Wall clock time and date at job start Fri Apr 10 2020 23:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86810 * 119.99683 * 2 1 4 4 H 1.48496 * 109.47042 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.46821 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47024 * 119.99787 * 3 2 1 7 7 C 1.38648 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00319 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00231 * 185.05757 * 9 7 2 11 11 C 1.38884 * 120.07184 * 354.46468 * 10 9 7 12 12 C 1.38098 * 119.93181 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.07109 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92940 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.46978 * 90.00093 * 14 13 12 16 16 C 1.47845 * 111.00172 * 290.12136 * 15 14 13 17 17 C 1.54899 * 104.89614 * 213.58140 * 16 15 14 18 18 C 1.55440 * 101.52093 * 37.06564 * 17 16 15 19 19 H 1.08997 * 110.68826 * 82.75498 * 18 17 16 20 20 C 1.52997 * 110.84078 * 205.90244 * 18 17 16 21 21 F 1.39902 * 109.46679 * 173.71277 * 20 18 17 22 22 F 1.39891 * 109.47303 * 293.71029 * 20 18 17 23 23 F 1.39902 * 109.47300 * 53.71250 * 20 18 17 24 24 C 1.47444 * 110.99607 * 169.28028 * 15 14 13 25 25 C 1.38305 * 120.13732 * 0.29478 * 13 12 11 26 26 C 1.38103 * 120.06627 * 359.45019 * 25 13 12 27 27 H 0.97001 * 120.00845 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03094 * 0.04579 * 11 10 9 29 29 H 1.07997 * 119.96109 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47251 * 329.99986 * 14 13 12 31 31 H 1.08996 * 109.46669 * 209.99596 * 14 13 12 32 32 H 1.08995 * 110.37312 * 332.47325 * 16 15 14 33 33 H 1.09003 * 110.36969 * 94.69358 * 16 15 14 34 34 H 1.09002 * 110.99266 * 155.21603 * 17 16 15 35 35 H 1.08994 * 110.99224 * 279.03701 * 17 16 15 36 36 H 1.09004 * 109.89013 * 242.65935 * 24 15 14 37 37 H 1.08996 * 109.89493 * 3.69261 * 24 15 14 38 38 H 1.07994 * 119.96519 * 179.71019 * 25 13 12 39 39 H 1.08001 * 120.03057 * 180.26664 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5044 0.1077 11 6 3.4574 -3.4393 0.0953 12 6 4.2026 -4.5969 0.2040 13 6 3.5689 -5.8201 0.3256 14 6 4.3852 -7.0812 0.4446 15 7 4.6564 -7.3571 1.8617 16 6 5.6018 -6.3683 2.4224 17 6 6.4323 -7.1580 3.4646 18 6 6.5790 -8.5377 2.7637 19 1 7.4012 -8.5207 2.0483 20 6 6.7822 -9.6519 3.7923 21 9 6.7673 -10.8922 3.1452 22 9 8.0128 -9.4755 4.4339 23 9 5.7524 -9.6069 4.7382 24 6 5.2275 -8.7050 2.0377 25 6 2.1875 -5.8889 0.3327 26 6 1.4368 -4.7343 0.2297 27 1 -0.4851 0.8400 -0.0004 28 1 3.9528 -2.4843 0.0011 29 1 5.2813 -4.5467 0.1948 30 1 5.3278 -6.9555 -0.0880 31 1 3.8316 -7.9145 0.0118 32 1 6.2501 -5.9763 1.6388 33 1 5.0590 -5.5563 2.9063 34 1 7.4053 -6.6926 3.6223 35 1 5.8898 -7.2535 4.4050 36 1 4.5561 -9.3164 2.6405 37 1 5.3817 -9.1723 1.0651 38 1 1.6956 -6.8460 0.4231 39 1 0.3581 -4.7883 0.2396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761044380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:30 Heat of formation + Delta-G solvation = -170.503365 kcal Electronic energy + Delta-G solvation = -25720.272918 eV Core-core repulsion = 21405.581261 eV Total energy + Delta-G solvation = -4314.691657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.09951 -48.59057 -48.58333 -40.90198 -39.99840 -38.14139 -34.52510 -33.87654 -31.77699 -30.83440 -30.38558 -27.61968 -26.49372 -25.31200 -23.61785 -22.51490 -22.01287 -21.61215 -19.81540 -19.55209 -19.19488 -18.77706 -18.56748 -17.11430 -16.44343 -16.37439 -16.12430 -15.63246 -15.51492 -15.43381 -15.32714 -15.16800 -15.01006 -14.79571 -14.74656 -14.71328 -14.36527 -14.28550 -14.01449 -13.63653 -13.51223 -13.21841 -12.92471 -12.59680 -12.52265 -12.33934 -12.20937 -12.15713 -12.11987 -11.89302 -11.84587 -11.13583 -10.77307 -9.73335 -9.29846 -8.86422 -8.45631 -6.13904 0.64488 0.71098 1.35417 1.46202 1.51845 1.75386 2.18853 2.70575 2.81270 2.83504 3.03023 3.08246 3.34277 3.55980 3.64097 3.73301 4.00776 4.05635 4.09414 4.23563 4.28564 4.31499 4.40001 4.60685 4.66452 4.73616 4.82026 4.84569 4.86407 5.04041 5.07040 5.12244 5.17098 5.34703 5.60454 5.74640 5.81134 6.02575 6.05235 6.08104 6.28166 6.99102 7.81234 8.77661 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002479 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.312317 B =11290.945747 C =11804.079909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.235 6.235 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.058 4.058 13 C -0.153 4.153 14 C 0.110 3.890 15 N -0.536 5.536 16 C 0.046 3.954 17 C -0.119 4.119 18 C -0.152 4.152 19 H 0.143 0.857 20 C 0.462 3.538 21 F -0.186 7.186 22 F -0.187 7.187 23 F -0.188 7.188 24 C 0.051 3.949 25 C -0.049 4.049 26 C -0.208 4.208 27 H 0.272 0.728 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.626 -18.625 4.723 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.017 4.017 15 N -0.261 5.261 16 C -0.081 4.081 17 C -0.157 4.157 18 C -0.172 4.172 19 H 0.161 0.839 20 C 0.408 3.592 21 F -0.168 7.168 22 F -0.168 7.168 23 F -0.170 7.170 24 C -0.077 4.077 25 C -0.067 4.067 26 C -0.228 4.228 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.161 0.839 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.737 -18.459 4.973 25.409 hybrid contribution 0.462 0.797 -0.169 0.937 sum 17.199 -17.662 4.804 25.116 Atomic orbital electron populations 1.70178 1.08082 1.28832 1.49026 1.26592 0.96825 1.02779 0.95919 0.84660 0.77398 0.74277 0.79961 1.18063 1.19748 1.18125 1.21783 0.92505 0.81469 1.53164 0.88067 1.83942 1.36054 1.12646 1.81525 1.19949 0.91738 0.87845 0.94184 1.21225 0.92961 1.00077 1.11979 1.20926 0.99547 0.90885 0.96307 1.19565 0.93468 0.94777 1.07575 1.21075 0.98228 0.94609 0.87806 1.63562 1.43814 1.01669 1.17008 1.23031 0.92972 0.95214 0.96894 1.22867 1.02112 0.91970 0.98743 1.23833 1.03369 0.93165 0.96876 0.83923 1.20497 0.73350 0.83348 0.82009 1.93185 1.96195 1.46215 1.81192 1.93179 1.44678 1.95342 1.83647 1.93177 1.59715 1.96500 1.67574 1.22839 0.91672 0.91842 1.01323 1.20845 0.93581 0.96627 0.95679 1.20461 0.99826 0.90782 1.11685 0.91881 0.86502 0.84407 0.92309 0.88817 0.91707 0.91318 0.87598 0.90304 0.90274 0.89310 0.83899 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.07 13.67 21.61 0.30 -56.77 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.41 -24.09 9.49 67.92 0.64 -23.44 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -14.24 9.76 -22.70 -0.22 -14.46 16 10 C 0.11 5.62 6.65 22.58 0.15 5.77 16 11 C -0.24 -10.31 9.17 22.39 0.21 -10.11 16 12 C -0.06 -1.87 8.94 22.25 0.20 -1.67 16 13 C -0.15 -4.42 5.11 -19.83 -0.10 -4.53 16 14 C 0.11 2.17 4.73 85.56 0.40 2.58 16 15 N -0.54 -10.45 5.15 -890.12 -4.58 -15.03 16 16 C 0.05 0.84 5.62 86.77 0.49 1.32 16 17 C -0.12 -1.65 6.42 32.08 0.21 -1.45 16 18 C -0.15 -1.85 2.95 -9.51 -0.03 -1.88 16 19 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 20 C 0.46 7.03 2.68 71.98 0.19 7.22 16 21 F -0.19 -3.00 17.08 44.97 0.77 -2.23 16 22 F -0.19 -3.04 17.22 44.97 0.77 -2.27 16 23 F -0.19 -3.53 15.80 44.97 0.71 -2.82 16 24 C 0.05 0.74 6.18 86.65 0.54 1.27 16 25 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 26 C -0.21 -8.90 9.99 22.39 0.22 -8.67 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 29 H 0.14 3.43 7.52 -2.91 -0.02 3.41 16 30 H 0.06 0.96 7.77 -2.39 -0.02 0.95 16 31 H 0.09 1.60 7.95 -2.39 -0.02 1.58 16 32 H 0.06 1.02 7.03 -2.39 -0.02 1.00 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.29 7.34 -2.39 -0.02 1.27 16 36 H 0.08 1.29 7.36 -2.39 -0.02 1.27 16 37 H 0.09 0.97 7.54 -2.39 -0.02 0.95 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -70.81 334.88 4.66 -66.15 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.08 Total: 18.56 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.80 Total: -35.87 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -4.29 Total: -71.81 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 2.25 Total: -7.31 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.81 4.66 -66.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761044380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.350 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds