Wall clock time and date at job start Fri Apr 10 2020 23:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47103 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47010 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47375 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.47295 * 60.00137 * 22 21 20 24 24 F 1.39900 * 109.47606 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.47296 * 300.00455 * 22 21 20 26 26 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 27 27 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 31 31 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 32 32 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 33 33 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 34 34 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 35 35 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 36 36 H 1.08992 * 109.47355 * 299.99774 * 20 19 18 37 37 H 1.09003 * 109.47571 * 60.00046 * 20 19 18 38 38 H 1.09001 * 109.47065 * 300.00007 * 21 20 19 39 39 H 1.08998 * 109.46830 * 60.00268 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7700 -3.9356 -1.4474 21 6 9.1408 -3.9018 -0.7685 22 6 10.2376 -4.0302 -1.8274 23 9 10.1391 -2.9677 -2.7322 24 9 11.4910 -3.9999 -1.2067 25 9 10.0858 -5.2410 -2.5118 26 1 -0.4849 -0.8357 -0.0852 27 1 0.0691 -1.3040 1.8430 28 1 -0.9698 -3.3393 2.7431 29 1 -0.2416 -5.5537 1.9556 30 1 1.5304 -5.7534 0.2610 31 1 2.7709 -4.7177 -1.4995 32 1 2.8121 -2.9465 -1.6708 33 1 5.2988 -3.9312 -2.0021 34 1 6.7917 -2.8647 0.1451 35 1 6.7498 -4.6358 0.3162 36 1 7.6517 -4.8785 -1.9811 37 1 7.6934 -3.1072 -2.1518 38 1 9.2589 -2.9586 -0.2351 39 1 9.2178 -4.7299 -0.0640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776975271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:34 Heat of formation + Delta-G solvation = -219.053901 kcal Electronic energy + Delta-G solvation = -25438.018842 eV Core-core repulsion = 21121.221875 eV Total energy + Delta-G solvation = -4316.796966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.06422 -48.57521 -48.54637 -40.83426 -39.34754 -36.95883 -35.72214 -34.26680 -33.41721 -31.09110 -29.70025 -28.01197 -26.74232 -24.56832 -22.81594 -22.72346 -22.26620 -21.06688 -19.61484 -19.52070 -19.29978 -18.38071 -17.74480 -17.05260 -16.93821 -16.51287 -16.35794 -15.83326 -15.61472 -15.47228 -15.37499 -15.02749 -14.94582 -14.72978 -14.70072 -14.60360 -14.18331 -13.86569 -13.67380 -13.62971 -13.45557 -13.03959 -12.94915 -12.72806 -12.58633 -12.37183 -12.22181 -12.00301 -11.97512 -11.47147 -11.20105 -10.84332 -10.79489 -10.02618 -9.43105 -9.41287 -9.04029 -6.38086 0.92655 1.00305 1.48437 1.63579 1.77483 1.79424 1.81824 2.31835 2.33697 2.73337 2.88484 3.09939 3.12859 3.60576 3.92007 3.92239 4.03371 4.11426 4.31249 4.41743 4.43044 4.50688 4.52873 4.59810 4.71285 4.75159 4.98539 5.00044 5.09518 5.10010 5.34340 5.51534 5.53984 5.81653 5.85780 6.00509 6.06855 6.31157 6.46843 6.66356 6.88292 7.04150 7.42970 8.10233 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.002996 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.534521 B = 9342.765004 C =10733.511877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.005 3.995 3 Si 1.107 2.893 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.085 3.915 10 C -0.247 4.247 11 C -0.098 4.098 12 C -0.251 4.251 13 C -0.081 4.081 14 C -0.189 4.189 15 C -0.071 4.071 16 C 0.516 3.484 17 O -0.576 6.576 18 N -0.725 5.725 19 C 0.123 3.877 20 C -0.125 4.125 21 C -0.159 4.159 22 C 0.454 3.546 23 F -0.191 7.191 24 F -0.191 7.191 25 F -0.189 7.189 26 H 0.284 0.716 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.415 0.585 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.811 -7.188 -7.058 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.211 4.211 3 Si 0.925 3.075 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.082 3.918 10 C -0.266 4.266 11 C -0.116 4.116 12 C -0.270 4.270 13 C -0.099 4.099 14 C -0.191 4.191 15 C -0.110 4.110 16 C 0.304 3.696 17 O -0.454 6.454 18 N -0.379 5.379 19 C -0.001 4.001 20 C -0.162 4.162 21 C -0.197 4.197 22 C 0.400 3.600 23 F -0.172 7.172 24 F -0.173 7.173 25 F -0.171 7.171 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.252 0.748 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.646 -5.476 -6.182 19.483 hybrid contribution -0.009 -1.628 -0.276 1.652 sum 17.637 -7.104 -6.458 20.081 Atomic orbital electron populations 1.70555 1.08936 1.33211 1.31791 1.28223 0.95706 1.07192 0.90024 0.83133 0.74933 0.70515 0.78903 1.19580 1.20012 1.17550 1.20556 1.02750 0.94880 1.38790 0.91162 1.17793 0.90791 0.93377 0.89814 1.21154 1.05222 0.96929 1.03298 1.20897 0.98743 0.93212 0.98771 1.20719 1.04452 0.96328 1.05546 1.20822 0.95790 0.97122 0.96198 1.19527 1.03146 0.92851 1.03543 1.20286 0.88974 1.04529 0.97260 1.21073 0.86906 0.74472 0.87164 1.90670 1.88013 1.49829 1.16927 1.45861 1.05035 1.75592 1.11445 1.21221 0.81401 1.01934 0.95555 1.21676 0.91133 1.05378 0.98063 1.22801 0.91104 1.09406 0.96402 1.20777 0.83298 0.73151 0.82776 1.93185 1.96172 1.57460 1.70432 1.93184 1.45440 1.96197 1.82457 1.93181 1.95615 1.46342 1.81963 0.90403 0.89942 0.87368 0.86370 0.86188 0.86736 0.88627 0.74794 0.92631 0.91699 0.88706 0.89304 0.85728 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.02 12.32 21.82 0.27 -44.75 16 2 C 0.00 0.24 4.94 85.25 0.42 0.66 16 3 Si 1.11 44.23 30.00 68.60 2.06 46.29 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.54 -29.02 8.08 23.46 0.19 -28.83 16 8 H 0.07 3.66 6.73 -2.91 -0.02 3.64 16 9 C 0.08 4.59 5.30 -21.29 -0.11 4.47 16 10 C -0.25 -13.45 7.95 22.73 0.18 -13.26 16 11 C -0.10 -4.73 10.02 22.22 0.22 -4.51 16 12 C -0.25 -11.17 10.05 22.46 0.23 -10.94 16 13 C -0.08 -3.56 9.66 22.22 0.21 -3.34 16 14 C -0.19 -8.88 4.43 -19.40 -0.09 -8.97 16 15 C -0.07 -2.60 5.18 29.10 0.15 -2.45 16 16 C 0.52 18.77 7.46 87.66 0.65 19.42 16 17 O -0.58 -27.09 16.03 -3.04 -0.05 -27.14 16 18 N -0.73 -17.72 5.56 -463.07 -2.57 -20.29 16 19 C 0.12 2.48 5.67 86.38 0.49 2.97 16 20 C -0.12 -1.52 5.09 30.59 0.16 -1.36 16 21 C -0.16 -1.60 5.26 30.59 0.16 -1.44 16 22 C 0.45 6.27 3.16 71.98 0.23 6.49 16 23 F -0.19 -3.13 16.80 44.97 0.76 -2.37 16 24 F -0.19 -3.04 17.32 44.97 0.78 -2.26 16 25 F -0.19 -2.94 16.80 44.97 0.76 -2.19 16 26 H 0.28 16.16 6.68 -92.71 -0.62 15.54 16 27 H 0.08 4.73 6.49 -2.91 -0.02 4.71 16 28 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 29 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.11 3.24 8.05 -2.39 -0.02 3.22 16 32 H 0.10 3.51 7.06 -2.39 -0.02 3.49 16 33 H 0.42 7.15 8.47 -92.71 -0.79 6.36 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.09 0.98 7.80 -2.39 -0.02 0.96 16 37 H 0.09 1.05 7.80 -2.39 -0.02 1.03 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.71 344.22 5.55 -65.17 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.46 Total: 28.64 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.09 Total: -41.09 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -2.30 Total: -65.04 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 2.29 Total: -6.83 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.06 Total: 46.29 kcal Total: -70.71 5.55 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776975271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.887 kcal (2) G-P(sol) polarization free energy of solvation -70.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds