Wall clock time and date at job start Fri Apr 10 2020 23:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.50702 * 109.46696 * 119.99611 * 2 1 3 5 5 N 1.27957 * 120.00407 * 0.02562 * 4 2 1 6 6 O 1.41597 * 120.00127 * 179.97438 * 5 4 2 7 7 C 1.35858 * 113.99831 * 179.97438 * 6 5 4 8 8 C 1.38792 * 120.05788 * 90.00016 * 7 6 5 9 9 C 1.38114 * 119.93884 * 179.72279 * 8 7 6 10 10 C 1.38294 * 120.06149 * 0.25614 * 9 8 7 11 11 C 1.38255 * 120.11566 * 0.02562 * 10 9 8 12 12 C 1.38158 * 120.06033 * 359.97427 * 11 10 9 13 13 C 1.50698 * 120.02643 * 180.02562 * 12 11 10 14 14 F 1.39896 * 109.47514 * 359.97438 * 13 12 11 15 15 F 1.39901 * 109.47170 * 120.00279 * 13 12 11 16 16 F 1.39899 * 109.46608 * 239.99737 * 13 12 11 17 17 C 1.52995 * 109.47264 * 239.99690 * 2 1 3 18 18 C 1.50697 * 109.46975 * 59.99941 * 17 2 1 19 19 H 1.07998 * 120.00156 * 0.02562 * 18 17 2 20 20 C 1.37879 * 120.00045 * 179.97438 * 18 17 2 21 21 N 1.31513 * 120.00335 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99955 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47122 * 89.99533 * 22 20 18 24 24 H 1.48503 * 109.47267 * 209.99814 * 22 20 18 25 25 H 1.48505 * 109.47237 * 330.00064 * 22 20 18 26 26 H 1.09001 * 109.47037 * 300.00450 * 1 2 3 27 27 H 1.08996 * 109.46984 * 60.00183 * 1 2 3 28 28 H 1.09003 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47054 * 299.99774 * 3 2 1 31 31 H 1.09001 * 109.47545 * 59.99860 * 3 2 1 32 32 H 1.08005 * 119.99723 * 180.02562 * 4 2 1 33 33 H 1.08002 * 120.03339 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.97036 * 180.23175 * 9 8 7 35 35 H 1.07997 * 119.94132 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.96408 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47163 * 180.02562 * 17 2 1 38 38 H 1.09003 * 109.47325 * 300.00304 * 17 2 1 39 39 H 0.97002 * 120.00192 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.2008 -1.1970 2.0726 6 8 1.6727 -1.8649 3.2285 7 6 0.6867 -2.3321 4.0380 8 6 0.1818 -3.6114 3.8514 9 6 -0.8166 -4.0860 4.6793 10 6 -1.3168 -3.2858 5.6903 11 6 -0.8197 -2.0090 5.8747 12 6 0.1790 -1.5293 5.0493 13 6 0.7208 -0.1377 5.2514 14 9 0.0609 0.4683 6.3258 15 9 2.0913 -0.2057 5.5237 16 9 0.5127 0.6166 4.0916 17 6 2.0401 -0.7213 -1.2492 18 6 1.5377 -0.0110 -2.4796 19 1 0.9172 0.8674 -2.3806 20 6 1.8713 -0.4817 -3.7319 21 7 1.4333 0.1384 -4.8057 22 14 2.9453 -2.0005 -3.9032 23 1 2.0866 -3.2113 -3.9491 24 1 3.7376 -1.9078 -5.1558 25 1 3.8652 -2.0900 -2.7409 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.0941 -0.8087 1.4017 33 1 0.5726 -4.2370 3.0625 34 1 -1.2072 -5.0827 4.5369 35 1 -2.0978 -3.6588 6.3363 36 1 -1.2118 -1.3864 6.6652 37 1 3.1300 -0.7217 -1.2489 38 1 1.6767 -1.7490 -1.2492 39 1 1.6677 -0.1930 -5.6867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755816313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:28 Heat of formation + Delta-G solvation = -126.721778 kcal Electronic energy + Delta-G solvation = -26652.185624 eV Core-core repulsion = 22339.392478 eV Total energy + Delta-G solvation = -4312.793145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.24331 -48.78050 -48.69858 -40.87737 -39.29467 -38.02702 -34.87539 -33.60043 -33.02801 -30.87307 -29.62317 -28.03443 -27.04056 -25.66879 -23.97618 -23.31588 -22.69020 -19.81618 -19.62069 -19.51190 -19.42013 -18.88549 -18.69213 -17.40756 -16.91853 -16.27373 -16.15922 -15.78998 -15.65343 -15.59301 -15.18225 -15.15290 -15.00836 -14.88069 -14.81420 -14.66344 -14.34087 -14.09330 -13.84533 -13.73881 -13.17452 -12.88334 -12.82581 -12.72921 -12.57148 -12.32813 -12.30386 -11.82281 -11.78533 -11.49965 -11.27392 -11.02280 -10.72692 -10.66543 -10.33701 -9.82402 -8.19743 -6.21078 -0.37839 0.02367 0.95874 1.39148 1.41540 1.51006 1.55919 1.75484 2.41371 2.56068 2.65619 2.94140 3.15470 3.33550 3.64208 3.75148 3.87983 4.01540 4.19617 4.23055 4.26195 4.27736 4.32484 4.66621 4.78864 4.91958 4.97087 5.07008 5.07509 5.14509 5.24357 5.26901 5.29983 5.33542 5.36931 5.49625 5.58278 5.73603 5.79921 6.37625 6.50095 6.85579 7.41325 8.95738 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.003581 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.331615 B = 7817.052505 C = 8537.290374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.001 4.001 3 C -0.121 4.121 4 C 0.137 3.863 5 N -0.329 5.329 6 O -0.232 6.232 7 C 0.127 3.873 8 C -0.134 4.134 9 C -0.069 4.069 10 C -0.108 4.108 11 C -0.069 4.069 12 C -0.209 4.209 13 C 0.507 3.493 14 F -0.173 7.173 15 F -0.184 7.184 16 F -0.182 7.182 17 C 0.005 3.995 18 C -0.505 4.505 19 H 0.054 0.946 20 C 0.010 3.990 21 N -0.949 5.949 22 Si 0.934 3.066 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.246 1.246 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.030 0.970 38 H 0.013 0.987 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 -7.717 24.771 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.002 4.002 3 C -0.179 4.179 4 C -0.077 4.077 5 N -0.082 5.082 6 O -0.229 6.229 7 C 0.082 3.918 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.126 4.126 11 C -0.087 4.087 12 C -0.212 4.212 13 C 0.453 3.547 14 F -0.155 7.155 15 F -0.165 7.165 16 F -0.164 7.164 17 C -0.034 4.034 18 C -0.543 4.543 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.591 5.591 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.169 1.169 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.190 0.810 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.048 0.952 38 H 0.032 0.968 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.671 -7.886 24.975 26.604 hybrid contribution 1.543 -0.043 -0.814 1.745 sum -3.127 -7.929 24.161 25.620 Atomic orbital electron populations 1.21538 0.93694 1.01152 1.00603 1.19517 0.96640 0.95463 0.88602 1.21672 1.01432 0.93132 1.01654 1.26665 0.98885 0.89985 0.92184 1.77091 1.26928 1.09457 0.94737 1.88363 1.29209 1.72990 1.32313 1.18404 0.90924 0.92841 0.89623 1.21697 0.97563 0.94671 1.01420 1.21748 0.93052 1.01516 0.92383 1.21714 1.00305 0.92290 0.98262 1.21315 0.92408 0.97593 0.97373 1.20537 1.03881 0.92763 1.04062 1.18353 0.75537 0.87062 0.73750 1.93145 1.80633 1.85338 1.56360 1.93189 1.32989 1.96701 1.93661 1.93238 1.94590 1.78712 1.49827 1.19551 0.96767 0.95255 0.91808 1.21290 1.30635 1.12510 0.89876 0.92835 1.25789 0.97351 0.99836 0.95712 1.70036 1.47951 1.42612 0.98487 0.85910 0.79869 0.80182 0.78197 1.19978 1.21449 1.16946 0.93005 0.92977 0.93706 0.91637 0.92016 0.92503 0.85444 0.84317 0.80972 0.80357 0.82126 0.95157 0.96835 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 7.45 71.98 0.54 -3.78 16 2 C 0.00 -0.03 0.75 -52.93 -0.04 -0.07 16 3 C -0.12 -4.22 8.20 71.98 0.59 -3.63 16 4 C 0.14 4.68 9.72 88.67 0.86 5.54 16 5 N -0.33 -11.48 8.97 -50.49 -0.45 -11.94 16 6 O -0.23 -7.74 10.23 18.25 0.19 -7.55 16 7 C 0.13 3.52 5.88 22.52 0.13 3.65 16 8 C -0.13 -2.86 9.99 22.37 0.22 -2.63 16 9 C -0.07 -0.93 10.04 22.25 0.22 -0.70 16 10 C -0.11 -1.24 10.04 22.29 0.22 -1.01 16 11 C -0.07 -1.15 9.43 22.25 0.21 -0.95 16 12 C -0.21 -5.21 5.38 -19.76 -0.11 -5.31 16 13 C 0.51 13.99 2.99 71.24 0.21 14.21 16 14 F -0.17 -4.11 15.97 44.97 0.72 -3.40 16 15 F -0.18 -5.47 16.94 44.97 0.76 -4.70 16 16 F -0.18 -5.87 16.04 44.97 0.72 -5.15 16 17 C 0.00 0.20 3.09 29.85 0.09 0.30 16 18 C -0.50 -26.96 8.20 25.60 0.21 -26.75 16 19 H 0.05 3.10 5.92 -2.91 -0.02 3.08 16 20 C 0.01 0.55 5.47 84.66 0.46 1.01 16 21 N -0.95 -57.71 13.96 21.45 0.30 -57.41 16 22 Si 0.93 42.98 27.47 68.60 1.88 44.87 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 26 H 0.05 1.84 8.06 -2.39 -0.02 1.83 16 27 H 0.05 2.18 6.62 -2.39 -0.02 2.17 16 28 H 0.04 1.72 8.06 -2.39 -0.02 1.71 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.42 6.62 -2.39 -0.02 2.41 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.16 1.97 7.16 -2.91 -0.02 1.95 16 37 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 38 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.90 340.99 8.97 -57.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.02 Total: 7.49 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.83 Total: -20.14 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -0.15 Total: -69.35 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.19 Total: -7.55 kcal Atomic # 9 Polarization: -15.45 SS G_CDS: 2.20 Total: -13.25 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -66.90 8.97 -57.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755816313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.797 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds