C -0.196 4.196 13 C 0.457 3.543 14 F -0.163 7.163 15 F -0.156 7.156 16 F -0.147 7.147 17 C -0.037 4.037 18 C -0.550 4.550 19 H 0.100 0.900 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.701 3.299 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.231 -5.695 22.281 23.383 hybrid contribution 1.568 -0.709 -0.168 1.729 sum -2.662 -6.403 22.113 23.175 Atomic orbital electron populations 1.21667 0.93301 1.01775 1.01244 1.19718 0.97014 0.94917 0.88900 1.21747 1.00645 0.93974 1.02009 1.26958 0.98181 0.89472 0.92543 1.77273 1.25995 1.10006 0.94138 1.88362 1.27893 1.73092 1.32750 1.18004 0.89186 0.91358 0.88866 1.21513 0.96768 0.95571 1.00532 1.21296 0.94766 1.00024 0.93570 1.21183 1.00757 0.93629 0.98873 1.20938 0.93571 0.96390 0.97616 1.20457 1.02544 0.93527 1.03112 1.18117 0.75764 0.86363 0.74060 1.93139 1.80918 1.85353 1.56924 1.93215 1.32137 1.96631 1.93640 1.93280 1.94521 1.78135 1.48758 1.19647 0.96457 0.95625 0.91965 1.21018 1.32133 1.13552 0.88305 0.90041 1.24959 0.95635 0.96655 0.95919 1.69890 1.45693 1.40438 0.97906 0.86884 0.81311 0.84001 0.77704 1.20372 1.21385 1.19069 0.94026 0.90860 0.93153 0.92932 0.89763 0.94127 0.87032 0.84328 0.84567 0.84557 0.84132 0.96028 0.96664 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 7.45 37.16 0.28 -2.04 16 2 C 0.00 -0.07 0.75 -155.66 -0.12 -0.19 16 3 C -0.13 -2.20 8.20 37.16 0.30 -1.90 16 4 C 0.14 2.49 9.72 -13.89 -0.13 2.36 16 5 N -0.32 -5.65 8.97 32.65 0.29 -5.35 16 6 O -0.23 -3.83 10.23 4.47 0.05 -3.78 16 7 C 0.17 2.46 5.88 -39.19 -0.23 2.23 16 8 C -0.12 -1.45 9.99 -39.42 -0.39 -1.84 16 9 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 10 C -0.13 -1.02 10.04 -39.55 -0.40 -1.42 16 11 C -0.07 -0.67 9.43 -39.60 -0.37 -1.04 16 12 C -0.19 -2.54 5.38 -104.47 -0.56 -3.10 16 13 C 0.51 7.21 2.99 36.00 0.11 7.32 16 14 F -0.18 -2.27 15.97 2.25 0.04 -2.23 16 15 F -0.17 -2.61 16.94 2.25 0.04 -2.57 16 16 F -0.17 -2.67 16.04 2.25 0.04 -2.64 16 17 C 0.00 0.03 3.09 -27.89 -0.09 -0.05 16 18 C -0.51 -13.40 8.20 -34.44 -0.28 -13.68 16 19 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 22 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 26 H 0.04 0.73 8.06 -51.93 -0.42 0.32 16 27 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 28 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.61 6.62 -51.93 -0.34 1.26 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 1.11 7.16 -52.49 -0.38 0.73 16 37 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 38 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -29.98 340.99 -5.37 -35.35 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.68 Total: -1.73 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.38 Total: -12.61 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 1.07 Total: -31.18 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: 0.05 Total: -3.78 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.98 -5.37 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755816313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.221 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds