Wall clock time and date at job start Fri Apr 10 2020 23:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48497 * 109.47245 * 240.00204 * 3 2 1 5 5 H 1.48504 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47389 * 119.99740 * 3 2 1 7 7 C 1.39952 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00031 * 163.71517 * 7 2 1 9 9 C 1.41400 * 119.99783 * 343.71743 * 7 2 1 10 10 C 1.40737 * 120.24702 * 334.18645 * 9 7 2 11 11 C 1.37593 * 119.74587 * 180.32025 * 10 9 7 12 12 C 1.38659 * 120.24737 * 359.66290 * 11 10 9 13 13 C 1.38611 * 120.50106 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.25076 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.12727 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47103 * 264.99649 * 15 14 13 17 17 O 1.21279 * 120.00081 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99632 * 180.02562 * 18 16 15 20 20 C 1.39178 * 119.99905 * 180.02562 * 19 18 16 21 21 C 1.39572 * 120.84803 * 359.71920 * 20 19 18 22 22 C 1.37807 * 119.12368 * 179.77486 * 21 20 19 23 23 N 1.32056 * 120.87926 * 0.51369 * 22 21 20 24 24 C 1.32155 * 121.86703 * 359.74006 * 23 22 21 25 25 F 1.35102 * 119.60791 * 180.02562 * 24 23 22 26 26 C 1.38241 * 120.78405 * 359.97438 * 24 23 22 27 27 H 0.97000 * 120.00500 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.12405 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.87853 * 179.68193 * 11 10 9 30 30 H 1.07997 * 119.75123 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87706 * 180.02562 * 13 12 11 32 32 H 1.08995 * 109.47132 * 25.00296 * 15 14 13 33 33 H 1.09006 * 109.46926 * 145.00349 * 15 14 13 34 34 H 0.96998 * 120.00631 * 0.02562 * 18 16 15 35 35 H 0.96999 * 120.00324 * 0.02562 * 19 18 16 36 36 H 1.08000 * 120.43679 * 0.03084 * 21 20 19 37 37 H 1.08000 * 119.55727 * 180.25872 * 22 21 20 38 38 H 1.08006 * 120.48129 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0959 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2307 -0.2628 9 6 1.3434 -2.4121 0.3423 10 6 0.2100 -2.3817 1.1760 11 6 -0.4248 -3.5563 1.5084 12 6 0.0441 -4.7662 1.0195 13 6 1.1556 -4.8075 0.1924 14 6 1.8070 -3.6450 -0.1524 15 6 3.0155 -3.6932 -1.0513 16 6 4.2661 -3.7192 -0.2108 17 8 4.1841 -3.7009 0.9991 18 7 5.4757 -3.7638 -0.8037 19 7 6.6382 -3.7886 -0.0222 20 6 7.8873 -3.8341 -0.6344 21 6 8.0022 -3.8616 -2.0251 22 6 9.2568 -3.9018 -2.5938 23 7 10.3417 -3.9246 -1.8412 24 6 10.2758 -3.9049 -0.5215 25 9 11.4152 -3.9292 0.2041 26 6 9.0550 -3.8588 0.1254 27 1 -0.4851 0.8400 0.0004 28 1 -0.1573 -1.4404 1.5573 29 1 -1.2916 -3.5359 2.1522 30 1 -0.4605 -5.6833 1.2852 31 1 1.5120 -5.7554 -0.1830 32 1 2.9737 -4.5906 -1.6685 33 1 3.0269 -2.8116 -1.6923 34 1 5.5413 -3.7788 -1.7713 35 1 6.5726 -3.7739 0.9454 36 1 7.1196 -3.8474 -2.6474 37 1 9.3539 -3.9190 -3.6693 38 1 9.0068 -3.8434 1.2043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781363548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:36 Heat of formation + Delta-G solvation = -4.679711 kcal Electronic energy + Delta-G solvation = -24605.288032 eV Core-core repulsion = 20748.476215 eV Total energy + Delta-G solvation = -3856.811818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.04497 -41.43725 -40.63594 -39.20401 -37.37651 -35.50001 -34.12919 -33.29985 -31.80870 -31.35211 -30.45983 -28.22759 -26.81495 -24.94752 -23.87061 -22.83173 -22.52082 -21.27326 -19.81347 -19.04216 -18.98539 -17.92092 -17.46847 -17.22553 -17.08708 -16.86213 -16.44668 -16.30337 -16.18375 -15.47565 -15.27989 -14.94169 -14.88011 -14.52771 -14.50557 -14.36049 -13.55853 -13.37906 -13.30976 -13.02231 -12.92290 -12.76726 -12.66324 -12.49605 -12.13075 -11.32218 -11.22617 -11.07747 -11.02955 -11.00883 -10.72581 -10.07883 -9.22250 -9.17904 -8.71005 -8.59868 -6.29870 -0.03933 0.27716 0.67175 1.05057 1.21652 1.36574 1.45480 1.54110 1.67500 2.18670 2.65349 2.66998 2.78203 3.04960 3.63080 3.68952 3.84986 3.99701 4.04417 4.32178 4.40833 4.43706 4.61900 4.69882 4.72184 4.76806 4.81723 4.89151 5.06006 5.19954 5.37243 5.42760 5.55237 5.70124 5.78897 6.03777 6.16432 6.20230 6.24210 6.41369 6.54650 6.74282 6.77557 6.98528 7.11714 7.33045 8.36169 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.003262 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.579939 B = 8582.526434 C = 9783.399028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.039 3.961 3 Si 0.967 3.033 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.482 4.482 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.195 4.195 11 C -0.117 4.117 12 C -0.245 4.245 13 C -0.087 4.087 14 C -0.189 4.189 15 C -0.057 4.057 16 C 0.520 3.480 17 O -0.567 6.567 18 N -0.519 5.519 19 N -0.526 5.526 20 C 0.275 3.725 21 C -0.260 4.260 22 C 0.181 3.819 23 N -0.581 5.581 24 C 0.334 3.666 25 F -0.121 7.121 26 C -0.273 4.273 27 H 0.286 0.714 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.438 0.562 35 H 0.434 0.566 36 H 0.165 0.835 37 H 0.203 0.797 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -5.761 -7.526 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.176 1.176 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.512 4.512 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.215 4.215 11 C -0.135 4.135 12 C -0.264 4.264 13 C -0.105 4.105 14 C -0.191 4.191 15 C -0.097 4.097 16 C 0.308 3.692 17 O -0.442 6.442 18 N -0.269 5.269 19 N -0.248 5.248 20 C 0.160 3.840 21 C -0.285 4.285 22 C 0.026 3.974 23 N -0.301 5.301 24 C 0.181 3.819 25 F -0.100 7.100 26 C -0.302 4.302 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.283 0.717 35 H 0.277 0.723 36 H 0.183 0.817 37 H 0.220 0.780 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.342 -5.614 -7.136 16.139 hybrid contribution -0.556 0.981 1.131 1.597 sum 12.786 -4.633 -6.005 14.867 Atomic orbital electron populations 1.69866 1.08806 1.30276 1.36160 1.26611 0.95331 1.04039 0.91608 0.85473 0.78987 0.76800 0.79842 1.17554 1.19402 1.19898 1.19618 0.97255 0.91798 1.42516 0.90645 1.17724 0.91230 0.92897 0.88548 1.21320 1.00681 0.96728 1.02771 1.20956 0.99132 0.93505 0.99922 1.20731 1.01807 0.96638 1.07192 1.20777 0.95467 0.96836 0.97433 1.19451 1.00494 0.93273 1.05930 1.20235 0.86873 1.05944 0.96689 1.21639 0.83562 0.74701 0.89309 1.90712 1.86766 1.50175 1.16578 1.45072 0.96456 1.77436 1.07960 1.43394 0.95004 1.79747 1.06674 1.17805 0.82989 0.90252 0.92977 1.21824 1.01396 1.13018 0.92298 1.22789 0.84892 0.88835 1.00881 1.67129 1.36271 1.21896 1.04805 1.17811 0.81007 0.96054 0.86992 1.91592 1.49559 1.93221 1.75646 1.21021 0.89727 1.16884 1.02527 0.90374 0.88706 0.87973 0.86829 0.86084 0.85480 0.87298 0.71690 0.72301 0.81713 0.78025 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.32 10.95 21.83 0.24 -42.08 16 2 C 0.04 1.91 5.16 85.26 0.44 2.35 16 3 Si 0.97 37.63 29.59 68.60 2.03 39.66 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.48 -24.47 8.14 23.46 0.19 -24.28 16 8 H 0.08 3.64 6.67 -2.91 -0.02 3.62 16 9 C 0.10 5.07 5.56 -21.29 -0.12 4.95 16 10 C -0.20 -10.41 8.69 22.73 0.20 -10.21 16 11 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 12 C -0.24 -10.54 10.05 22.46 0.23 -10.31 16 13 C -0.09 -3.59 9.66 22.22 0.21 -3.38 16 14 C -0.19 -8.27 4.43 -19.40 -0.09 -8.35 16 15 C -0.06 -1.80 5.18 29.10 0.15 -1.65 16 16 C 0.52 16.83 7.56 87.66 0.66 17.49 16 17 O -0.57 -24.25 15.87 -3.03 -0.05 -24.29 16 18 N -0.52 -11.73 6.23 -173.53 -1.08 -12.81 16 19 N -0.53 -11.83 6.44 -51.01 -0.33 -12.16 16 20 C 0.27 5.32 6.77 38.56 0.26 5.58 16 21 C -0.26 -3.84 9.54 22.49 0.21 -3.62 16 22 C 0.18 2.72 11.17 84.56 0.94 3.67 16 23 N -0.58 -12.78 10.37 -197.24 -2.05 -14.83 16 24 C 0.33 7.59 8.40 84.65 0.71 8.30 16 25 F -0.12 -2.90 17.29 44.97 0.78 -2.12 16 26 C -0.27 -5.52 9.97 22.53 0.22 -5.29 16 27 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 28 H 0.09 5.34 6.20 -2.91 -0.02 5.32 16 29 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.13 2.89 8.05 -2.39 -0.02 2.87 16 33 H 0.11 3.37 7.08 -2.38 -0.02 3.35 16 34 H 0.44 6.37 6.69 -213.32 -1.43 4.94 16 35 H 0.43 10.70 8.03 -213.32 -1.71 8.99 16 36 H 0.17 1.44 6.33 -2.91 -0.02 1.42 16 37 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -68.90 335.99 2.00 -66.90 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -2.00 Total: 31.80 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.46 Total: -30.08 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.22 Total: -81.87 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -68.90 2.00 -66.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781363548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.222 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds