Wall clock time and date at job start Fri Apr 10 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48497 * 109.47245 * 240.00204 * 3 2 1 5 5 H 1.48504 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47389 * 119.99740 * 3 2 1 7 7 C 1.39952 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00031 * 163.71517 * 7 2 1 9 9 C 1.41400 * 119.99783 * 343.71743 * 7 2 1 10 10 C 1.40737 * 120.24702 * 334.18645 * 9 7 2 11 11 C 1.37593 * 119.74587 * 180.32025 * 10 9 7 12 12 C 1.38659 * 120.24737 * 359.66290 * 11 10 9 13 13 C 1.38611 * 120.50106 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.25076 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.12727 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47103 * 264.99649 * 15 14 13 17 17 O 1.21279 * 120.00081 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99632 * 180.02562 * 18 16 15 20 20 C 1.39178 * 119.99905 * 180.02562 * 19 18 16 21 21 C 1.39572 * 120.84803 * 359.71920 * 20 19 18 22 22 C 1.37807 * 119.12368 * 179.77486 * 21 20 19 23 23 N 1.32056 * 120.87926 * 0.51369 * 22 21 20 24 24 C 1.32155 * 121.86703 * 359.74006 * 23 22 21 25 25 F 1.35102 * 119.60791 * 180.02562 * 24 23 22 26 26 C 1.38241 * 120.78405 * 359.97438 * 24 23 22 27 27 H 0.97000 * 120.00500 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.12405 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.87853 * 179.68193 * 11 10 9 30 30 H 1.07997 * 119.75123 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87706 * 180.02562 * 13 12 11 32 32 H 1.08995 * 109.47132 * 25.00296 * 15 14 13 33 33 H 1.09006 * 109.46926 * 145.00349 * 15 14 13 34 34 H 0.96998 * 120.00631 * 0.02562 * 18 16 15 35 35 H 0.96999 * 120.00324 * 0.02562 * 19 18 16 36 36 H 1.08000 * 120.43679 * 0.03084 * 21 20 19 37 37 H 1.08000 * 119.55727 * 180.25872 * 22 21 20 38 38 H 1.08006 * 120.48129 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0959 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2307 -0.2628 9 6 1.3434 -2.4121 0.3423 10 6 0.2100 -2.3817 1.1760 11 6 -0.4248 -3.5563 1.5084 12 6 0.0441 -4.7662 1.0195 13 6 1.1556 -4.8075 0.1924 14 6 1.8070 -3.6450 -0.1524 15 6 3.0155 -3.6932 -1.0513 16 6 4.2661 -3.7192 -0.2108 17 8 4.1841 -3.7009 0.9991 18 7 5.4757 -3.7638 -0.8037 19 7 6.6382 -3.7886 -0.0222 20 6 7.8873 -3.8341 -0.6344 21 6 8.0022 -3.8616 -2.0251 22 6 9.2568 -3.9018 -2.5938 23 7 10.3417 -3.9246 -1.8412 24 6 10.2758 -3.9049 -0.5215 25 9 11.4152 -3.9292 0.2041 26 6 9.0550 -3.8588 0.1254 27 1 -0.4851 0.8400 0.0004 28 1 -0.1573 -1.4404 1.5573 29 1 -1.2916 -3.5359 2.1522 30 1 -0.4605 -5.6833 1.2852 31 1 1.5120 -5.7554 -0.1830 32 1 2.9737 -4.5906 -1.6685 33 1 3.0269 -2.8116 -1.6923 34 1 5.5413 -3.7788 -1.7713 35 1 6.5726 -3.7739 0.9454 36 1 7.1196 -3.8474 -2.6474 37 1 9.3539 -3.9190 -3.6693 38 1 9.0068 -3.8434 1.2043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781363548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:37 Heat of formation + Delta-G solvation = 13.940775 kcal Electronic energy + Delta-G solvation = -24604.480587 eV Core-core repulsion = 20748.476215 eV Total energy + Delta-G solvation = -3856.004373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.15151 -40.48459 -39.42657 -37.59514 -36.24970 -33.71998 -32.99922 -31.84215 -31.01664 -29.61342 -29.33031 -26.72978 -25.08463 -24.13190 -22.93600 -21.27666 -21.01587 -19.79451 -18.77360 -17.97073 -17.26776 -16.84199 -16.49997 -16.19973 -16.04329 -15.56407 -15.27328 -15.06415 -14.60601 -14.18700 -13.91065 -13.86023 -13.59949 -13.48201 -13.34125 -12.66673 -12.28317 -12.26839 -11.87846 -11.65985 -11.32573 -11.18442 -11.08039 -10.80183 -10.49418 -9.98897 -9.90515 -9.67743 -9.59099 -9.48216 -9.28975 -9.24375 -7.73823 -7.42699 -7.40469 -6.82899 -4.45220 0.75311 1.11305 1.74839 2.73862 2.92686 2.96588 3.00727 3.03382 3.20303 3.46296 3.47016 3.85870 4.02503 4.37498 4.56303 4.61108 4.77000 5.05651 5.20532 5.45901 5.50568 5.61397 5.64183 5.80807 5.87973 6.17557 6.25721 6.32017 6.41690 6.61425 6.72648 6.98682 7.19451 7.23740 7.32000 7.51718 7.56282 7.58648 7.81816 7.95409 8.03873 8.20631 8.50267 8.55561 8.80758 8.90863 10.10989 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.003262 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.579939 B = 8582.526434 C = 9783.399028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.073 0.927 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.104 4.104 12 C -0.240 4.240 13 C -0.077 4.077 14 C -0.189 4.189 15 C -0.057 4.057 16 C 0.515 3.485 17 O -0.514 6.514 18 N -0.541 5.541 19 N -0.519 5.519 20 C 0.286 3.714 21 C -0.268 4.268 22 C 0.181 3.819 23 N -0.561 5.561 24 C 0.353 3.647 25 F -0.113 7.113 26 C -0.276 4.276 27 H 0.282 0.718 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.420 0.580 35 H 0.438 0.562 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -4.882 -5.450 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.178 4.178 11 C -0.123 4.123 12 C -0.259 4.259 13 C -0.096 4.096 14 C -0.191 4.191 15 C -0.098 4.098 16 C 0.303 3.697 17 O -0.385 6.385 18 N -0.292 5.292 19 N -0.239 5.239 20 C 0.169 3.831 21 C -0.295 4.295 22 C 0.026 3.974 23 N -0.280 5.280 24 C 0.200 3.800 25 F -0.092 7.092 26 C -0.304 4.304 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.261 0.739 35 H 0.282 0.718 36 H 0.155 0.845 37 H 0.184 0.816 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.053 -4.720 -4.989 13.872 hybrid contribution -0.228 0.848 0.537 1.029 sum 11.825 -3.872 -4.452 13.216 Atomic orbital electron populations 1.69795 1.07486 1.29369 1.35037 1.25872 0.94705 1.01164 0.92240 0.86442 0.80243 0.80537 0.79986 1.19034 1.20205 1.18910 1.19434 0.97096 0.91029 1.41219 0.90889 1.17328 0.90771 0.91193 0.87843 1.21315 0.98913 0.96744 1.00806 1.20706 0.98606 0.93437 0.99540 1.20321 1.01587 0.96245 1.07749 1.20310 0.95878 0.95483 0.97901 1.18944 0.99315 0.94186 1.06699 1.20213 0.88696 1.03533 0.97334 1.21912 0.82439 0.75064 0.90250 1.90722 1.85904 1.47324 1.14507 1.45565 0.97000 1.79435 1.07185 1.43395 0.95087 1.78573 1.06852 1.17655 0.83715 0.89625 0.92138 1.21469 1.00236 1.14889 0.92882 1.22164 0.85648 0.90136 0.99468 1.67095 1.34725 1.21554 1.04658 1.17642 0.80878 0.94795 0.86675 1.91616 1.49176 1.93023 1.75419 1.20918 0.89998 1.17704 1.01823 0.90742 0.86445 0.89461 0.89537 0.89630 0.89819 0.87869 0.73897 0.71797 0.84470 0.81571 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.66 10.95 55.55 0.61 -19.05 16 2 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 3 Si 0.90 18.22 29.59 -169.99 -5.03 13.19 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.43 8.14 -37.74 -0.31 -11.74 16 8 H 0.07 1.75 6.67 -52.49 -0.35 1.40 16 9 C 0.13 3.32 5.56 -106.82 -0.59 2.72 16 10 C -0.16 -4.06 8.69 -38.87 -0.34 -4.40 16 11 C -0.10 -2.44 10.02 -39.66 -0.40 -2.84 16 12 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 13 C -0.08 -1.67 9.66 -39.66 -0.38 -2.06 16 14 C -0.19 -4.22 4.43 -103.91 -0.46 -4.68 16 15 C -0.06 -0.97 5.18 -29.03 -0.15 -1.12 16 16 C 0.52 8.82 7.56 -10.98 -0.08 8.74 16 17 O -0.51 -11.07 15.87 5.56 0.09 -10.99 16 18 N -0.54 -6.86 6.23 31.22 0.19 -6.67 16 19 N -0.52 -6.33 6.44 32.52 0.21 -6.12 16 20 C 0.29 3.09 6.77 -83.62 -0.57 2.52 16 21 C -0.27 -2.45 9.54 -39.24 -0.37 -2.83 16 22 C 0.18 1.66 11.17 -17.61 -0.20 1.46 16 23 N -0.56 -6.70 10.37 -13.69 -0.14 -6.84 16 24 C 0.35 4.20 8.40 -17.41 -0.15 4.05 16 25 F -0.11 -1.38 17.29 2.25 0.04 -1.34 16 26 C -0.28 -2.96 9.97 -39.17 -0.39 -3.35 16 27 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 28 H 0.12 3.11 6.20 -52.49 -0.33 2.78 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.10 1.71 7.08 -51.93 -0.37 1.34 16 34 H 0.42 3.89 6.69 -182.60 -1.22 2.67 16 35 H 0.44 5.58 8.03 -182.60 -1.47 4.11 16 36 H 0.14 0.93 6.33 -52.49 -0.33 0.60 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -30.52 335.99 -9.57 -40.09 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.73 Total: 10.09 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -4.87 Total: -17.43 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.87 Total: -38.68 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.52 -9.57 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781363548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.031 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds