Wall clock time and date at job start Fri Apr 10 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86810 * 119.99683 * 2 1 4 4 H 1.48496 * 109.47042 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.46821 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47024 * 119.99787 * 3 2 1 7 7 C 1.38648 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00319 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00231 * 185.05757 * 9 7 2 11 11 C 1.38884 * 120.07184 * 354.46468 * 10 9 7 12 12 C 1.38098 * 119.93181 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.07109 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92940 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.46978 * 90.00093 * 14 13 12 16 16 C 1.47845 * 111.00172 * 290.12136 * 15 14 13 17 17 C 1.54899 * 104.89614 * 213.58140 * 16 15 14 18 18 C 1.55440 * 101.52093 * 37.06564 * 17 16 15 19 19 H 1.08997 * 110.68826 * 82.75498 * 18 17 16 20 20 C 1.52997 * 110.84078 * 205.90244 * 18 17 16 21 21 F 1.39902 * 109.46679 * 173.71277 * 20 18 17 22 22 F 1.39891 * 109.47303 * 293.71029 * 20 18 17 23 23 F 1.39902 * 109.47300 * 53.71250 * 20 18 17 24 24 C 1.47444 * 110.99607 * 169.28028 * 15 14 13 25 25 C 1.38305 * 120.13732 * 0.29478 * 13 12 11 26 26 C 1.38103 * 120.06627 * 359.45019 * 25 13 12 27 27 H 0.97001 * 120.00845 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03094 * 0.04579 * 11 10 9 29 29 H 1.07997 * 119.96109 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47251 * 329.99986 * 14 13 12 31 31 H 1.08996 * 109.46669 * 209.99596 * 14 13 12 32 32 H 1.08995 * 110.37312 * 332.47325 * 16 15 14 33 33 H 1.09003 * 110.36969 * 94.69358 * 16 15 14 34 34 H 1.09002 * 110.99266 * 155.21603 * 17 16 15 35 35 H 1.08994 * 110.99224 * 279.03701 * 17 16 15 36 36 H 1.09004 * 109.89013 * 242.65935 * 24 15 14 37 37 H 1.08996 * 109.89493 * 3.69261 * 24 15 14 38 38 H 1.07994 * 119.96519 * 179.71019 * 25 13 12 39 39 H 1.08001 * 120.03057 * 180.26664 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5044 0.1077 11 6 3.4574 -3.4393 0.0953 12 6 4.2026 -4.5969 0.2040 13 6 3.5689 -5.8201 0.3256 14 6 4.3852 -7.0812 0.4446 15 7 4.6564 -7.3571 1.8617 16 6 5.6018 -6.3683 2.4224 17 6 6.4323 -7.1580 3.4646 18 6 6.5790 -8.5377 2.7637 19 1 7.4012 -8.5207 2.0483 20 6 6.7822 -9.6519 3.7923 21 9 6.7673 -10.8922 3.1452 22 9 8.0128 -9.4755 4.4339 23 9 5.7524 -9.6069 4.7382 24 6 5.2275 -8.7050 2.0377 25 6 2.1875 -5.8889 0.3327 26 6 1.4368 -4.7343 0.2297 27 1 -0.4851 0.8400 -0.0004 28 1 3.9528 -2.4843 0.0011 29 1 5.2813 -4.5467 0.1948 30 1 5.3278 -6.9555 -0.0880 31 1 3.8316 -7.9145 0.0118 32 1 6.2501 -5.9763 1.6388 33 1 5.0590 -5.5563 2.9063 34 1 7.4053 -6.6926 3.6223 35 1 5.8898 -7.2535 4.4050 36 1 4.5561 -9.3164 2.6405 37 1 5.3817 -9.1723 1.0651 38 1 1.6956 -6.8460 0.4231 39 1 0.3581 -4.7883 0.2396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761044380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:31 Heat of formation + Delta-G solvation = -152.186849 kcal Electronic energy + Delta-G solvation = -25719.478654 eV Core-core repulsion = 21405.581261 eV Total energy + Delta-G solvation = -4313.897393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.38338 -47.87979 -47.84671 -39.60594 -38.72232 -36.55235 -33.23500 -32.20586 -30.24515 -29.80070 -29.31704 -26.03376 -25.20655 -24.28467 -22.08039 -21.42948 -21.24991 -20.34138 -18.83995 -18.47673 -17.99356 -17.85246 -16.97497 -16.17748 -15.28700 -14.90375 -14.77067 -14.66834 -14.56169 -14.30999 -14.14819 -14.05440 -14.01598 -13.93559 -13.68163 -13.54158 -13.34549 -12.95670 -12.72127 -12.35569 -12.28482 -11.88792 -11.74893 -11.52015 -11.41807 -11.25987 -11.14631 -10.77358 -10.66173 -10.56339 -10.44462 -9.34758 -8.84906 -8.42604 -8.17818 -7.19359 -6.46178 -4.05285 2.21632 2.25155 2.44526 3.11650 3.12581 3.15733 3.44098 3.51525 3.70599 3.91968 3.95728 4.33152 4.39564 4.61863 4.69456 4.92647 5.01002 5.08516 5.15397 5.24319 5.28744 5.38890 5.46318 5.54224 5.68043 5.73438 5.78778 5.84427 5.94083 6.20430 6.40291 6.68980 6.79423 6.87515 6.96330 7.06344 7.25254 7.37636 7.43268 7.81960 7.98567 8.99268 9.69604 10.71765 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002479 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.312317 B =11290.945747 C =11804.079909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.064 4.064 13 C -0.181 4.181 14 C 0.108 3.892 15 N -0.517 5.517 16 C 0.049 3.951 17 C -0.124 4.124 18 C -0.162 4.162 19 H 0.118 0.882 20 C 0.462 3.538 21 F -0.184 7.184 22 F -0.185 7.185 23 F -0.177 7.177 24 C 0.050 3.950 25 C -0.052 4.052 26 C -0.194 4.194 27 H 0.271 0.729 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.281 -16.615 4.819 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.083 4.083 13 C -0.182 4.182 14 C -0.019 4.019 15 N -0.241 5.241 16 C -0.078 4.078 17 C -0.162 4.162 18 C -0.183 4.183 19 H 0.136 0.864 20 C 0.407 3.593 21 F -0.166 7.166 22 F -0.166 7.166 23 F -0.159 7.159 24 C -0.078 4.078 25 C -0.071 4.071 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.354 -16.383 5.062 21.734 hybrid contribution 1.377 0.577 -0.260 1.515 sum 14.731 -15.806 4.801 22.133 Atomic orbital electron populations 1.70022 1.05967 1.27809 1.45940 1.25281 0.95826 0.98821 0.96535 0.85794 0.78720 0.79828 0.79165 1.19527 1.20263 1.19487 1.21269 0.91741 0.80854 1.53016 0.89153 1.83979 1.34371 1.11472 1.78248 1.19401 0.90280 0.88050 0.92028 1.21108 0.93826 0.98766 1.11717 1.20563 0.97881 0.91911 0.97907 1.19001 0.93575 0.93236 1.12417 1.21046 0.97660 0.96464 0.86736 1.63730 1.42427 1.00249 1.17723 1.23045 0.92965 0.95648 0.96125 1.22911 1.01674 0.91772 0.99803 1.23848 1.03125 0.94248 0.97062 0.86385 1.20345 0.73740 0.83120 0.82055 1.93187 1.96210 1.45945 1.81240 1.93181 1.44555 1.95335 1.83526 1.93193 1.59207 1.96449 1.67027 1.22856 0.91343 0.93432 1.00187 1.20451 0.92796 0.96689 0.97133 1.20221 0.99588 0.90339 1.11201 0.91940 0.85690 0.88058 0.94609 0.90623 0.92948 0.88934 0.89480 0.89211 0.89579 0.91319 0.87084 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.86 9.49 30.88 0.29 -10.57 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 9 O -0.18 -5.03 9.76 0.06 0.00 -5.03 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.23 -4.95 9.17 -39.39 -0.36 -5.31 16 12 C -0.06 -1.10 8.94 -39.61 -0.35 -1.46 16 13 C -0.18 -2.92 5.11 -104.57 -0.53 -3.45 16 14 C 0.11 1.34 4.73 -4.98 -0.02 1.31 16 15 N -0.52 -6.08 5.15 -232.70 -1.20 -7.28 16 16 C 0.05 0.53 5.62 -2.30 -0.01 0.52 16 17 C -0.12 -1.06 6.42 -24.43 -0.16 -1.22 16 18 C -0.16 -1.31 2.95 -88.63 -0.26 -1.57 16 19 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.46 4.17 2.68 37.16 0.10 4.27 16 21 F -0.18 -1.75 17.08 2.25 0.04 -1.71 16 22 F -0.18 -1.75 17.22 2.25 0.04 -1.71 16 23 F -0.18 -1.83 15.80 2.25 0.04 -1.80 16 24 C 0.05 0.47 6.18 -2.83 -0.02 0.45 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 C -0.19 -4.05 9.99 -39.39 -0.39 -4.44 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 29 H 0.10 1.48 7.52 -52.49 -0.39 1.09 16 30 H 0.04 0.41 7.77 -51.93 -0.40 0.00 16 31 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 32 H 0.05 0.54 7.03 -51.93 -0.37 0.17 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.83 7.34 -51.93 -0.38 0.45 16 36 H 0.09 0.84 7.36 -51.93 -0.38 0.46 16 37 H 0.07 0.56 7.54 -51.93 -0.39 0.17 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -30.02 334.88 -7.31 -37.34 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.55 Total: 2.60 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.46 Total: -18.31 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: -0.44 Total: -31.70 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.02 -7.31 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761044380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.848 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds