Wall clock time and date at job start Fri Apr 10 2020 23:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39708 * 120.20053 * 62.51523 * 3 2 1 5 5 C 1.37818 * 119.91386 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.33043 * 359.97438 * 5 4 3 7 7 C 1.38051 * 120.41137 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.07826 * 359.97438 * 7 6 5 9 9 N 1.39332 * 120.16496 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00381 * 313.23199 * 9 8 7 11 11 S 1.71202 * 119.99854 * 4.75608 * 10 9 8 12 12 N 1.34775 * 120.00612 * 184.75559 * 10 9 8 13 13 C 1.46925 * 120.62617 * 4.89366 * 12 10 9 14 14 C 1.52760 * 109.00914 * 233.58463 * 13 12 10 15 15 C 1.53040 * 109.38455 * 305.59155 * 14 13 12 16 16 C 1.50704 * 109.44928 * 181.25356 * 15 14 13 17 17 H 1.07998 * 119.99834 * 239.93421 * 16 15 14 18 18 C 1.37872 * 120.00182 * 59.93658 * 16 15 14 19 19 N 1.31522 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00400 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47183 * 89.99626 * 20 18 16 22 22 H 1.48491 * 109.47756 * 210.00268 * 20 18 16 23 23 H 1.48500 * 109.47010 * 330.00237 * 20 18 16 24 24 C 1.53036 * 109.53979 * 61.23739 * 15 14 13 25 25 C 1.46929 * 120.63442 * 185.17918 * 12 10 9 26 26 H 1.07999 * 120.04187 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83148 * 180.27614 * 5 4 3 28 28 H 1.07999 * 119.79085 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.95958 * 180.02562 * 7 6 5 30 30 H 0.97007 * 119.99993 * 133.23997 * 9 8 7 31 31 H 1.09001 * 109.58702 * 353.42022 * 13 12 10 32 32 H 1.08997 * 109.58965 * 113.84652 * 13 12 10 33 33 H 1.09005 * 109.56632 * 185.55163 * 14 13 12 34 34 H 1.09007 * 109.38720 * 65.52010 * 14 13 12 35 35 H 1.09004 * 109.45762 * 301.21501 * 15 14 13 36 36 H 0.96994 * 119.99840 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.49738 * 178.68278 * 24 15 14 38 38 H 1.08998 * 109.52149 * 58.60133 * 24 15 14 39 39 H 1.09002 * 109.58250 * 246.15310 * 25 12 10 40 40 H 1.09001 * 109.58650 * 6.43165 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.5563 -1.0712 5 6 4.6492 -0.5520 -1.0653 6 6 5.3426 0.0027 -0.0018 7 6 4.6616 0.5567 1.0636 8 6 3.2736 0.5616 1.0753 9 7 2.5844 1.1198 2.1500 10 6 2.9465 0.8182 3.4126 11 16 4.3274 -0.1526 3.6983 12 7 2.2217 1.2808 4.4504 13 6 0.9755 2.0243 4.2206 14 6 1.0470 3.3570 4.9638 15 6 1.3629 3.0996 6.4390 16 6 1.4033 4.4114 7.1798 17 1 2.3072 4.7187 7.6848 18 6 0.2865 5.2192 7.2129 19 7 -0.8144 4.8447 6.5984 20 14 0.3364 6.8448 8.1317 21 1 0.7818 7.9207 7.2103 22 1 -1.0191 7.1640 8.6470 23 1 1.2864 6.7419 9.2684 24 6 2.7212 2.4048 6.5579 25 6 2.6658 1.0565 5.8329 26 1 2.7352 -0.9896 -1.9027 27 1 5.1913 -0.9789 -1.8961 28 1 6.4226 0.0010 -0.0060 29 1 5.2095 0.9876 1.8886 30 1 1.8439 1.7254 1.9894 31 1 0.8515 2.2088 3.1535 32 1 0.1306 1.4458 4.5940 33 1 0.0903 3.8729 4.8812 34 1 1.8318 3.9739 4.5259 35 1 0.5902 2.4629 6.8700 36 1 -1.5999 5.4132 6.6214 37 1 2.9561 2.2429 7.6098 38 1 3.4909 3.0299 6.1052 39 1 1.9615 0.3973 6.3405 40 1 3.6557 0.6002 5.8292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781542799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:39 Heat of formation + Delta-G solvation = 79.584768 kcal Electronic energy + Delta-G solvation = -23266.573945 eV Core-core repulsion = 19979.629285 eV Total energy + Delta-G solvation = -3286.944659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65724 -39.21221 -36.67968 -36.53729 -34.09070 -31.78935 -31.53630 -30.83185 -29.74080 -26.84954 -24.53663 -24.12292 -23.21030 -22.45084 -21.33458 -19.80649 -19.10210 -18.16514 -17.77276 -16.48263 -16.08047 -15.78657 -15.25296 -14.71155 -14.54644 -14.42323 -14.20848 -14.14473 -13.44630 -13.35304 -13.16954 -13.09182 -12.83527 -12.78895 -12.16297 -12.07042 -11.81582 -11.61646 -11.47270 -11.09541 -11.05393 -10.82707 -10.64318 -10.31859 -9.95288 -9.69366 -9.37580 -9.20287 -9.12346 -8.56444 -8.43685 -7.60876 -7.01692 -6.20246 -4.26941 0.45306 1.02237 1.59457 1.96126 2.42186 2.60554 2.79224 3.17190 3.18686 3.26752 3.29706 3.59645 3.70138 4.28060 4.61529 4.78399 4.91536 5.00200 5.11256 5.12633 5.24661 5.41750 5.52268 5.64018 5.67743 5.80906 5.89393 5.95967 5.99727 6.10800 6.24766 6.30242 6.36182 6.44771 6.64083 6.72052 6.78002 6.94662 6.96270 7.24090 7.26464 7.45737 7.65495 7.82013 8.19061 8.76700 9.39784 10.85643 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.003418 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.990209 B = 8190.751125 C = 8880.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.249 3.751 3 C -0.042 4.042 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.085 4.085 7 C -0.069 4.069 8 C 0.186 3.814 9 N -0.648 5.648 10 C 0.561 3.439 11 S -0.651 6.651 12 N -0.534 5.534 13 C 0.088 3.912 14 C -0.124 4.124 15 C 0.047 3.953 16 C -0.514 4.514 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.123 4.123 25 C 0.098 3.902 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.408 0.592 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -7.826 -13.985 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.066 4.066 3 C -0.049 4.049 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.092 4.092 8 C 0.088 3.912 9 N -0.278 5.278 10 C 0.202 3.798 11 S -0.517 6.517 12 N -0.236 5.236 13 C -0.036 4.036 14 C -0.163 4.163 15 C 0.028 3.972 16 C -0.552 4.552 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.161 4.161 25 C -0.024 4.024 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.250 0.750 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.396 -8.347 -13.610 17.596 hybrid contribution -0.970 1.695 0.230 1.967 sum 6.426 -6.652 -13.380 16.266 Atomic orbital electron populations 1.81290 1.11848 1.08182 1.07406 1.25696 0.92687 0.94178 0.94033 1.15946 0.84140 1.06139 0.98667 1.20897 0.94367 0.97632 0.96362 1.21102 0.93397 1.00212 0.99130 1.21246 1.00647 0.96394 0.92260 1.21581 0.91744 0.98017 0.97842 1.17291 0.91461 0.96678 0.85723 1.42224 1.35815 1.47089 1.02704 1.22287 0.90570 0.85347 0.81630 1.93155 1.20044 1.48081 1.90465 1.47744 1.21466 1.48066 1.06362 1.22374 0.84662 0.96788 0.99790 1.22046 1.04887 0.91617 0.97704 1.18682 0.91081 0.95848 0.91561 1.21151 0.98117 1.03569 1.32315 0.92384 1.24976 0.95351 0.98250 0.95386 1.69802 1.02322 1.37797 1.43225 0.86561 0.77406 0.83717 0.80185 1.20667 1.21170 1.19790 1.22048 1.01156 0.93549 0.99329 1.22558 1.03250 0.99938 0.76661 0.84828 0.84922 0.84777 0.82412 0.74993 0.92275 0.89815 0.86919 0.93768 0.95131 0.92777 0.90951 0.92455 0.90586 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.98 18.54 41.84 0.78 -5.20 16 2 C 0.25 3.10 14.62 -22.47 -0.33 2.77 16 3 C -0.04 -0.45 5.75 -106.64 -0.61 -1.07 16 4 C -0.07 -0.56 9.75 -39.19 -0.38 -0.95 16 5 C -0.12 -0.82 10.02 -39.62 -0.40 -1.22 16 6 C -0.08 -0.70 10.03 -39.54 -0.40 -1.09 16 7 C -0.07 -0.77 7.86 -39.44 -0.31 -1.08 16 8 C 0.19 2.22 5.90 -83.46 -0.49 1.72 16 9 N -0.65 -8.59 4.71 -11.21 -0.05 -8.64 16 10 C 0.56 8.78 7.58 -86.93 -0.66 8.12 16 11 S -0.65 -11.32 24.18 -107.50 -2.60 -13.92 16 12 N -0.53 -8.57 2.98 -175.06 -0.52 -9.10 16 13 C 0.09 1.42 6.40 -3.93 -0.03 1.40 16 14 C -0.12 -2.48 5.14 -26.83 -0.14 -2.62 16 15 C 0.05 1.02 2.07 -91.73 -0.19 0.83 16 16 C -0.51 -12.86 8.56 -34.44 -0.29 -13.16 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 19 N -0.89 -23.40 11.31 55.43 0.63 -22.77 16 20 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.12 -2.26 5.30 -26.62 -0.14 -2.40 16 25 C 0.10 1.60 6.31 -3.71 -0.02 1.58 16 26 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 27 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.16 2.02 6.22 -47.45 -0.30 1.72 16 30 H 0.41 5.03 6.02 -40.82 -0.25 4.79 16 31 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.11 2.57 6.03 -51.93 -0.31 2.26 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.12 1.95 6.00 -50.51 -0.30 1.65 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -28.59 342.08 -10.92 -39.51 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.79 Total: 5.57 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -4.49 Total: -5.67 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.83 Total: -45.71 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -2.60 Total: -13.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.59 -10.92 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781542799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.094 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds