Wall clock time and date at job start Fri Apr 10 2020 23:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47476 * 299.99946 * 3 2 1 6 6 H 1.48508 * 109.47228 * 60.00248 * 3 2 1 7 7 C 1.38657 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99577 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99771 * 185.05463 * 9 7 2 11 11 C 1.38875 * 120.07117 * 354.47161 * 10 9 7 12 12 C 1.38100 * 119.92811 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07292 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93203 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46952 * 90.00545 * 14 13 12 16 16 C 1.47896 * 111.00272 * 69.87382 * 15 14 13 17 17 C 1.53993 * 107.22424 * 214.25946 * 16 15 14 18 18 C 1.54597 * 105.14061 * 1.11809 * 17 16 15 19 19 H 1.08991 * 110.72572 * 263.42188 * 18 17 16 20 20 C 1.53005 * 110.71966 * 140.31688 * 18 17 16 21 21 F 1.39905 * 109.47259 * 61.45882 * 20 18 17 22 22 F 1.39897 * 109.47048 * 181.45529 * 20 18 17 23 23 F 1.39902 * 109.47368 * 301.45901 * 20 18 17 24 24 C 1.48811 * 111.18507 * 312.53282 * 15 14 13 25 25 C 1.38304 * 120.13395 * 0.23352 * 13 12 11 26 26 C 1.38096 * 120.07107 * 359.48747 * 25 13 12 27 27 H 0.97006 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03544 * 359.95365 * 11 10 9 29 29 H 1.08001 * 119.96189 * 179.97438 * 12 11 10 30 30 H 1.08997 * 109.47581 * 330.00635 * 14 13 12 31 31 H 1.08999 * 109.47267 * 210.00163 * 14 13 12 32 32 H 1.08993 * 109.91840 * 94.80423 * 16 15 14 33 33 H 1.08997 * 109.91306 * 333.70539 * 16 15 14 34 34 H 1.08994 * 110.31182 * 120.04107 * 17 16 15 35 35 H 1.09007 * 110.30536 * 242.20862 * 17 16 15 36 36 H 1.09001 * 110.51602 * 41.07101 * 24 15 14 37 37 H 1.09003 * 110.84494 * 278.09726 * 24 15 14 38 38 H 1.08001 * 119.96051 * 179.72020 * 25 13 12 39 39 H 1.07996 * 120.03275 * 180.25088 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4395 0.0921 12 6 4.2022 -4.5971 0.2007 13 6 3.5685 -5.8204 0.3222 14 6 4.3848 -7.0816 0.4399 15 7 4.6569 -7.3583 1.8567 16 6 3.4235 -7.7664 2.5635 17 6 3.5175 -7.2168 3.9990 18 6 4.8600 -6.4520 4.0514 19 1 5.6460 -7.0806 4.4697 20 6 4.7158 -5.1600 4.8584 21 9 4.3520 -5.4697 6.1734 22 9 5.9347 -4.4735 4.8612 23 9 3.7287 -4.3557 4.2786 24 6 5.1386 -6.1385 2.5600 25 6 2.1872 -5.8890 0.3304 26 6 1.4365 -4.7345 0.2280 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4847 -0.0034 29 1 5.2810 -4.5472 0.1899 30 1 5.3271 -6.9557 -0.0932 31 1 3.8309 -7.9146 0.0069 32 1 3.3511 -8.8537 2.5862 33 1 2.5518 -7.3467 2.0616 34 1 2.6878 -6.5391 4.1997 35 1 3.5205 -8.0359 4.7182 36 1 4.5731 -5.2638 2.2384 37 1 6.2050 -5.9890 2.3909 38 1 1.6953 -6.8462 0.4208 39 1 0.3579 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761044381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:32 Heat of formation + Delta-G solvation = -167.829959 kcal Electronic energy + Delta-G solvation = -27151.524975 eV Core-core repulsion = 22836.949245 eV Total energy + Delta-G solvation = -4314.575730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.14133 -48.64568 -48.62464 -41.22779 -40.00069 -37.97933 -34.58819 -33.95076 -32.02017 -30.81290 -30.02450 -27.63547 -26.93535 -25.24172 -23.70637 -22.72248 -21.84193 -21.47160 -19.88784 -19.57835 -19.25475 -18.82341 -18.60791 -17.08033 -16.47815 -16.29450 -16.16464 -15.92946 -15.55207 -15.46709 -15.41942 -15.18719 -15.08935 -15.05649 -14.82385 -14.75302 -14.49538 -14.36106 -13.84970 -13.67542 -13.38683 -12.98601 -12.80106 -12.65178 -12.47747 -12.37399 -12.32019 -12.27429 -12.13413 -12.02497 -11.69487 -11.20323 -10.82671 -9.78590 -9.44169 -8.94666 -8.50887 -6.18832 0.54652 0.62578 1.31684 1.39813 1.49759 1.72859 2.14192 2.68902 2.77654 2.84556 3.01693 3.10630 3.31610 3.49304 3.65191 3.70398 4.00215 4.01972 4.09577 4.16294 4.30702 4.34413 4.44689 4.54489 4.71478 4.73036 4.82534 4.89980 4.94383 4.99354 5.07499 5.11123 5.17941 5.25155 5.52324 5.62967 5.68324 5.89153 5.98999 6.00314 6.18336 6.94131 7.74658 8.72531 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004463 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.789652 B = 6271.964944 C = 7388.058776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.099 0.901 9 O -0.233 6.233 10 C 0.116 3.884 11 C -0.244 4.244 12 C -0.055 4.055 13 C -0.194 4.194 14 C 0.100 3.900 15 N -0.493 5.493 16 C 0.024 3.976 17 C -0.123 4.123 18 C -0.131 4.131 19 H 0.151 0.849 20 C 0.451 3.549 21 F -0.186 7.186 22 F -0.188 7.188 23 F -0.197 7.197 24 C 0.023 3.977 25 C -0.055 4.055 26 C -0.207 4.207 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 -16.909 7.201 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.263 4.263 12 C -0.074 4.074 13 C -0.196 4.196 14 C -0.027 4.027 15 N -0.215 5.215 16 C -0.103 4.103 17 C -0.161 4.161 18 C -0.151 4.151 19 H 0.169 0.831 20 C 0.396 3.604 21 F -0.167 7.167 22 F -0.169 7.169 23 F -0.179 7.179 24 C -0.105 4.105 25 C -0.073 4.073 26 C -0.226 4.226 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.280 -17.153 7.194 22.288 hybrid contribution -0.889 2.372 0.086 2.535 sum 11.390 -14.780 7.280 20.030 Atomic orbital electron populations 1.70185 1.07977 1.28737 1.48898 1.26566 0.96852 1.02682 0.95871 0.84565 0.78229 0.74976 0.78678 1.17588 1.19028 1.19394 1.21820 0.92395 0.81467 1.53129 0.88322 1.83937 1.36027 1.12649 1.81308 1.19961 0.91623 0.87978 0.93895 1.21231 0.93127 1.00050 1.11881 1.20956 0.99604 0.91112 0.95692 1.20388 0.94095 0.96451 1.08673 1.21254 0.99232 0.92754 0.89473 1.65347 1.26669 1.27416 1.02091 1.23077 0.92554 1.02318 0.92370 1.22484 0.93938 1.00557 0.99158 1.23437 1.03794 0.91419 0.96424 0.83121 1.20897 0.73141 0.87634 0.78692 1.93166 1.91797 1.92942 1.38804 1.93166 1.44913 1.82392 1.96476 1.93218 1.63560 1.76724 1.84349 1.23542 1.02736 0.94249 0.89930 1.20931 0.93399 0.96654 0.96309 1.20473 0.99880 0.90764 1.11502 0.91814 0.86855 0.84537 0.88637 0.88169 0.87507 0.93001 0.92190 0.87092 0.92732 0.87777 0.83369 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.18 13.67 21.61 0.30 -56.88 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 3 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.41 -24.41 9.49 67.92 0.64 -23.76 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.21 9.76 -22.68 -0.22 -14.43 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -10.60 9.17 22.39 0.21 -10.39 16 12 C -0.06 -1.81 7.49 22.25 0.17 -1.65 16 13 C -0.19 -5.48 3.96 -19.84 -0.08 -5.56 16 14 C 0.10 1.97 5.70 85.55 0.49 2.46 16 15 N -0.49 -9.23 5.54 -886.85 -4.92 -14.14 16 16 C 0.02 0.42 6.45 86.45 0.56 0.98 16 17 C -0.12 -2.16 6.25 31.47 0.20 -1.96 16 18 C -0.13 -2.44 3.07 -9.59 -0.03 -2.47 16 19 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 20 C 0.45 11.08 2.69 71.98 0.19 11.28 16 21 F -0.19 -4.46 17.12 44.97 0.77 -3.69 16 22 F -0.19 -4.78 17.20 44.97 0.77 -4.01 16 23 F -0.20 -6.41 15.78 44.97 0.71 -5.70 16 24 C 0.02 0.50 5.38 86.59 0.47 0.96 16 25 C -0.05 -1.71 8.18 22.25 0.18 -1.53 16 26 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 27 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 28 H 0.11 5.13 5.64 -2.91 -0.02 5.11 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 31 H 0.10 1.63 8.02 -2.39 -0.02 1.61 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.05 4.87 -2.39 -0.01 1.04 16 34 H 0.06 1.31 7.35 -2.39 -0.02 1.29 16 35 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.05 1.52 4.08 -2.39 -0.01 1.51 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.15 3.54 7.18 -2.91 -0.02 3.52 16 39 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -71.77 327.32 4.37 -67.40 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.10 Total: 20.72 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.83 Total: -34.99 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -4.62 Total: -71.03 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.22 Total: -14.43 kcal Atomic # 9 Polarization: -15.65 SS G_CDS: 2.25 Total: -13.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.77 4.37 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761044381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.430 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds