Wall clock time and date at job start Fri Apr 10 2020 23:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47476 * 299.99946 * 3 2 1 6 6 H 1.48508 * 109.47228 * 60.00248 * 3 2 1 7 7 C 1.38657 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99577 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99771 * 185.05463 * 9 7 2 11 11 C 1.38875 * 120.07117 * 354.47161 * 10 9 7 12 12 C 1.38100 * 119.92811 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07292 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93203 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46952 * 90.00545 * 14 13 12 16 16 C 1.47896 * 111.00272 * 69.87382 * 15 14 13 17 17 C 1.53993 * 107.22424 * 214.25946 * 16 15 14 18 18 C 1.54597 * 105.14061 * 1.11809 * 17 16 15 19 19 H 1.08991 * 110.72572 * 263.42188 * 18 17 16 20 20 C 1.53005 * 110.71966 * 140.31688 * 18 17 16 21 21 F 1.39905 * 109.47259 * 61.45882 * 20 18 17 22 22 F 1.39897 * 109.47048 * 181.45529 * 20 18 17 23 23 F 1.39902 * 109.47368 * 301.45901 * 20 18 17 24 24 C 1.48811 * 111.18507 * 312.53282 * 15 14 13 25 25 C 1.38304 * 120.13395 * 0.23352 * 13 12 11 26 26 C 1.38096 * 120.07107 * 359.48747 * 25 13 12 27 27 H 0.97006 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03544 * 359.95365 * 11 10 9 29 29 H 1.08001 * 119.96189 * 179.97438 * 12 11 10 30 30 H 1.08997 * 109.47581 * 330.00635 * 14 13 12 31 31 H 1.08999 * 109.47267 * 210.00163 * 14 13 12 32 32 H 1.08993 * 109.91840 * 94.80423 * 16 15 14 33 33 H 1.08997 * 109.91306 * 333.70539 * 16 15 14 34 34 H 1.08994 * 110.31182 * 120.04107 * 17 16 15 35 35 H 1.09007 * 110.30536 * 242.20862 * 17 16 15 36 36 H 1.09001 * 110.51602 * 41.07101 * 24 15 14 37 37 H 1.09003 * 110.84494 * 278.09726 * 24 15 14 38 38 H 1.08001 * 119.96051 * 179.72020 * 25 13 12 39 39 H 1.07996 * 120.03275 * 180.25088 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4395 0.0921 12 6 4.2022 -4.5971 0.2007 13 6 3.5685 -5.8204 0.3222 14 6 4.3848 -7.0816 0.4399 15 7 4.6569 -7.3583 1.8567 16 6 3.4235 -7.7664 2.5635 17 6 3.5175 -7.2168 3.9990 18 6 4.8600 -6.4520 4.0514 19 1 5.6460 -7.0806 4.4697 20 6 4.7158 -5.1600 4.8584 21 9 4.3520 -5.4697 6.1734 22 9 5.9347 -4.4735 4.8612 23 9 3.7287 -4.3557 4.2786 24 6 5.1386 -6.1385 2.5600 25 6 2.1872 -5.8890 0.3304 26 6 1.4365 -4.7345 0.2280 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4847 -0.0034 29 1 5.2810 -4.5472 0.1899 30 1 5.3271 -6.9557 -0.0932 31 1 3.8309 -7.9146 0.0069 32 1 3.3511 -8.8537 2.5862 33 1 2.5518 -7.3467 2.0616 34 1 2.6878 -6.5391 4.1997 35 1 3.5205 -8.0359 4.7182 36 1 4.5731 -5.2638 2.2384 37 1 6.2050 -5.9890 2.3909 38 1 1.6953 -6.8462 0.4208 39 1 0.3579 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761044381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:33 Heat of formation + Delta-G solvation = -148.804014 kcal Electronic energy + Delta-G solvation = -27150.699948 eV Core-core repulsion = 22836.949245 eV Total energy + Delta-G solvation = -4313.750703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.06421 -47.58362 -47.50203 -39.89957 -38.55163 -36.44586 -33.22409 -32.22830 -30.54595 -29.59191 -28.85736 -26.12320 -25.39466 -24.09564 -22.16093 -21.45401 -20.85695 -20.22822 -18.52515 -18.20104 -18.04840 -17.58996 -17.00144 -16.03975 -15.07985 -14.82356 -14.75306 -14.50733 -14.48155 -14.24845 -14.12031 -13.95637 -13.72654 -13.68121 -13.61975 -13.60160 -13.21948 -12.79931 -12.46383 -12.43204 -11.80703 -11.76911 -11.67231 -11.38147 -11.30372 -11.21206 -10.96725 -10.92742 -10.76930 -10.61663 -10.45655 -9.39841 -8.88233 -8.43350 -8.24145 -7.26721 -6.50348 -4.09045 2.11147 2.17477 2.72516 3.09359 3.11513 3.16828 3.69976 3.79681 3.92698 3.99788 4.20699 4.49681 4.57550 4.66614 4.87251 5.03817 5.16340 5.17511 5.21686 5.29144 5.35453 5.56891 5.60070 5.68445 5.76034 5.80217 5.86563 5.93400 6.03219 6.12959 6.30049 6.60171 6.71234 6.81870 6.92828 7.00733 7.16926 7.28097 7.37105 7.72999 7.94426 8.95351 9.63848 10.67451 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004463 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.789652 B = 6271.964944 C = 7388.058776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.158 3.842 11 C -0.232 4.232 12 C -0.059 4.059 13 C -0.227 4.227 14 C 0.099 3.901 15 N -0.505 5.505 16 C 0.028 3.972 17 C -0.122 4.122 18 C -0.140 4.140 19 H 0.122 0.878 20 C 0.455 3.545 21 F -0.187 7.187 22 F -0.184 7.184 23 F -0.172 7.172 24 C 0.028 3.972 25 C -0.064 4.064 26 C -0.193 4.193 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -13.830 6.715 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.078 4.078 13 C -0.229 4.229 14 C -0.028 4.028 15 N -0.228 5.228 16 C -0.100 4.100 17 C -0.160 4.160 18 C -0.160 4.160 19 H 0.140 0.860 20 C 0.401 3.599 21 F -0.168 7.168 22 F -0.166 7.166 23 F -0.153 7.153 24 C -0.100 4.100 25 C -0.083 4.083 26 C -0.212 4.212 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.435 -14.011 6.703 18.172 hybrid contribution -0.157 1.808 0.148 1.820 sum 9.278 -12.203 6.851 16.791 Atomic orbital electron populations 1.70046 1.05986 1.27676 1.45792 1.25303 0.95852 0.98887 0.96418 0.85648 0.79184 0.80303 0.78325 1.19047 1.20064 1.20054 1.21383 0.91837 0.80741 1.52829 0.88974 1.83975 1.34455 1.11529 1.77839 1.19395 0.90286 0.88056 0.91878 1.21160 0.93836 0.98946 1.11222 1.20614 0.98208 0.91875 0.97124 1.19818 0.94127 0.95266 1.13702 1.21074 0.98798 0.94362 0.88568 1.65284 1.26448 1.28368 1.02650 1.22948 0.93664 1.00777 0.92619 1.22429 0.94995 1.00160 0.98456 1.23374 1.02551 0.92518 0.97606 0.86030 1.20478 0.73897 0.87125 0.78410 1.93167 1.91814 1.93036 1.38797 1.93176 1.44876 1.82090 1.96445 1.93261 1.62420 1.75772 1.83896 1.23524 1.02268 0.95265 0.88894 1.20500 0.92873 0.96562 0.98353 1.20208 0.99560 0.90404 1.11068 0.91987 0.85537 0.87592 0.90365 0.90516 0.90161 0.91638 0.90223 0.89832 0.89638 0.89257 0.87204 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -4.96 9.76 0.07 0.00 -4.96 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.23 -4.92 9.17 -39.40 -0.36 -5.28 16 12 C -0.06 -1.03 7.49 -39.61 -0.30 -1.33 16 13 C -0.23 -3.56 3.96 -104.58 -0.41 -3.97 16 14 C 0.10 1.23 5.70 -4.98 -0.03 1.21 16 15 N -0.51 -5.98 5.54 -231.66 -1.28 -7.26 16 16 C 0.03 0.30 6.45 -2.76 -0.02 0.29 16 17 C -0.12 -1.28 6.25 -25.37 -0.16 -1.44 16 18 C -0.14 -1.54 3.07 -88.76 -0.27 -1.81 16 19 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.46 5.93 2.69 37.16 0.10 6.03 16 21 F -0.19 -2.38 17.12 2.25 0.04 -2.34 16 22 F -0.18 -2.48 17.20 2.25 0.04 -2.44 16 23 F -0.17 -2.78 15.78 2.25 0.04 -2.75 16 24 C 0.03 0.35 5.38 -1.75 -0.01 0.34 16 25 C -0.06 -1.07 8.18 -39.61 -0.32 -1.40 16 26 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.80 4.87 -51.93 -0.25 0.54 16 34 H 0.08 0.93 7.35 -51.93 -0.38 0.55 16 35 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.09 1.29 4.08 -51.93 -0.21 1.08 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 1.53 7.18 -52.49 -0.38 1.15 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -29.95 327.32 -7.04 -37.00 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.30 Total: 4.51 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.24 Total: -17.82 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: -0.53 Total: -31.63 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.11 Total: -7.53 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.95 -7.04 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761044381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.808 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds